Genomic map of Yersinia phage phiR201 (NC_019919)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019919
Definition
Yersinia phage phiR201 complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Haartmanvirus; Yersinia virus phiR201.
DB of origin
REFSEQ
Length
122696
Host Name
Yersinia enterocolitica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
166
%GC
40.51
Number of singletons
11
Number of paralogs
18

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007236985.2 NC_019919_p8 hypothetical protein phrog_4718 unknown function unknown function -1 4731 4940
YP_007237005.1 NC_019919_p31 serine/threonine protein phosphatase phrog_547 phosphoesterase other -1 17097 17690
YP_007237034.1 NC_019919_p60 hypothetical protein phrog_6221 unknown function unknown function -1 32993 33157
YP_007237094.1 NC_019919_p120 DNA helicase, phage-associated phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 75662 77014
YP_007237013.1 NC_019919_p39 holin phrog_860 holin lysis -1 20961 21617
YP_009237931.1 NC_019919_p166 hypothetical protein phrog_12351 unknown function unknown function 1 121335 121574
YP_009237926.1 NC_019919_p161 hypothetical protein phrog_4263 unknown function unknown function 1 119119 120135
YP_007236999.1 NC_019919_p25 hypothetical protein phrog_4731 unknown function unknown function -1 14913 15245
YP_007236995.1 NC_019919_p21 hypothetical protein phrog_4605 unknown function unknown function -1 12821 13339
YP_007237105.1 NC_019919_p131 hypothetical protein phrog_1084 unknown function unknown function -1 88322 88744
YP_007236986.1 NC_019919_p9 hypothetical protein phrog_4263 unknown function unknown function 1 6324 7340
YP_007237052.1 NC_019919_p78 hypothetical protein phrog_1479 unknown function unknown function -1 43327 43644
YP_007237122.1 NC_019919_p148 hypothetical protein phrog_3802 terminase small subunit head and packaging -1 108716 109210
YP_007237002.1 NC_019919_p28 hypothetical protein phrog_13127 unknown function unknown function -1 15758 16171
YP_009237913.1 NC_019919_p5 A1 protein precursor phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 3367 3591
YP_009237916.1 NC_019919_p15 hypothetical protein singleton unknown function unknown function 1 9861 10067
YP_009237920.1 NC_019919_p155 hypothetical protein phrog_8297 unknown function unknown function -1 114083 114340
YP_007237081.1 NC_019919_p107 phage-associated homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 64417 64914
YP_007237109.1 NC_019919_p135 phage tail length tape-measure protein phrog_3779 tail length tape measure protein tail -1 94359 98039
YP_007237064.1 NC_019919_p90 ribonucleotide reductase of class Ia (aerobic), beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 49992 51137
YP_007237075.1 NC_019919_p101 hypothetical protein phrog_11166 unknown function unknown function 1 59155 59340
YP_007237087.1 NC_019919_p113 DNA ligase, phage-associated phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 67383 68360
YP_007237041.1 NC_019919_p67 hypothetical protein phrog_4551 unknown function unknown function -1 35876 36148
YP_007237063.1 NC_019919_p89 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 49465 49992
YP_007237026.1 NC_019919_p52 hypothetical protein phrog_1235 unknown function unknown function -1 27547 27732
YP_007237106.1 NC_019919_p132 phage tail fibers phrog_3890 straight fibre tail protein tail -1 88749 90797
YP_007237073.1 NC_019919_p99 NAD-dependent protein deacetylase of SIR2 family phrog_2162 Sir2 (NAD-dependent deacetylase) DNA, RNA and nucleotide metabolism 1 58364 59014
YP_007237113.1 NC_019919_p139 phage major tail protein phrog_3575 major tail protein tail -1 99863 101263
YP_007236989.1 NC_019919_p12 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover 1 7926 8138
YP_007237068.1 NC_019919_p94 hypothetical protein singleton unknown function unknown function -1 54203 54379
