Genomic map of Staphylococcus phage phi5967PVL (NC_019921)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019921
Definition
Staphylococcus phage phi5967PVL DNA, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus.
DB of origin
REFSEQ
Length
42461
Host Name
Staphylococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
42
%GC
33.31
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007237146.1 NC_019921_p17 phi ETA orf 25-like protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 13355 13759
YP_007237166.1 NC_019921_p37 hypothetical protein phrog_1747 unknown function unknown function 1 37250 37537
YP_007237153.1 NC_019921_p24 hypothetical protein phrog_1066 unknown function unknown function 1 18810 19199
YP_007237130.1 NC_019921_p1 integrase phrog_1 integrase integration and excision -1 338 1543
YP_007237158.1 NC_019921_p29 hypothetical protein phrog_25 head closure Hc1 connector 1 24512 24874
YP_007237143.1 NC_019921_p14 hypothetical protein phrog_398 unknown function unknown function 1 10240 10914
YP_007237144.1 NC_019921_p15 rep protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 11310 12170
YP_007237159.1 NC_019921_p30 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 24871 25275
YP_007237165.1 NC_019921_p36 phage minor structural protein phrog_1786 minor head protein head and packaging 1 33276 37061
YP_007237151.1 NC_019921_p22 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 17777 18193
YP_007237161.1 NC_019921_p32 phi13 family phage major tail protein phrog_88 major tail protein tail 1 25680 26324
YP_007237154.1 NC_019921_p25 phage terminase large subunit phrog_9 terminase large subunit head and packaging 1 19196 20857
YP_007237157.1 NC_019921_p28 phage major capsid protein phrog_10 major head protein head and packaging 1 22805 23950
YP_007237169.1 NC_019921_p40 amidase phrog_489 endolysin lysis 1 38406 39860
YP_007237156.1 NC_019921_p27 S14 family endopeptidase ClpP phrog_94 head maturation protease head and packaging 1 22038 22781
YP_007237170.1 NC_019921_p41 Panton-Valentine leukocidin chain S phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 40241 41188
YP_007237136.1 NC_019921_p7 hypothetical protein phrog_6623 unknown function unknown function 1 6910 7236
YP_007237148.1 NC_019921_p19 phi PVL ORF 52 family protein phrog_266 unknown function unknown function 1 14558 14818
YP_007237145.1 NC_019921_p16 hypothetical protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 12180 12959
YP_007237163.1 NC_019921_p34 phage tail tape measure protein phrog_167 tail length tape measure protein tail 1 27235 31776
YP_007237138.1 NC_019921_p9 hypothetical protein phrog_2182 unknown function unknown function 1 8006 8323
YP_007237132.1 NC_019921_p3 repressor phrog_4 transcriptional repressor transcription regulation -1 3183 3890
YP_007237140.1 NC_019921_p11 hypothetical protein phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 8601 9137
YP_007237167.1 NC_019921_p38 hypothetical protein phrog_3700 unknown function unknown function 1 37593 37967
YP_007237149.1 NC_019921_p20 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 15440 15946
YP_007237139.1 NC_019921_p10 hypothetical protein phrog_401 unknown function unknown function 1 8328 8588
YP_007237142.1 NC_019921_p13 ssDNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 9785 10228
YP_007237168.1 NC_019921_p39 holin phrog_263 holin lysis 1 38048 38395
YP_007237147.1 NC_019921_p18 phi PVL orf 50 family protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 13950 14306
YP_007237160.1 NC_019921_p31 hypothetical protein phrog_78 tail terminator connector 1 25272 25679
YP_007237134.1 NC_019921_p5 hypothetical protein phrog_847 anti-repressor Ant transcription regulation 1 4313 4756
YP_007237137.1 NC_019921_p8 hypothetical protein phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 7481 7744
YP_007237135.1 NC_019921_p6 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 5651 6403
YP_007237133.1 NC_019921_p4 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 4061 4300
YP_007237131.1 NC_019921_p2 phi PVL ORF 30 analogue phrog_716 Na/K ATPase other 1 1669 2283
YP_007237152.1 NC_019921_p23 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 18425 18724
YP_007237150.1 NC_019921_p21 hypothetical protein phrog_5652 unknown function unknown function 1 16899 17549
YP_007237155.1 NC_019921_p26 phage portal protein phrog_12 portal protein head and packaging 1 20873 22060
YP_007237164.1 NC_019921_p35 phi PVL orfs 18-19-like protein phrog_202 distal tail protein Dit tail 1 31776 33260
YP_007237171.1 NC_019921_p42 Panton-Valentine leukocidin chain S phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 41190 42167
YP_007237141.1 NC_019921_p12 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9138 9788
YP_007237162.1 NC_019921_p33 hypothetical protein phrog_187 head-tail adaptor connector 1 26640 26990