Genomic map of Halovirus HVTV-1 (NC_020158)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020158
Definition
Halovirus HVTV-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses; Haloviruses.
DB of origin
REFSEQ
Length
102319
Host Name
Haloarcula vallismortis
Host domain
Archaea
Is prophage?
undef
Number of proteins
173
%GC
58.27
Number of singletons
41
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007379043.1 NC_020158_p137 hypothetical protein singleton unknown function unknown function 1 90182 90943
YP_007379065.1 NC_020158_p159 hypothetical protein singleton unknown function unknown function 1 98590 98802
YP_007378930.1 NC_020158_p24 hypothetical protein phrog_37747 unknown function unknown function 1 9521 9697
YP_007379012.1 NC_020158_p106 hypothetical protein singleton unknown function unknown function -1 58552 58665
YP_007379015.1 NC_020158_p109 terminase large subunit phrog_2 terminase large subunit head and packaging 1 60303 61748
YP_007378914.1 NC_020158_p8 hypothetical protein phrog_28572 unknown function unknown function -1 2454 2591
YP_007378971.1 NC_020158_p65 hypothetical protein phrog_29634 unknown function unknown function 1 32427 33206
YP_007378919.1 NC_020158_p13 hypothetical protein phrog_26667 unknown function unknown function -1 3695 3883
YP_007379018.1 NC_020158_p112 hypothetical protein phrog_32688 unknown function unknown function 1 64229 67375
YP_007378954.1 NC_020158_p48 hypothetical protein phrog_14974 unknown function unknown function -1 22848 23000
YP_007378963.1 NC_020158_p57 hypothetical protein phrog_30928 unknown function unknown function -1 27910 28098
YP_007379042.1 NC_020158_p136 hypothetical protein phrog_18503 unknown function unknown function 1 89077 90180
YP_007379008.1 NC_020158_p102 hypothetical protein phrog_27930 unknown function unknown function -1 54664 56214
YP_007379056.1 NC_020158_p150 hypothetical protein phrog_36606 unknown function unknown function 1 95610 95792
YP_007379078.1 NC_020158_p172 hypothetical protein phrog_11023 homing endonuclease with LAGLIDADG motif DNA, RNA and nucleotide metabolism 1 100906 101463
YP_007379073.1 NC_020158_p167 hypothetical protein phrog_22958 unknown function unknown function 1 100031 100189
YP_007378993.1 NC_020158_p87 hypothetical protein singleton unknown function unknown function -1 43663 44133
YP_007379035.1 NC_020158_p129 tail assembly chaperone phrog_32593 tail assembly chaperone tail 1 81584 82000
YP_007378947.1 NC_020158_p41 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 20699 21184
YP_007378953.1 NC_020158_p47 hypothetical protein phrog_36117 unknown function unknown function -1 22721 22858
YP_007379034.1 NC_020158_p128 tail assembly chaperone phrog_35486 tail assembly chaperone tail 1 81584 82338
YP_007379054.1 NC_020158_p148 hypothetical protein phrog_22070 unknown function unknown function 1 95157 95396
YP_007379072.1 NC_020158_p166 hypothetical protein singleton unknown function unknown function 1 99853 100038
YP_007378974.1 NC_020158_p68 hypothetical protein phrog_23010 unknown function unknown function -1 33803 34963
YP_007379033.1 NC_020158_p127 hypothetical protein phrog_290 minor tail protein tail 1 80516 81529
YP_007378911.1 NC_020158_p5 hypothetical protein phrog_32068 unknown function unknown function -1 1825 2106
YP_007378926.1 NC_020158_p20 hypothetical protein phrog_24432 unknown function unknown function 1 5562 5954
YP_007379069.1 NC_020158_p163 hypothetical protein phrog_27644 unknown function unknown function 1 99300 99494
YP_007379049.1 NC_020158_p143 hypothetical protein phrog_22410 unknown function unknown function 1 92608 92790
YP_007379075.1 NC_020158_p169 hypothetical protein singleton unknown function unknown function 1 100444 100554
YP_007378923.1 NC_020158_p17 hypothetical protein singleton unknown function unknown function 1 4714 4992
YP_007378924.1 NC_020158_p18 hypothetical protein singleton unknown function unknown function 1 4989 5189