YP_007237117.1 NC_019919_p143 phage major capsid protein phrog_10 major head protein head and packaging -1 103118 104500
YP_009237922.1 NC_019919_p157 A1 protein precursor phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 116162 116386
YP_007237099.1 NC_019919_p125 phage ribonuclease H phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 81582 82454
YP_007237056.1 NC_019919_p82 hypothetical protein phrog_4586 unknown function unknown function -1 45763 45963
YP_007237114.1 NC_019919_p140 hypothetical protein phrog_3907 tail terminator connector -1 101290 101775
YP_007237090.1 NC_019919_p116 D6 protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 70191 71657
YP_007237023.1 NC_019919_p49 hypothetical protein phrog_4821 unknown function unknown function -1 26485 26784
YP_007237040.1 NC_019919_p66 hypothetical protein phrog_5876 unknown function unknown function -1 35052 35324
YP_007237088.1 NC_019919_p114 DNA ligase, phage-associated phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 68563 69342
YP_007236984.1 NC_019919_p7 hypothetical protein phrog_3747 unknown function unknown function -1 4314 4565
YP_009237930.1 NC_019919_p165 hypothetical protein phrog_4379 unknown function unknown function 1 120935 121282
YP_007237001.1 NC_019919_p27 hypothetical protein phrog_4984 unknown function unknown function -1 15477 15758
YP_007237054.1 NC_019919_p80 hypothetical protein phrog_5252 unknown function unknown function -1 44779 44961
YP_007237100.1 NC_019919_p126 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 82454 82900
YP_007237058.1 NC_019919_p84 hypothetical protein phrog_4516 unknown function unknown function -1 46271 46783
YP_009237924.1 NC_019919_p159 hypothetical protein phrog_3747 unknown function unknown function -1 117109 117360
YP_007237018.1 NC_019919_p44 hypothetical protein phrog_739 Rz-like spanin lysis -1 24157 24534
YP_009237925.1 NC_019919_p160 hypothetical protein phrog_4718 unknown function unknown function -1 117526 117735
YP_007237030.1 NC_019919_p56 hypothetical protein phrog_5598 unknown function unknown function -1 29771 29992
YP_007237031.1 NC_019919_p57 hypothetical protein phrog_2210 unknown function unknown function -1 30256 30456
YP_007237101.1 NC_019919_p127 hypothetical protein phrog_5592 unknown function unknown function 1 82863 83117
YP_009237921.1 NC_019919_p156 hypothetical protein phrog_1745 DNA transfer protein other -1 114392 116056
YP_007237065.1 NC_019919_p91 phage-associated homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 51204 51686
YP_007237025.1 NC_019919_p51 hypothetical protein phrog_5021 unknown function unknown function -1 27134 27487
YP_009237918.1 NC_019919_p153 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 112835 113569
YP_007237093.1 NC_019919_p119 hypothetical protein phrog_19628 unknown function unknown function 1 75378 75665
YP_009237915.1 NC_019919_p14 hypothetical protein phrog_12351 unknown function unknown function 1 8540 8779
YP_007237107.1 NC_019919_p133 phage tail length tape-measure protein phrog_31 central tail fiber J tail -1 90798 93638
YP_007237050.1 NC_019919_p76 hypothetical protein phrog_5077 unknown function unknown function -1 42634 42804
YP_007237118.1 NC_019919_p144 phage capsid and scaffold phrog_80 head maturation protease head and packaging -1 104516 105148
YP_007237082.1 NC_019919_p108 D2 protein phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 64981 65682
YP_007237084.1 NC_019919_p110 hypothetical protein phrog_3696 unknown function unknown function 1 66450 66746
YP_007237116.1 NC_019919_p142 hypothetical protein phrog_442 head-tail adaptor connector -1 102546 103058
YP_007237062.1 NC_019919_p88 Thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 48626 49465
