Genomic map of Cronobacter phage vB_CskP_GAP227 (NC_020078)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020078
Definition
Cronobacter sakazakii phage vB_CskP_GAP227, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Cronosvirus; Cronobacter virus GAP227.
DB of origin
REFSEQ
Length
41796
Host Name
Cronobacter sakazakii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
55.73
Number of singletons
7
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007348351.1 NC_020078_p32 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 19515 19943
YP_007348333.1 NC_020078_p14 hypothetical protein phrog_11140 unknown function unknown function 1 6037 6261
YP_007348352.1 NC_020078_p33 hypothetical protein phrog_6529 unknown function unknown function 1 19943 20362
YP_007348355.1 NC_020078_p36 major capsid protein phrog_267 major head protein head and packaging 1 22834 23853
YP_007348346.1 NC_020078_p27 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 16015 16344
YP_007348359.1 NC_020078_p40 hypothetical protein phrog_3883 internal virion protein head and packaging 1 27977 30229
YP_007348368.1 NC_020078_p49 hypothetical protein phrog_13582 unknown function unknown function 1 41006 41188
YP_007348334.1 NC_020078_p15 DNA primase phrog_8634 DNA primase DNA, RNA and nucleotide metabolism 1 6274 6990
YP_007348344.1 NC_020078_p25 hypothetical protein phrog_221 metallo-phosphoesterase other 1 14747 15790
YP_007348332.1 NC_020078_p13 hypothetical protein phrog_5965 unknown function unknown function 1 5774 6037
YP_007348321.1 NC_020078_p2 hypothetical protein phrog_1448 unknown function unknown function 1 1506 2045
YP_007348324.1 NC_020078_p5 hypothetical protein phrog_18383 unknown function unknown function 1 2773 3267
YP_007348343.1 NC_020078_p24 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 14283 14747
YP_007348330.1 NC_020078_p11 hypothetical protein phrog_9577 unknown function unknown function 1 5012 5440
YP_007348356.1 NC_020078_p37 tail tubular protein A phrog_446 tail protein tail 1 23928 24533
YP_007348327.1 NC_020078_p8 hypothetical protein singleton unknown function unknown function 1 3819 4346
YP_007348350.1 NC_020078_p31 hypothetical protein phrog_5112 unknown function unknown function 1 19343 19522
YP_007348323.1 NC_020078_p4 hypothetical protein phrog_2226 SAM-dependent methyltransferase other 1 2306 2710
YP_007348362.1 NC_020078_p43 hypothetical protein phrog_920 holin lysis 1 36688 36876
YP_007348353.1 NC_020078_p34 head-tail connector protein phrog_449 head-tail adaptor connector 1 20378 21898
YP_007348342.1 NC_020078_p23 hypothetical protein phrog_9561 unknown function unknown function 1 13877 14290
YP_007348329.1 NC_020078_p10 hypothetical protein singleton unknown function unknown function 1 4719 5015
YP_007348360.1 NC_020078_p41 lytic glycosylase phrog_342 internal virion protein with endolysin domain head and packaging 1 30232 34029
YP_007348347.1 NC_020078_p28 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 16344 16655
YP_007348367.1 NC_020078_p48 hypothetical protein phrog_214 Rz-like spanin lysis 1 40657 41022
YP_007348348.1 NC_020078_p29 hypothetical protein phrog_1312 unknown function unknown function 1 16639 16758
YP_007348322.1 NC_020078_p3 hypothetical protein singleton unknown function unknown function 1 2119 2235
YP_007348341.1 NC_020078_p22 DNA exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 12910 13872
YP_007348320.1 NC_020078_p1 hypothetical protein phrog_9286 unknown function unknown function 1 656 958
YP_007348338.1 NC_020078_p19 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 8588 9493
YP_007348335.1 NC_020078_p16 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 6993 8237
YP_007348349.1 NC_020078_p30 DNA-dependent RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 16758 19208
YP_007348325.1 NC_020078_p6 hypothetical protein phrog_28513 unknown function unknown function 1 3260 3502
YP_007348357.1 NC_020078_p38 tail tubular protein B phrog_457 tail protein tail 1 24536 27169
YP_007348331.1 NC_020078_p12 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 5442 5768
YP_007348340.1 NC_020078_p21 hypothetical protein phrog_862 unknown function unknown function 1 12095 12910
YP_007348337.1 NC_020078_p18 hypothetical protein singleton unknown function unknown function 1 8400 8591
YP_007348365.1 NC_020078_p46 hypothetical protein phrog_2973 Hoc-like head decoration head and packaging 1 39164 40075
YP_007348366.1 NC_020078_p47 endolysin phrog_7 endolysin lysis 1 40112 40660
YP_007348326.1 NC_020078_p7 hypothetical protein phrog_5136 unknown function unknown function 1 3581 3808
YP_007348328.1 NC_020078_p9 hypothetical protein singleton unknown function unknown function 1 4339 4722
YP_007348354.1 NC_020078_p35 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 21910 22746
YP_007348361.1 NC_020078_p42 tail fiber protein phrog_6117 colanic acid degradation moron, auxiliary metabolic gene and host takeover 1 34101 36677
YP_007348345.1 NC_020078_p26 hypothetical protein singleton unknown function unknown function 1 15777 16118
YP_007348363.1 NC_020078_p44 hypothetical protein phrog_9441 terminase small subunit head and packaging 1 36860 37195
YP_007348336.1 NC_020078_p17 hypothetical protein singleton unknown function unknown function 1 8270 8407
YP_007348364.1 NC_020078_p45 DNA maturase B phrog_38 terminase large subunit head and packaging 1 37195 39120
YP_007348358.1 NC_020078_p39 hypothetical protein phrog_5745 internal virion protein head and packaging 1 27173 27967
YP_007348339.1 NC_020078_p20 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 9559 12027