YP_007379046.1 NC_020158_p140 hypothetical protein singleton unknown function unknown function -1 91319 91537
YP_007379017.1 NC_020158_p111 hypothetical protein phrog_18178 portal protein head and packaging 1 62368 64236
YP_007379022.1 NC_020158_p116 HNH domain endonuclease phrog_33155 HNH endonuclease DNA, RNA and nucleotide metabolism -1 73018 73512
YP_007378980.1 NC_020158_p74 hypothetical protein phrog_35563 unknown function unknown function -1 36943 37077
YP_007378908.1 NC_020158_p2 hypothetical protein singleton unknown function unknown function -1 1144 1308
YP_007378979.1 NC_020158_p73 hypothetical protein singleton unknown function unknown function -1 36684 36950
YP_007378981.1 NC_020158_p75 QueD phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover -1 37077 37538
YP_007379055.1 NC_020158_p149 hypothetical protein phrog_34530 unknown function unknown function 1 95428 95619
YP_007379003.1 NC_020158_p97 thymidylate kinase phrog_761 thymidylate kinase other -1 51115 51702
YP_007379005.1 NC_020158_p99 hypothetical protein phrog_9660 unknown function unknown function -1 52161 53309
YP_007379059.1 NC_020158_p153 hypothetical protein phrog_36937 unknown function unknown function 1 96232 96612
YP_007378968.1 NC_020158_p62 HNH endonuclease phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism -1 30610 31035
YP_007379038.1 NC_020158_p132 hypothetical protein phrog_21793 unknown function unknown function 1 84241 85671
YP_007379048.1 NC_020158_p142 hypothetical protein phrog_11023 homing endonuclease with LAGLIDADG motif DNA, RNA and nucleotide metabolism -1 91889 92413
YP_007378907.1 NC_020158_p1 hypothetical protein singleton unknown function unknown function 1 541 1128
YP_007378992.1 NC_020158_p86 replication factor C large subunit phrog_11838 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism -1 42444 43697
YP_007378975.1 NC_020158_p69 GTP cyclohydrolase phrog_2197 GTP cyclohydrolase other -1 34966 35565
YP_007379062.1 NC_020158_p156 dCTP deaminase phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism -1 97295 97939
YP_007378988.1 NC_020158_p82 hypothetical protein singleton unknown function unknown function -1 40344 41261
YP_007379053.1 NC_020158_p147 hypothetical protein phrog_34761 unknown function unknown function 1 94909 95160
YP_007378915.1 NC_020158_p9 hypothetical protein singleton unknown function unknown function -1 2578 2811
YP_007379047.1 NC_020158_p141 hypothetical protein phrog_23116 unknown function unknown function -1 91527 91898
YP_007378978.1 NC_020158_p72 radical SAM family-like protein phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover -1 35902 36687
YP_007378976.1 NC_020158_p70 hypothetical protein phrog_22165 unknown function unknown function -1 35608 35784
YP_007378948.1 NC_020158_p42 hypothetical protein singleton unknown function unknown function -1 21187 21453
YP_007378959.1 NC_020158_p53 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 24346 24822
YP_007378970.1 NC_020158_p64 SprT-like protein phrog_27319 unknown function unknown function -1 31534 32250
YP_007379024.1 NC_020158_p118 prohead protease phrog_23555 head maturation protease head and packaging 1 73933 75846
YP_007379040.1 NC_020158_p134 hypothetical protein phrog_21822 unknown function unknown function 1 86500 87492
YP_007378935.1 NC_020158_p29 hypothetical protein phrog_24962 unknown function unknown function 1 13635 13781
YP_007379023.1 NC_020158_p117 hypothetical protein phrog_27094 unknown function unknown function 1 73742 73933
YP_007378985.1 NC_020158_p79 hypothetical protein phrog_35988 unknown function unknown function -1 39268 39483
YP_007378973.1 NC_020158_p67 hypothetical protein phrog_38803 unknown function unknown function -1 33599 33793
YP_007379044.1 NC_020158_p138 hypothetical protein singleton unknown function unknown function 1 90999 91139
YP_007378946.1 NC_020158_p40 hypothetical protein phrog_23905 unknown function unknown function -1 20125 20697