YP_007237009.1 NC_019919_p35 thioredoxin, phage-associated phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 19298 19588
YP_007237053.1 NC_019919_p79 Phage tail fiber protein phrog_1491 tail fiber protein tail -1 44089 44727
YP_007237043.1 NC_019919_p69 hypothetical protein phrog_5441 unknown function unknown function -1 36449 36583
YP_007237021.1 NC_019919_p47 hypothetical protein phrog_5792 unknown function unknown function -1 25823 26119
YP_009237917.1 NC_019919_p152 hypothetical protein phrog_6447 membrane protein moron, auxiliary metabolic gene and host takeover 1 112357 112605
YP_007237125.1 NC_019919_p151 hypothetical protein phrog_5851 unknown function unknown function 1 112170 112364
YP_009237914.1 NC_019919_p13 hypothetical protein phrog_4379 unknown function unknown function 1 8140 8487
YP_007237077.1 NC_019919_p103 hypothetical protein phrog_2502 unknown function unknown function 1 59836 60255
YP_007237091.1 NC_019919_p117 DNA primase / DNA helicase, phage-associated phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 71654 72544
YP_007237051.1 NC_019919_p77 hypothetical protein phrog_938 endolysin lysis -1 42874 43320
YP_007237061.1 NC_019919_p87 hypothetical protein phrog_1040 peptidase HslV family other -1 47701 48279
YP_007237049.1 NC_019919_p75 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 42200 42634
YP_007237074.1 NC_019919_p100 hypothetical protein phrog_5116 unknown function unknown function 1 58992 59174
YP_007236988.1 NC_019919_p11 hypothetical protein phrog_5607 unknown function unknown function 1 7741 7923
YP_007236987.1 NC_019919_p10 hypothetical protein phrog_5145 unknown function unknown function 1 7459 7686
YP_007237115.1 NC_019919_p141 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 101779 102546
YP_007237010.1 NC_019919_p36 hypothetical protein phrog_4328 unknown function unknown function -1 19585 19986
YP_007237060.1 NC_019919_p86 Phage ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 47212 47697
YP_007237120.1 NC_019919_p146 portal protein phrog_12 portal protein head and packaging -1 105625 106851
YP_007237042.1 NC_019919_p68 hypothetical protein phrog_5153 unknown function unknown function -1 36242 36448
YP_007237110.1 NC_019919_p136 hypothetical protein phrog_3914 tail assembly chaperone tail -1 98120 98452
YP_007237011.1 NC_019919_p37 hypothetical protein phrog_32393 unknown function unknown function -1 20367 20492
YP_009237927.1 NC_019919_p162 hypothetical protein phrog_5145 unknown function unknown function 1 120254 120481
YP_007237085.1 NC_019919_p111 hypothetical protein phrog_20800 unknown function unknown function 1 66917 67105
YP_007237017.1 NC_019919_p43 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 23478 24176
YP_007236990.1 NC_019919_p16 hypothetical protein phrog_8583 unknown function unknown function -1 10639 11487
YP_007237007.1 NC_019919_p33 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 18053 18913
YP_007237086.1 NC_019919_p112 hypothetical protein phrog_8267 unknown function unknown function 1 67193 67393
YP_007237089.1 NC_019919_p115 D5 protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 69335 70102
YP_007237036.1 NC_019919_p62 hypothetical protein singleton unknown function unknown function -1 33745 33897
YP_007236992.1 NC_019919_p18 hypothetical protein singleton unknown function unknown function -1 12171 12305
YP_007237103.1 NC_019919_p129 phage tail assembly chaperone gp38 phrog_188 tail fiber assembly protein tail -1 85171 85557
YP_007237000.1 NC_019919_p26 hypothetical protein phrog_4804 unknown function unknown function -1 15235 15474
YP_007237022.1 NC_019919_p48 hypothetical protein phrog_5486 unknown function unknown function -1 26073 26492
YP_007237014.1 NC_019919_p40 ATP-dependent Clp protease proteolytic subunit phrog_1827 ATP-dependent protease other -1 21773 22372
