| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020078 |
Definition |
Cronobacter sakazakii phage vB_CskP_GAP227, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Cronosvirus; Cronobacter virus GAP227. |
DB of origin |
REFSEQ |
Length |
41796 |
Host Name |
Cronobacter sakazakii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
55.73 |
Number of singletons |
7 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007348351.1 | NC_020078_p32 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 19515 | 19943 |
| YP_007348333.1 | NC_020078_p14 | hypothetical protein | phrog_11140 | unknown function | unknown function | 1 | 6037 | 6261 |
| YP_007348352.1 | NC_020078_p33 | hypothetical protein | phrog_6529 | unknown function | unknown function | 1 | 19943 | 20362 |
| YP_007348355.1 | NC_020078_p36 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 22834 | 23853 |
| YP_007348346.1 | NC_020078_p27 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 16015 | 16344 |
| YP_007348359.1 | NC_020078_p40 | hypothetical protein | phrog_3883 | internal virion protein | head and packaging | 1 | 27977 | 30229 |
| YP_007348368.1 | NC_020078_p49 | hypothetical protein | phrog_13582 | unknown function | unknown function | 1 | 41006 | 41188 |
| YP_007348334.1 | NC_020078_p15 | DNA primase | phrog_8634 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 6274 | 6990 |
| YP_007348344.1 | NC_020078_p25 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 14747 | 15790 |
| YP_007348332.1 | NC_020078_p13 | hypothetical protein | phrog_5965 | unknown function | unknown function | 1 | 5774 | 6037 |
| YP_007348321.1 | NC_020078_p2 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 1506 | 2045 |
| YP_007348324.1 | NC_020078_p5 | hypothetical protein | phrog_18383 | unknown function | unknown function | 1 | 2773 | 3267 |
| YP_007348343.1 | NC_020078_p24 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 14283 | 14747 |
| YP_007348330.1 | NC_020078_p11 | hypothetical protein | phrog_9577 | unknown function | unknown function | 1 | 5012 | 5440 |
| YP_007348356.1 | NC_020078_p37 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23928 | 24533 |
| YP_007348327.1 | NC_020078_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3819 | 4346 |
| YP_007348350.1 | NC_020078_p31 | hypothetical protein | phrog_5112 | unknown function | unknown function | 1 | 19343 | 19522 |
| YP_007348323.1 | NC_020078_p4 | hypothetical protein | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 2306 | 2710 |
| YP_007348362.1 | NC_020078_p43 | hypothetical protein | phrog_920 | holin | lysis | 1 | 36688 | 36876 |
| YP_007348353.1 | NC_020078_p34 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 20378 | 21898 |
| YP_007348342.1 | NC_020078_p23 | hypothetical protein | phrog_9561 | unknown function | unknown function | 1 | 13877 | 14290 |
| YP_007348329.1 | NC_020078_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4719 | 5015 |
| YP_007348360.1 | NC_020078_p41 | lytic glycosylase | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30232 | 34029 |
| YP_007348347.1 | NC_020078_p28 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 16344 | 16655 |
| YP_007348367.1 | NC_020078_p48 | hypothetical protein | phrog_214 | Rz-like spanin | lysis | 1 | 40657 | 41022 |
| YP_007348348.1 | NC_020078_p29 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 16639 | 16758 |
| YP_007348322.1 | NC_020078_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2119 | 2235 |
| YP_007348341.1 | NC_020078_p22 | DNA exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 12910 | 13872 |
| YP_007348320.1 | NC_020078_p1 | hypothetical protein | phrog_9286 | unknown function | unknown function | 1 | 656 | 958 |
| YP_007348338.1 | NC_020078_p19 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 8588 | 9493 |
| YP_007348335.1 | NC_020078_p16 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 6993 | 8237 |
| YP_007348349.1 | NC_020078_p30 | DNA-dependent RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 16758 | 19208 |
| YP_007348325.1 | NC_020078_p6 | hypothetical protein | phrog_28513 | unknown function | unknown function | 1 | 3260 | 3502 |
| YP_007348357.1 | NC_020078_p38 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24536 | 27169 |
| YP_007348331.1 | NC_020078_p12 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 5442 | 5768 |
| YP_007348340.1 | NC_020078_p21 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 12095 | 12910 |
| YP_007348337.1 | NC_020078_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8400 | 8591 |
| YP_007348365.1 | NC_020078_p46 | hypothetical protein | phrog_2973 | Hoc-like head decoration | head and packaging | 1 | 39164 | 40075 |
| YP_007348366.1 | NC_020078_p47 | endolysin | phrog_7 | endolysin | lysis | 1 | 40112 | 40660 |
| YP_007348326.1 | NC_020078_p7 | hypothetical protein | phrog_5136 | unknown function | unknown function | 1 | 3581 | 3808 |
| YP_007348328.1 | NC_020078_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4339 | 4722 |
| YP_007348354.1 | NC_020078_p35 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 21910 | 22746 |
| YP_007348361.1 | NC_020078_p42 | tail fiber protein | phrog_6117 | colanic acid degradation | moron, auxiliary metabolic gene and host takeover | 1 | 34101 | 36677 |
| YP_007348345.1 | NC_020078_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15777 | 16118 |
| YP_007348363.1 | NC_020078_p44 | hypothetical protein | phrog_9441 | terminase small subunit | head and packaging | 1 | 36860 | 37195 |
| YP_007348336.1 | NC_020078_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8270 | 8407 |
| YP_007348364.1 | NC_020078_p45 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 37195 | 39120 |
| YP_007348358.1 | NC_020078_p39 | hypothetical protein | phrog_5745 | internal virion protein | head and packaging | 1 | 27173 | 27967 |
| YP_007348339.1 | NC_020078_p20 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9559 | 12027 |