YP_007379025.1 NC_020158_p119 major capsid protein phrog_24667 major head protein head and packaging 1 75862 77235
YP_007379006.1 NC_020158_p100 hypothetical protein phrog_25687 unknown function unknown function -1 53324 54181
YP_007379061.1 NC_020158_p155 hypothetical protein phrog_26532 unknown function unknown function 1 97089 97298
YP_007378982.1 NC_020158_p76 QueC phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover -1 37535 38299
YP_007378920.1 NC_020158_p14 hypothetical protein singleton unknown function unknown function -1 3883 4116
YP_007378910.1 NC_020158_p4 hypothetical protein phrog_14974 unknown function unknown function -1 1676 1828
YP_007379001.1 NC_020158_p95 replication factor C small subunit phrog_168 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism -1 49881 50864
YP_007378932.1 NC_020158_p26 hypothetical protein singleton unknown function unknown function 1 11056 11646
YP_007379016.1 NC_020158_p110 HNH domain endonuclease phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61742 62368
YP_007378931.1 NC_020158_p25 hypothetical protein phrog_25575 unknown function unknown function 1 9815 10966
YP_007379066.1 NC_020158_p160 hypothetical protein singleton unknown function unknown function 1 98799 98939
YP_007379067.1 NC_020158_p161 hypothetical protein phrog_25102 unknown function unknown function 1 98936 99136
YP_007378933.1 NC_020158_p27 hypothetical protein phrog_22071 unknown function unknown function 1 11780 13096
YP_007379039.1 NC_020158_p133 hypothetical protein phrog_18987 unknown function unknown function 1 85664 86503
YP_007379010.1 NC_020158_p104 DNA repair, RadA-like protein phrog_8337 DNA repair protein DNA, RNA and nucleotide metabolism 1 57489 58400
YP_007379021.1 NC_020158_p115 hypothetical protein singleton unknown function unknown function 1 72556 73017
YP_007379051.1 NC_020158_p145 hypothetical protein phrog_24869 unknown function unknown function 1 93434 94294
YP_007379011.1 NC_020158_p105 hypothetical protein singleton unknown function unknown function -1 58397 58549
YP_007379002.1 NC_020158_p96 hypothetical protein phrog_36299 unknown function unknown function -1 50931 51113
YP_007379052.1 NC_020158_p146 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 94224 94850
YP_007378972.1 NC_020158_p66 hypothetical protein phrog_34487 unknown function unknown function -1 33231 33455
YP_007378909.1 NC_020158_p3 hypothetical protein phrog_29449 unknown function unknown function -1 1305 1595
YP_007378922.1 NC_020158_p16 hypothetical protein phrog_27877 unknown function unknown function 1 4476 4778
YP_007379036.1 NC_020158_p130 tape measure phrog_15478 tail length tape measure protein tail 1 82340 83782
YP_007379029.1 NC_020158_p123 hypothetical protein phrog_24068 unknown function unknown function 1 78405 78737
YP_007378989.1 NC_020158_p83 hypothetical protein singleton unknown function unknown function -1 41567 41644
YP_007379019.1 NC_020158_p113 head assembly singleton head assembly head and packaging 1 67378 68610
YP_007378936.1 NC_020158_p30 hypothetical protein singleton unknown function unknown function 1 13778 14062
YP_007379014.1 NC_020158_p108 HNH endonuclease phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism 1 59662 60306
YP_007379057.1 NC_020158_p151 hypothetical protein phrog_13954 unknown function unknown function 1 95785 96048
YP_007378944.1 NC_020158_p38 thymidylate synthetase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 18252 19157
YP_007379079.1 NC_020158_p173 hypothetical protein singleton unknown function unknown function 1 101578 101709
YP_007379041.1 NC_020158_p135 tail baseplate phrog_20556 baseplate protein tail 1 87506 89080
YP_007379031.1 NC_020158_p125 hypothetical protein phrog_21196 unknown function unknown function 1 79417 80028
YP_007378939.1 NC_020158_p33 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14659 15150
