Genomic map of Staphylococcus phage StB20 (NC_019915)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019915
Definition
Staphylococcus phage StB20, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40917
Host Name
Staphylococcus capitis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
65
%GC
34.06
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007236657.1 NC_019915_p36 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 17427 17621
YP_007236673.1 NC_019915_p52 endopeptidase phrog_326 tail protein with endopeptidase domain other 1 29506 31074
YP_007236651.1 NC_019915_p30 hypothetical protein phrog_386 unknown function unknown function 1 13463 13612
YP_007236664.1 NC_019915_p43 hypothetical protein phrog_78 tail terminator connector 1 21903 22292
YP_007236670.1 NC_019915_p49 tail tape measure protein phrog_58 tail length tape measure protein tail 1 25549 27282
YP_007236634.1 NC_019915_p13 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6596 7057
YP_007236630.1 NC_019915_p9 hypothetical protein phrog_7824 unknown function unknown function 1 4971 5246
YP_007236686.1 NC_019915_p65 lysin phrog_833 endolysin lysis 1 39802 40614
YP_007236656.1 NC_019915_p35 TerL phrog_9 terminase large subunit head and packaging 1 15656 17413
YP_007236641.1 NC_019915_p20 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 10562 10969
YP_007236676.1 NC_019915_p55 tail protein phrog_257 minor tail protein tail 1 33118 34332
YP_007236649.1 NC_019915_p28 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 12806 13231
YP_007236624.1 NC_019915_p3 transcription repressor phrog_31815 transcriptional regulator transcription regulation -1 2445 2585
YP_007236636.1 NC_019915_p15 replication initiation protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 7725 8525
YP_007236674.1 NC_019915_p53 hypothetical protein phrog_10463 unknown function unknown function 1 31067 31240
YP_007236683.1 NC_019915_p62 holin phrog_962 holin lysis 1 37833 38243
YP_007236648.1 NC_019915_p27 hypothetical protein phrog_6072 unknown function unknown function 1 12625 12804
YP_007236681.1 NC_019915_p60 hypothetical protein phrog_1766 tail fiber protein tail 1 37271 37630
YP_007236654.1 NC_019915_p33 hypothetical protein singleton unknown function unknown function 1 15083 15220
YP_007236622.1 NC_019915_p1 integrase phrog_95 integrase integration and excision -1 97 1401
YP_007236628.1 NC_019915_p7 hypothetical protein phrog_3785 unknown function unknown function 1 4639 4743
YP_007236677.1 NC_019915_p56 hypothetical protein phrog_4175 poly-gamma-glutamate hydrolase other 1 34334 34960
YP_007236682.1 NC_019915_p61 hypothetical protein phrog_134 unknown function unknown function 1 37623 37769
YP_007236645.1 NC_019915_p24 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 11723 12202
YP_007236685.1 NC_019915_p64 homing HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38909 39454
YP_007236658.1 NC_019915_p37 portal HK97 family phrog_12 portal protein head and packaging 1 17624 18856
YP_007236671.1 NC_019915_p50 tail tape measure protein phrog_8537 unknown function unknown function 1 27234 28670
YP_007236663.1 NC_019915_p42 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 21617 21883
YP_007236662.1 NC_019915_p41 phage head-tail joining protein phrog_25 head closure Hc1 connector 1 21153 21482
YP_007236666.1 NC_019915_p45 hypothetical protein phrog_3673 Arc-like repressor transcription regulation 1 22953 23138
YP_007236650.1 NC_019915_p29 RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 13280 13462
YP_007236643.1 NC_019915_p22 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 11157 11522
YP_007236680.1 NC_019915_p59 tail protein phrog_257 minor tail protein tail 1 35877 37259
YP_007236684.1 NC_019915_p63 lysin phrog_635 endolysin lysis 1 38218 38847
YP_007236644.1 NC_019915_p23 hypothetical protein phrog_13370 unknown function unknown function 1 11523 11720
YP_007236646.1 NC_019915_p25 hypothetical protein phrog_3683 unknown function unknown function 1 12199 12384
YP_007236642.1 NC_019915_p21 hypothetical protein phrog_6999 unknown function unknown function 1 10962 11156
YP_007236625.1 NC_019915_p4 transcription repressor phrog_3 transcriptional repressor transcription regulation 1 3450 3719
YP_007236640.1 NC_019915_p19 hypothetical protein phrog_433 unknown function unknown function 1 10308 10553
YP_007236629.1 NC_019915_p8 hypothetical protein phrog_5815 unknown function unknown function 1 4740 4916
YP_007236637.1 NC_019915_p16 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 8525 8884
YP_007236667.1 NC_019915_p46 hypothetical protein phrog_187 head-tail adaptor connector 1 23202 23564
YP_007236678.1 NC_019915_p57 hypothetical protein phrog_2968 tail protein tail 1 34957 35382
YP_007236659.1 NC_019915_p38 prohead protease phrog_80 head maturation protease head and packaging 1 18846 19403
YP_007236679.1 NC_019915_p58 hypothetical protein phrog_2990 unknown function unknown function 1 35369 35776
YP_007236623.1 NC_019915_p2 hypothetical protein phrog_5610 unknown function unknown function -1 1470 2393
YP_007236669.1 NC_019915_p48 tail tape measure protein phrog_28 tail length tape measure protein tail 1 23778 25574
YP_007236661.1 NC_019915_p40 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 20822 21163
YP_007236652.1 NC_019915_p31 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 13629 14075
YP_007236638.1 NC_019915_p17 helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8877 10112
YP_007236635.1 NC_019915_p14 hypothetical protein phrog_398 unknown function unknown function 1 7058 7732
YP_007236631.1 NC_019915_p10 hypothetical protein phrog_946 unknown function unknown function 1 5218 5445
YP_007236653.1 NC_019915_p32 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14677 15054
YP_007236626.1 NC_019915_p5 transcription antirepressor phrog_463 anti-repressor transcription regulation 1 3733 4452
YP_007236627.1 NC_019915_p6 hypothetical protein phrog_25254 unknown function unknown function 1 4478 4642
YP_007236655.1 NC_019915_p34 TerS phrog_83 terminase small subunit head and packaging 1 15199 15669
YP_007236647.1 NC_019915_p26 hypothetical protein phrog_4380 unknown function unknown function 1 12381 12641
YP_007236665.1 NC_019915_p44 major tail protein phrog_88 major tail protein tail 1 22305 22934
YP_007236639.1 NC_019915_p18 hypothetical protein phrog_3161 unknown function unknown function 1 10109 10330
YP_007236660.1 NC_019915_p39 major head protein phrog_10 major head protein head and packaging 1 19445 20803
YP_007236668.1 NC_019915_p47 hypothetical protein phrog_1963 unknown function unknown function 1 23597 23749
YP_007236632.1 NC_019915_p11 ERF-like recombinase phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5438 6082
YP_007236675.1 NC_019915_p54 Zn carboxypeptidase phrog_4722 zinc carboxypeptidase other 1 31256 33118
YP_007236672.1 NC_019915_p51 tail protein phrog_33 distal tail protein Dit tail 1 28672 29505
YP_007236633.1 NC_019915_p12 single-strand DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 6082 6492