YP_007237024.1 NC_019919_p50 hypothetical protein phrog_2855 unknown function unknown function -1 26784 27056
YP_007236991.1 NC_019919_p17 hypothetical protein phrog_5271 unknown function unknown function -1 11560 12171
YP_007237019.1 NC_019919_p45 hypothetical protein phrog_4243 unknown function unknown function -1 24545 25243
YP_007237104.1 NC_019919_p130 phage tail fibers phrog_10305 tail fiber protein tail -1 85554 88322
YP_009237923.1 NC_019919_p158 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 116450 116866
YP_007237066.1 NC_019919_p92 ribonucleotide reductase of class Ia (aerobic), alpha subunit phrog_3844 NrdA-like aerobic NDP reductase large subunit moron, auxiliary metabolic gene and host takeover -1 51743 53095
YP_007237047.1 NC_019919_p73 nicotinamide-nucleotide adenylyltransferase phrog_3462 nicotinamide-nucleotide adenylyltransferase moron, auxiliary metabolic gene and host takeover -1 38201 39256
YP_009237928.1 NC_019919_p163 hypothetical protein phrog_5607 unknown function unknown function 1 120536 120718
YP_007237119.1 NC_019919_p145 phage neck whiskers phrog_215 structural protein with Ig domain head and packaging -1 105152 105628
YP_007237033.1 NC_019919_p59 hypothetical protein phrog_7572 unknown function unknown function -1 31984 32358
YP_007237079.1 NC_019919_p105 hypothetical protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 61415 64204
YP_007237124.1 NC_019919_p150 receptor-blocking protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 111061 111324
YP_007237029.1 NC_019919_p55 hypothetical protein phrog_5919 unknown function unknown function -1 29614 29778
YP_007236996.1 NC_019919_p22 hypothetical protein phrog_4182 unknown function unknown function -1 13390 13821
YP_007237096.1 NC_019919_p122 recombination endonuclease, subunit D12 phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 78555 79277
YP_007236994.1 NC_019919_p20 hypothetical protein singleton unknown function unknown function -1 12607 12759
YP_007237044.1 NC_019919_p70 hypothetical protein phrog_9447 unknown function unknown function -1 36695 37048
YP_007237048.1 NC_019919_p74 hypothetical protein phrog_200 lipoprotein other -1 39518 40468
YP_007237092.1 NC_019919_p118 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 72605 75175
YP_007237112.1 NC_019919_p138 phage tail fibers phrog_3889 base plate tail tube protein tail -1 98947 99852
YP_007237032.1 NC_019919_p58 hypothetical protein phrog_14410 unknown function unknown function -1 30957 31160
YP_007237006.1 NC_019919_p32 hypothetical protein phrog_7810 unknown function unknown function -1 17694 18053
YP_007237045.1 NC_019919_p71 hypothetical protein phrog_6060 anti-termination protein Q-like transcription regulation -1 37048 37236
YP_007237121.1 NC_019919_p147 may contain ATP/GTP binding motif phrog_2 terminase large subunit head and packaging -1 107400 108716
YP_007236981.1 NC_019919_p2 hypothetical protein phrog_4576 unknown function unknown function -1 861 1259
YP_009237929.1 NC_019919_p164 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover 1 120721 120933
YP_007236982.1 NC_019919_p4 A1 phrog_1745 DNA transfer protein other -1 1597 3261
YP_007237102.1 NC_019919_p128 phage tail fiber protein phrog_6921 tail fiber protein tail -1 83160 85127
YP_007237012.1 NC_019919_p38 lysozyme phrog_465 endolysin lysis -1 20551 20964
YP_007237059.1 NC_019919_p85 hypothetical protein phrog_4593 unknown function unknown function -1 46865 47143
YP_007237037.1 NC_019919_p63 hypothetical protein phrog_5473 unknown function unknown function -1 33997 34179
YP_007237035.1 NC_019919_p61 hypothetical protein singleton unknown function unknown function -1 33551 33697
YP_007237039.1 NC_019919_p65 hypothetical protein phrog_8408 unknown function unknown function -1 34777 35001
YP_007237078.1 NC_019919_p104 hypothetical protein phrog_2502 unknown function unknown function 1 60265 60702