YP_007378998.1 NC_020158_p92 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 48580 49383
YP_007379058.1 NC_020158_p152 hypothetical protein phrog_18378 unknown function unknown function 1 96050 96235
YP_007379028.1 NC_020158_p122 hypothetical protein phrog_23144 unknown function unknown function 1 77989 78402
YP_007378950.1 NC_020158_p44 hypothetical protein singleton unknown function unknown function -1 21761 21940
YP_007378942.1 NC_020158_p36 hypothetical protein phrog_420 unknown function unknown function -1 16910 17491
YP_007378937.1 NC_020158_p31 hypothetical protein singleton unknown function unknown function 1 14059 14361
YP_007378990.1 NC_020158_p84 hypothetical protein singleton unknown function unknown function -1 41641 41796
YP_007379063.1 NC_020158_p157 hypothetical protein phrog_2470 membrane protein moron, auxiliary metabolic gene and host takeover 1 98038 98367
YP_007378916.1 NC_020158_p10 hypothetical protein singleton unknown function unknown function -1 2789 3031
YP_007378928.1 NC_020158_p22 hypothetical protein singleton unknown function unknown function 1 8969 9256
YP_007378955.1 NC_020158_p49 hypothetical protein phrog_26288 unknown function unknown function -1 22993 23253
YP_007379007.1 NC_020158_p101 hypothetical protein phrog_27403 unknown function unknown function -1 54174 54671
YP_007378991.1 NC_020158_p85 hypothetical protein phrog_31282 unknown function unknown function -1 41793 42302
YP_007379074.1 NC_020158_p168 hypothetical protein singleton unknown function unknown function 1 100247 100447
YP_007379045.1 NC_020158_p139 hypothetical protein singleton unknown function unknown function 1 91136 91273
YP_007378927.1 NC_020158_p21 ribonucleotide reductase alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 5957 8938
YP_007378987.1 NC_020158_p81 7-cyano-7-deazaguanine reductase phrog_5949 GTP cyclohydrolase other -1 39808 40269
YP_007378965.1 NC_020158_p59 hypothetical protein phrog_25479 unknown function unknown function -1 29540 29992
YP_007378951.1 NC_020158_p45 hypothetical protein singleton unknown function unknown function -1 21937 22041
YP_007378997.1 NC_020158_p91 HNH domain endonuclease phrog_8048 HNH endonuclease DNA, RNA and nucleotide metabolism -1 48280 48576
YP_007378943.1 NC_020158_p37 replication factor C small subunit phrog_29037 endonuclease DNA, RNA and nucleotide metabolism -1 17488 18213
YP_007378945.1 NC_020158_p39 hypothetical protein phrog_16678 unknown function unknown function -1 19382 20122
YP_007378952.1 NC_020158_p46 Hef nuclease phrog_24545 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22038 22724
YP_007378938.1 NC_020158_p32 hypothetical protein phrog_25632 unknown function unknown function 1 14361 14606
YP_007378940.1 NC_020158_p34 YonJ-like protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 15170 16465
YP_007378962.1 NC_020158_p56 von Willebrand factor type A phrog_23795 unknown function unknown function -1 25607 27838
YP_007378958.1 NC_020158_p52 hypothetical protein phrog_24115 unknown function unknown function -1 23957 24346
YP_007378966.1 NC_020158_p60 hypothetical protein phrog_25612 unknown function unknown function -1 29970 30392
YP_007378961.1 NC_020158_p55 hypothetical protein singleton unknown function unknown function -1 25470 25607
YP_007378986.1 NC_020158_p80 hypothetical protein phrog_31918 unknown function unknown function -1 39488 39811
YP_007378913.1 NC_020158_p7 hypothetical protein phrog_34015 unknown function unknown function -1 2320 2457
YP_007379032.1 NC_020158_p126 hypothetical protein phrog_19972 unknown function unknown function 1 80028 80498
YP_007378984.1 NC_020158_p78 hypothetical protein phrog_27747 unknown function unknown function -1 38852 39268
YP_007378925.1 NC_020158_p19 hypothetical protein phrog_19679 unknown function unknown function 1 5267 5572
YP_007378929.1 NC_020158_p23 hypothetical protein phrog_32830 unknown function unknown function 1 9259 9528
