| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019921 |
Definition |
Staphylococcus phage phi5967PVL DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus. |
DB of origin |
REFSEQ |
Length |
42461 |
Host Name |
Staphylococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
42 |
%GC |
33.31 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007237146.1 | NC_019921_p17 | phi ETA orf 25-like protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 13355 | 13759 |
| YP_007237166.1 | NC_019921_p37 | hypothetical protein | phrog_1747 | unknown function | unknown function | 1 | 37250 | 37537 |
| YP_007237153.1 | NC_019921_p24 | hypothetical protein | phrog_1066 | unknown function | unknown function | 1 | 18810 | 19199 |
| YP_007237130.1 | NC_019921_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 338 | 1543 |
| YP_007237158.1 | NC_019921_p29 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 24512 | 24874 |
| YP_007237143.1 | NC_019921_p14 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 10240 | 10914 |
| YP_007237144.1 | NC_019921_p15 | rep protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 11310 | 12170 |
| YP_007237159.1 | NC_019921_p30 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 24871 | 25275 |
| YP_007237165.1 | NC_019921_p36 | phage minor structural protein | phrog_1786 | minor head protein | head and packaging | 1 | 33276 | 37061 |
| YP_007237151.1 | NC_019921_p22 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 17777 | 18193 |
| YP_007237161.1 | NC_019921_p32 | phi13 family phage major tail protein | phrog_88 | major tail protein | tail | 1 | 25680 | 26324 |
| YP_007237154.1 | NC_019921_p25 | phage terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 19196 | 20857 |
| YP_007237157.1 | NC_019921_p28 | phage major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 22805 | 23950 |
| YP_007237169.1 | NC_019921_p40 | amidase | phrog_489 | endolysin | lysis | 1 | 38406 | 39860 |
| YP_007237156.1 | NC_019921_p27 | S14 family endopeptidase ClpP | phrog_94 | head maturation protease | head and packaging | 1 | 22038 | 22781 |
| YP_007237170.1 | NC_019921_p41 | Panton-Valentine leukocidin chain S | phrog_965 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 40241 | 41188 |
| YP_007237136.1 | NC_019921_p7 | hypothetical protein | phrog_6623 | unknown function | unknown function | 1 | 6910 | 7236 |
| YP_007237148.1 | NC_019921_p19 | phi PVL ORF 52 family protein | phrog_266 | unknown function | unknown function | 1 | 14558 | 14818 |
| YP_007237145.1 | NC_019921_p16 | hypothetical protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 12180 | 12959 |
| YP_007237163.1 | NC_019921_p34 | phage tail tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 27235 | 31776 |
| YP_007237138.1 | NC_019921_p9 | hypothetical protein | phrog_2182 | unknown function | unknown function | 1 | 8006 | 8323 |
| YP_007237132.1 | NC_019921_p3 | repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 3183 | 3890 |
| YP_007237140.1 | NC_019921_p11 | hypothetical protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 8601 | 9137 |
| YP_007237167.1 | NC_019921_p38 | hypothetical protein | phrog_3700 | unknown function | unknown function | 1 | 37593 | 37967 |
| YP_007237149.1 | NC_019921_p20 | hypothetical protein | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 15440 | 15946 |
| YP_007237139.1 | NC_019921_p10 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 8328 | 8588 |
| YP_007237142.1 | NC_019921_p13 | ssDNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 9785 | 10228 |
| YP_007237168.1 | NC_019921_p39 | holin | phrog_263 | holin | lysis | 1 | 38048 | 38395 |
| YP_007237147.1 | NC_019921_p18 | phi PVL orf 50 family protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 13950 | 14306 |
| YP_007237160.1 | NC_019921_p31 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 25272 | 25679 |
| YP_007237134.1 | NC_019921_p5 | hypothetical protein | phrog_847 | anti-repressor Ant | transcription regulation | 1 | 4313 | 4756 |
| YP_007237137.1 | NC_019921_p8 | hypothetical protein | phrog_534 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7481 | 7744 |
| YP_007237135.1 | NC_019921_p6 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 5651 | 6403 |
| YP_007237133.1 | NC_019921_p4 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4061 | 4300 |
| YP_007237131.1 | NC_019921_p2 | phi PVL ORF 30 analogue | phrog_716 | Na/K ATPase | other | 1 | 1669 | 2283 |
| YP_007237152.1 | NC_019921_p23 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 18425 | 18724 |
| YP_007237150.1 | NC_019921_p21 | hypothetical protein | phrog_5652 | unknown function | unknown function | 1 | 16899 | 17549 |
| YP_007237155.1 | NC_019921_p26 | phage portal protein | phrog_12 | portal protein | head and packaging | 1 | 20873 | 22060 |
| YP_007237164.1 | NC_019921_p35 | phi PVL orfs 18-19-like protein | phrog_202 | distal tail protein Dit | tail | 1 | 31776 | 33260 |
| YP_007237171.1 | NC_019921_p42 | Panton-Valentine leukocidin chain S | phrog_965 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 41190 | 42167 |
| YP_007237141.1 | NC_019921_p12 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9138 | 9788 |
| YP_007237162.1 | NC_019921_p33 | hypothetical protein | phrog_187 | head-tail adaptor | connector | 1 | 26640 | 26990 |