YP_007237046.1 NC_019919_p72 ribosyl nicotinamide transporter, PnuC-like phrog_1880 PnuC-like nicotinamide mononucleotide transport moron, auxiliary metabolic gene and host takeover -1 37522 38199
YP_007237111.1 NC_019919_p137 hypothetical protein phrog_313 Tail assembly chaperone tail -1 98550 98954
YP_007236983.1 NC_019919_p6 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 3655 4071
YP_007237070.1 NC_019919_p96 H-N-H-endonuclease F-TflVI phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 55553 56053
YP_007237038.1 NC_019919_p64 hypothetical protein phrog_7042 unknown function unknown function -1 34592 34780
YP_007237015.1 NC_019919_p41 deoxynucleoside-5'-monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 22385 23137
YP_007237004.1 NC_019919_p30 hypothetical protein phrog_4979 unknown function unknown function -1 16500 16928
YP_007237016.1 NC_019919_p42 hypothetical protein phrog_812 Rz-like spanin lysis -1 23137 23490
YP_009237912.1 NC_019919_p3 hypothetical protein phrog_8297 unknown function unknown function -1 1288 1545
YP_007237076.1 NC_019919_p102 hypothetical protein phrog_1818 unknown function unknown function 1 59294 59833
YP_007237067.1 NC_019919_p93 ribonucleotide reductase of class Ia (aerobic), alpha subunit singleton unknown function unknown function -1 53144 54079
YP_007237095.1 NC_019919_p121 hypothetical protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 77483 78259
YP_007237083.1 NC_019919_p109 D3 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 66003 66416
YP_007237008.1 NC_019919_p34 hypothetical protein phrog_8826 unknown function unknown function -1 18916 19197
YP_007236998.1 NC_019919_p24 hypothetical protein singleton unknown function unknown function -1 14613 14777
YP_007237108.1 NC_019919_p134 hypothetical protein phrog_1302 distal tail protein tail -1 93635 94249
YP_007237028.1 NC_019919_p54 hypothetical protein phrog_4760 unknown function unknown function -1 28985 29278
YP_007237003.1 NC_019919_p29 hypothetical protein phrog_3880 unknown function unknown function -1 16171 16422
YP_007237057.1 NC_019919_p83 hypothetical protein phrog_2380 unknown function unknown function -1 46003 46221
YP_009237919.1 NC_019919_p154 hypothetical protein phrog_4576 unknown function unknown function -1 113656 114054
YP_007236993.1 NC_019919_p19 hypothetical protein singleton unknown function unknown function -1 12416 12622
YP_007237072.1 NC_019919_p98 hypothetical protein phrog_5827 unknown function unknown function 1 57993 58211
YP_007237098.1 NC_019919_p124 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 81100 81582
YP_007237069.1 NC_019919_p95 phosphate starvation-inducible protein PhoH,predicted ATPase phrog_170 PhoH-like phosphate starvation-inducible other -1 54447 55202
YP_007237027.1 NC_019919_p53 hypothetical protein singleton unknown function unknown function -1 27793 28158
YP_007237020.1 NC_019919_p46 hypothetical protein phrog_5265 unknown function unknown function -1 25542 25826
YP_007236980.1 NC_019919_p1 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 40 774
YP_007237097.1 NC_019919_p123 hypothetical protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 79300 81096
YP_007237071.1 NC_019919_p97 ribonucleotide reductase of class III (anaerobic), large subunit phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 56046 57893
YP_007236997.1 NC_019919_p23 hypothetical protein phrog_4905 unknown function unknown function -1 13833 14207
YP_007237080.1 NC_019919_p106 hypothetical protein singleton unknown function unknown function 1 64208 64372
YP_007237055.1 NC_019919_p81 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 45033 45713
YP_007237123.1 NC_019919_p149 receptor-binding tail protein phrog_4815 receptor binding tail protein tail -1 109210 110973