YP_007379027.1 NC_020158_p121 hypothetical protein phrog_26402 unknown function unknown function 1 77650 77982
YP_007379077.1 NC_020158_p171 hypothetical protein singleton unknown function unknown function 1 100743 100901
YP_007379068.1 NC_020158_p162 hypothetical protein phrog_29741 unknown function unknown function 1 99133 99303
YP_007379064.1 NC_020158_p158 hypothetical protein singleton unknown function unknown function 1 98364 98597
YP_007378967.1 NC_020158_p61 hypothetical protein singleton unknown function unknown function -1 30389 30613
YP_007379009.1 NC_020158_p103 hypothetical protein phrog_24900 unknown function unknown function -1 56211 57254
YP_007378964.1 NC_020158_p58 ATPase AAA phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover -1 28126 29463
YP_007379050.1 NC_020158_p144 hypothetical protein phrog_22885 Rnase H DNA, RNA and nucleotide metabolism 1 92787 93215
YP_007378957.1 NC_020158_p51 hypothetical protein phrog_22920 unknown function unknown function -1 23500 23964
YP_007378977.1 NC_020158_p71 hypothetical protein phrog_22123 unknown function unknown function -1 35777 35899
YP_007378983.1 NC_020158_p77 HNH endonuclease phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism -1 38357 38845
YP_007379030.1 NC_020158_p124 hypothetical protein phrog_17057 unknown function unknown function 1 78737 79417
YP_007378956.1 NC_020158_p50 hypothetical protein phrog_25017 unknown function unknown function -1 23246 23503
YP_007378918.1 NC_020158_p12 hypothetical protein phrog_23249 unknown function unknown function -1 3438 3698
YP_007378995.1 NC_020158_p89 hypothetical protein phrog_23962 unknown function unknown function -1 45026 45523
YP_007379026.1 NC_020158_p120 hypothetical protein phrog_26555 unknown function unknown function 1 77254 77631
YP_007378921.1 NC_020158_p15 hypothetical protein singleton unknown function unknown function -1 4176 4361
YP_007379000.1 NC_020158_p94 hypothetical protein phrog_23435 unknown function unknown function -1 49696 49884
YP_007378917.1 NC_020158_p11 hypothetical protein singleton unknown function unknown function -1 3122 3334
YP_007379037.1 NC_020158_p131 hypothetical protein phrog_20371 unknown function unknown function 1 83779 84234
YP_007378941.1 NC_020158_p35 hypothetical protein phrog_36173 unknown function unknown function -1 16525 16908
YP_007379071.1 NC_020158_p165 hypothetical protein phrog_30460 unknown function unknown function 1 99669 99860
YP_007379013.1 NC_020158_p107 hypothetical protein phrog_26615 unknown function unknown function 1 59003 59665
YP_007378996.1 NC_020158_p90 DNA polymerase phrog_262 DNA polymerase DNA, RNA and nucleotide metabolism -1 45517 48258
YP_007378994.1 NC_020158_p88 N6-adenine DNA methyltransferase phrog_56 DNA methyltransferase other -1 44172 45023
YP_007378912.1 NC_020158_p6 hypothetical protein phrog_30219 unknown function unknown function -1 2132 2323
YP_007378960.1 NC_020158_p54 hypothetical protein phrog_27711 unknown function unknown function -1 24825 25286
YP_007378969.1 NC_020158_p63 hypothetical protein phrog_26694 unknown function unknown function -1 31037 31561
YP_007379020.1 NC_020158_p114 zeta toxin phrog_24083 unknown function unknown function 1 68622 72563
YP_007379004.1 NC_020158_p98 hypothetical protein phrog_26211 unknown function unknown function -1 51706 52209
YP_007378934.1 NC_020158_p28 hypothetical protein phrog_27443 unknown function unknown function 1 13141 13638
YP_007379070.1 NC_020158_p164 hypothetical protein singleton unknown function unknown function 1 99487 99672
YP_007379076.1 NC_020158_p170 hypothetical protein singleton unknown function unknown function 1 100551 100739
YP_007378949.1 NC_020158_p43 MazG-like protein phrog_3301 pyrophosphatase other -1 21453 21764
YP_007379060.1 NC_020158_p154 hypothetical protein phrog_33428 unknown function unknown function 1 96616 97092
YP_007378999.1 NC_020158_p93 hypothetical protein phrog_26527 unknown function unknown function -1 49376 49693