Genomic map of Pseudomonas phage AF (NC_019923)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019923
Definition
Pseudomonas phage AF, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
42689
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
65
%GC
58.43
Number of singletons
22
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007237223.1 NC_019923_p48 tellurite resistance protein phrog_632 tellurite resistance moron, auxiliary metabolic gene and host takeover -1 35111 35545
YP_007237222.1 NC_019923_p47 hypothetical protein singleton unknown function unknown function -1 34487 34834
YP_007237232.1 NC_019923_p57 hypothetical protein singleton unknown function unknown function 1 39900 40307
YP_007237185.1 NC_019923_p10 hypothetical protein singleton unknown function unknown function 1 7156 7473
YP_007237196.1 NC_019923_p21 Rz-like protein phrog_1026 Rz-like spanin lysis 1 23723 23971
YP_007237215.1 NC_019923_p40 hypothetical protein singleton unknown function unknown function -1 32021 32365
YP_007237239.1 NC_019923_p64 enoddeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 41582 42025
YP_007237226.1 NC_019923_p51 replication initiation protein phrog_678 replication initiation O-like DNA, RNA and nucleotide metabolism 1 36451 37236
YP_007237229.1 NC_019923_p54 hypothetical protein singleton unknown function unknown function 1 39197 39349
YP_007237184.1 NC_019923_p9 hypothetical protein phrog_427 unknown function unknown function 1 6697 7146
YP_007237214.1 NC_019923_p39 ERF family protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31275 32024
YP_007237182.1 NC_019923_p7 endoprotease phrog_458 protease other 1 4905 5636
YP_007237197.1 NC_019923_p22 Rz1-like protein phrog_1275 Rz-like spanin lysis 1 23895 24098
YP_007237187.1 NC_019923_p12 hypothetical protein phrog_376 tail protein tail 1 8127 10478
YP_007237217.1 NC_019923_p42 hypothetical protein phrog_8110 unknown function unknown function -1 32858 33031
YP_007237209.1 NC_019923_p34 hypothetical protein singleton unknown function unknown function -1 28271 28654
YP_007237191.1 NC_019923_p16 hypothetical protein phrog_9880 unknown function unknown function 1 13596 20237
YP_007237207.1 NC_019923_p32 hypothetical protein singleton unknown function unknown function -1 27947 28078
YP_007237205.1 NC_019923_p30 hypothetical protein singleton unknown function unknown function -1 26991 27686
YP_007237235.1 NC_019923_p60 hypothetical protein singleton unknown function unknown function 1 40686 40877
YP_007237193.1 NC_019923_p18 class I holin phrog_217 holin lysis 1 20675 20992
YP_007237211.1 NC_019923_p36 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 29701 30249
YP_007237227.1 NC_019923_p52 DNA primase\helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 37236 39035
YP_007237238.1 NC_019923_p63 hypothetical protein singleton unknown function unknown function 1 41337 41585
YP_007237190.1 NC_019923_p15 structural lysozyme phrog_10475 endolysin lysis 1 11497 13599
YP_007237202.1 NC_019923_p27 hypothetical protein singleton unknown function unknown function -1 26232 26423
YP_007237199.1 NC_019923_p24 hypothetical protein phrog_35311 unknown function unknown function 1 24431 24811
YP_007237186.1 NC_019923_p11 tail tubular protein A phrog_394 tail protein tail 1 7525 8130
YP_007237176.1 NC_019923_p1 terminase small subunit phrog_51 terminase small subunit head and packaging 1 63 629
YP_007237224.1 NC_019923_p49 repressor-like protein singleton transcriptional repressor transcription regulation 1 35835 36104
YP_007237181.1 NC_019923_p6 hypothetical protein singleton unknown function unknown function 1 4609 4908
YP_007237203.1 NC_019923_p28 anti-R-Lar restriction alleviation protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 26420 26761
YP_007237220.1 NC_019923_p45 hypothetical protein phrog_19821 unknown function unknown function -1 33506 33739
YP_007237204.1 NC_019923_p29 hypothetical protein singleton unknown function unknown function -1 26758 26994
YP_007237225.1 NC_019923_p50 HNH endonuclease phrog_2118 HNH endonuclease DNA, RNA and nucleotide metabolism 1 36108 36467
YP_007237233.1 NC_019923_p58 hypothetical protein singleton unknown function unknown function 1 40304 40519
YP_007237201.1 NC_019923_p26 hypothetical protein phrog_13684 unknown function unknown function -1 25888 26244
YP_007237212.1 NC_019923_p37 recombination protein NinB phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism -1 30242 30652
YP_007237198.1 NC_019923_p23 hypothetical protein phrog_4770 unknown function unknown function 1 24138 24434
YP_007237219.1 NC_019923_p44 hypothetical protein singleton unknown function unknown function -1 33273 33506
YP_007237236.1 NC_019923_p61 hypothetical protein phrog_17140 unknown function unknown function 1 40874 41065
YP_007237221.1 NC_019923_p46 hypothetical protein phrog_18326 unknown function unknown function -1 33736 34344
YP_007237179.1 NC_019923_p4 hypothetical protein phrog_4893 unknown function unknown function 1 2561 2893
YP_007237231.1 NC_019923_p56 hypothetical protein phrog_343 unknown function unknown function 1 39643 39903
YP_007237180.1 NC_019923_p5 head-to-tail-connector phrog_332 head-tail adaptor connector 1 2897 4591
YP_007237218.1 NC_019923_p43 hypothetical protein phrog_36830 unknown function unknown function -1 33024 33260
YP_007237213.1 NC_019923_p38 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 30655 31278
YP_007237183.1 NC_019923_p8 major capsid protein phrog_212 major head protein head and packaging 1 5664 6665
YP_007237234.1 NC_019923_p59 hypothetical protein singleton unknown function unknown function 1 40516 40689
YP_007237200.1 NC_019923_p25 hypothetical protein phrog_31472 unknown function unknown function 1 24808 25830
YP_007237208.1 NC_019923_p33 hypothetical protein singleton unknown function unknown function -1 28075 28263
YP_007237216.1 NC_019923_p41 hypothetical protein phrog_1934 unknown function unknown function -1 32456 32854
YP_007237237.1 NC_019923_p62 hypothetical protein phrog_5585 unknown function unknown function 1 41062 41340
YP_007237210.1 NC_019923_p35 DNA segregation ATPase FtsK/SpoIIIE phrog_6576 unknown function unknown function -1 28704 29720
YP_007237192.1 NC_019923_p17 class I holin phrog_198 holin lysis 1 20299 20685
YP_007237206.1 NC_019923_p31 hypothetical protein singleton unknown function unknown function -1 27683 27946
YP_007237230.1 NC_019923_p55 hypothetical protein singleton unknown function unknown function 1 39346 39630
YP_007237178.1 NC_019923_p3 acetyltransferase singleton unknown function unknown function 1 2127 2555
YP_007237228.1 NC_019923_p53 hypothetical protein singleton unknown function unknown function 1 39032 39178
YP_007237194.1 NC_019923_p19 tail spike protein phrog_27277 tail spike protein tail 1 20994 23219
YP_007237188.1 NC_019923_p13 internal virion protein A phrog_308 internal virion protein head and packaging 1 10475 10927
YP_007237189.1 NC_019923_p14 internal virion protein B phrog_418 internal virion protein head and packaging 1 10930 11487
YP_007237177.1 NC_019923_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 622 2130
YP_007237195.1 NC_019923_p20 endolysin phrog_315 endolysin lysis 1 23240 23719
YP_007237240.1 NC_019923_p65 hypothetical protein phrog_5335 unknown function unknown function 1 42196 42660