| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020197 |
Definition |
Streptococcus phage TP-J34 complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
45606 |
Host Name |
Streptococcus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
38.81 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007392273.1 | NC_020197_p26 | hypothetical protein | phrog_1814 | unknown function | unknown function | 1 | 12469 | 13179 |
| YP_007392277.1 | NC_020197_p30 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 15899 | 17407 |
| YP_007392252.1 | NC_020197_p5 | cro homolog | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2602 | 2805 |
| YP_007392298.1 | NC_020197_p51 | hypothetical protein | phrog_1567 | unknown function | unknown function | 1 | 41112 | 41258 |
| YP_007392290.1 | NC_020197_p43 | tape measure protein | phrog_1204 | tail protein | tail | 1 | 23392 | 27945 |
| YP_007392279.1 | NC_020197_p32 | scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 18486 | 19067 |
| YP_007392263.1 | NC_020197_p16 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 8719 | 9180 |
| YP_007392306.1 | NC_020197_p59 | hypothetical protein | phrog_11483 | unknown function | unknown function | 1 | 44768 | 44947 |
| YP_007392251.1 | NC_020197_p4 | CI repressor homolog | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2068 | 2433 |
| YP_007392299.1 | NC_020197_p52 | hypothetical protein | phrog_1296 | holin | lysis | 1 | 41276 | 41599 |
| YP_007392286.1 | NC_020197_p39 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 21689 | 22075 |
| YP_007392255.1 | NC_020197_p8 | hypothetical protein | phrog_17359 | unknown function | unknown function | 1 | 3936 | 4199 |
| YP_007392296.1 | NC_020197_p49 | minor structural protein | phrog_372 | tail protein | tail | 1 | 38718 | 40727 |
| YP_007392307.1 | NC_020197_p60 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 45006 | 45428 |
| YP_007392260.1 | NC_020197_p13 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6615 | 7277 |
| YP_007392275.1 | NC_020197_p28 | small terminase subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 14177 | 14671 |
| YP_007392274.1 | NC_020197_p27 | transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 13615 | 14028 |
| YP_007392253.1 | NC_020197_p6 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 2858 | 3574 |
| YP_007392305.1 | NC_020197_p58 | hypothetical protein | phrog_16094 | unknown function | unknown function | 1 | 44491 | 44742 |
| YP_007392276.1 | NC_020197_p29 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 14658 | 15893 |
| YP_007392300.1 | NC_020197_p53 | holin | phrog_297 | holin | lysis | 1 | 41605 | 41847 |
| YP_007392293.1 | NC_020197_p46 | hypothetical protein | phrog_3267 | tail protein | tail | 1 | 32501 | 33622 |
| YP_007392283.1 | NC_020197_p36 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 20696 | 21037 |
| YP_007392249.1 | NC_020197_p2 | superinfection exclusion lipoprotein | phrog_4980 | superinfection exclusion | moron, auxiliary metabolic gene and host takeover | -1 | 1184 | 1612 |
| YP_007392268.1 | NC_020197_p21 | hypothetical protein | phrog_1071 | DNA methyltransferase | other | 1 | 10029 | 10670 |
| YP_007392269.1 | NC_020197_p22 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 10672 | 11217 |
| YP_007392301.1 | NC_020197_p54 | lysin | phrog_998 | endolysin | lysis | 1 | 41849 | 42694 |
| YP_007392254.1 | NC_020197_p7 | hypothetical protein | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 3595 | 3876 |
| YP_007392289.1 | NC_020197_p42 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 23085 | 23402 |
| YP_007392287.1 | NC_020197_p40 | major tail protein | phrog_238 | major tail protein | tail | 1 | 22088 | 22594 |
| YP_007392278.1 | NC_020197_p31 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 17404 | 18297 |
| YP_007392297.1 | NC_020197_p50 | hypothetical protein | phrog_1060 | unknown function | unknown function | 1 | 40691 | 41092 |
| YP_007392261.1 | NC_020197_p14 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 7279 | 8238 |
| YP_007392295.1 | NC_020197_p48 | host specificity protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 33773 | 38716 |
| YP_007392302.1 | NC_020197_p55 | hypothetical protein | phrog_6701 | unknown function | unknown function | 1 | 43035 | 43256 |
| YP_007392284.1 | NC_020197_p37 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 21034 | 21348 |
| YP_007392267.1 | NC_020197_p20 | hypothetical protein | phrog_13248 | unknown function | unknown function | 1 | 9822 | 10028 |
| YP_007392265.1 | NC_020197_p18 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 9404 | 9574 |
| YP_007392280.1 | NC_020197_p33 | hypothetical protein | phrog_909 | major head protein | head and packaging | 1 | 19087 | 19446 |
| YP_007392285.1 | NC_020197_p38 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21348 | 21692 |
| YP_007392266.1 | NC_020197_p19 | hypothetical protein | phrog_1489 | unknown function | unknown function | 1 | 9571 | 9726 |
| YP_007392281.1 | NC_020197_p34 | major head protein | phrog_29 | major head protein | head and packaging | 1 | 19465 | 20511 |
| YP_007392271.1 | NC_020197_p24 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 11701 | 12018 |
| YP_007392294.1 | NC_020197_p47 | hypothetical protein | phrog_7926 | helicase subunit of the DNA excision repair complex | DNA, RNA and nucleotide metabolism | 1 | 33622 | 33795 |
| YP_007392272.1 | NC_020197_p25 | hypothetical protein | phrog_2131 | unknown function | unknown function | 1 | 12020 | 12463 |
| YP_007392259.1 | NC_020197_p12 | hypothetical protein | phrog_3159 | unknown function | unknown function | 1 | 6308 | 6490 |
| YP_007392250.1 | NC_020197_p3 | regulator, metallo-proteinase motif | phrog_87 | metallo-protease | other | -1 | 1693 | 2061 |
| YP_007392270.1 | NC_020197_p23 | hypothetical protein | phrog_1994 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 11220 | 11732 |
| YP_007392258.1 | NC_020197_p11 | hypothetical protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 5529 | 6311 |
| YP_007392282.1 | NC_020197_p35 | hypothetical protein | phrog_5279 | unknown function | unknown function | 1 | 20523 | 20684 |
| YP_007392292.1 | NC_020197_p45 | minor tail protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 29483 | 32485 |
| YP_007392256.1 | NC_020197_p9 | hypothetical protein | phrog_1022 | unknown function | unknown function | 1 | 4217 | 4357 |
| YP_007392291.1 | NC_020197_p44 | minor tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 27945 | 29483 |
| YP_007392303.1 | NC_020197_p56 | hypothetical protein | phrog_8487 | unknown function | unknown function | 1 | 43557 | 43892 |
| YP_007392264.1 | NC_020197_p17 | hypothetical protein | phrog_1982 | unknown function | unknown function | 1 | 9177 | 9413 |
| YP_007392257.1 | NC_020197_p10 | primosome component | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 4630 | 5517 |
| YP_007392262.1 | NC_020197_p15 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8261 | 8710 |
| YP_007392304.1 | NC_020197_p57 | hypothetical protein | phrog_4964 | unknown function | unknown function | 1 | 43914 | 44465 |
| YP_007392248.1 | NC_020197_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 1 | 1080 |
| YP_007392288.1 | NC_020197_p41 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 22669 | 23022 |