Genomic map of Streptococcus phage TP-J34 (NC_020197)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020197
Definition
Streptococcus phage TP-J34 complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
45606
Host Name
Streptococcus thermophilus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
38.81
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007392273.1 NC_020197_p26 hypothetical protein phrog_1814 unknown function unknown function 1 12469 13179
YP_007392277.1 NC_020197_p30 portal protein phrog_64 portal protein head and packaging 1 15899 17407
YP_007392252.1 NC_020197_p5 cro homolog phrog_3 transcriptional repressor transcription regulation 1 2602 2805
YP_007392298.1 NC_020197_p51 hypothetical protein phrog_1567 unknown function unknown function 1 41112 41258
YP_007392290.1 NC_020197_p43 tape measure protein phrog_1204 tail protein tail 1 23392 27945
YP_007392279.1 NC_020197_p32 scaffold protein phrog_172 head scaffolding protein head and packaging 1 18486 19067
YP_007392263.1 NC_020197_p16 hypothetical protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 8719 9180
YP_007392306.1 NC_020197_p59 hypothetical protein phrog_11483 unknown function unknown function 1 44768 44947
YP_007392251.1 NC_020197_p4 CI repressor homolog phrog_8 transcriptional regulator transcription regulation -1 2068 2433
YP_007392299.1 NC_020197_p52 hypothetical protein phrog_1296 holin lysis 1 41276 41599
YP_007392286.1 NC_020197_p39 hypothetical protein phrog_176 tail terminator connector 1 21689 22075
YP_007392255.1 NC_020197_p8 hypothetical protein phrog_17359 unknown function unknown function 1 3936 4199
YP_007392296.1 NC_020197_p49 minor structural protein phrog_372 tail protein tail 1 38718 40727
YP_007392307.1 NC_020197_p60 hypothetical protein phrog_8 transcriptional regulator transcription regulation 1 45006 45428
YP_007392260.1 NC_020197_p13 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6615 7277
YP_007392275.1 NC_020197_p28 small terminase subunit phrog_51 terminase small subunit head and packaging 1 14177 14671
YP_007392274.1 NC_020197_p27 transcriptional regulator phrog_248 transcriptional activator transcription regulation 1 13615 14028
YP_007392253.1 NC_020197_p6 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 2858 3574
YP_007392305.1 NC_020197_p58 hypothetical protein phrog_16094 unknown function unknown function 1 44491 44742
YP_007392276.1 NC_020197_p29 large terminase subunit phrog_2 terminase large subunit head and packaging 1 14658 15893
YP_007392300.1 NC_020197_p53 holin phrog_297 holin lysis 1 41605 41847
YP_007392293.1 NC_020197_p46 hypothetical protein phrog_3267 tail protein tail 1 32501 33622
YP_007392283.1 NC_020197_p36 hypothetical protein phrog_132 head-tail adaptor connector 1 20696 21037
YP_007392249.1 NC_020197_p2 superinfection exclusion lipoprotein phrog_4980 superinfection exclusion moron, auxiliary metabolic gene and host takeover -1 1184 1612
YP_007392268.1 NC_020197_p21 hypothetical protein phrog_1071 DNA methyltransferase other 1 10029 10670
YP_007392269.1 NC_020197_p22 hypothetical protein phrog_121 unknown function unknown function 1 10672 11217
YP_007392301.1 NC_020197_p54 lysin phrog_998 endolysin lysis 1 41849 42694
YP_007392254.1 NC_020197_p7 hypothetical protein phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 3595 3876
YP_007392289.1 NC_020197_p42 hypothetical protein phrog_441 tail assembly chaperone tail 1 23085 23402
YP_007392287.1 NC_020197_p40 major tail protein phrog_238 major tail protein tail 1 22088 22594
YP_007392278.1 NC_020197_p31 minor head protein phrog_115 minor head protein head and packaging 1 17404 18297
YP_007392297.1 NC_020197_p50 hypothetical protein phrog_1060 unknown function unknown function 1 40691 41092
YP_007392261.1 NC_020197_p14 hypothetical protein phrog_674 unknown function unknown function 1 7279 8238
YP_007392295.1 NC_020197_p48 host specificity protein phrog_588 tail fiber protein and host specificity tail 1 33773 38716
YP_007392302.1 NC_020197_p55 hypothetical protein phrog_6701 unknown function unknown function 1 43035 43256
YP_007392284.1 NC_020197_p37 hypothetical protein phrog_348 minor head protein head and packaging 1 21034 21348
YP_007392267.1 NC_020197_p20 hypothetical protein phrog_13248 unknown function unknown function 1 9822 10028
YP_007392265.1 NC_020197_p18 hypothetical protein phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 9404 9574
YP_007392280.1 NC_020197_p33 hypothetical protein phrog_909 major head protein head and packaging 1 19087 19446
YP_007392285.1 NC_020197_p38 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 21348 21692
YP_007392266.1 NC_020197_p19 hypothetical protein phrog_1489 unknown function unknown function 1 9571 9726
YP_007392281.1 NC_020197_p34 major head protein phrog_29 major head protein head and packaging 1 19465 20511
YP_007392271.1 NC_020197_p24 hypothetical protein phrog_884 unknown function unknown function 1 11701 12018
YP_007392294.1 NC_020197_p47 hypothetical protein phrog_7926 helicase subunit of the DNA excision repair complex DNA, RNA and nucleotide metabolism 1 33622 33795
YP_007392272.1 NC_020197_p25 hypothetical protein phrog_2131 unknown function unknown function 1 12020 12463
YP_007392259.1 NC_020197_p12 hypothetical protein phrog_3159 unknown function unknown function 1 6308 6490
YP_007392250.1 NC_020197_p3 regulator, metallo-proteinase motif phrog_87 metallo-protease other -1 1693 2061
YP_007392270.1 NC_020197_p23 hypothetical protein phrog_1994 DNA binding protein DNA, RNA and nucleotide metabolism 1 11220 11732
YP_007392258.1 NC_020197_p11 hypothetical protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 5529 6311
YP_007392282.1 NC_020197_p35 hypothetical protein phrog_5279 unknown function unknown function 1 20523 20684
YP_007392292.1 NC_020197_p45 minor tail protein phrog_588 tail fiber protein and host specificity tail 1 29483 32485
YP_007392256.1 NC_020197_p9 hypothetical protein phrog_1022 unknown function unknown function 1 4217 4357
YP_007392291.1 NC_020197_p44 minor tail protein phrog_202 distal tail protein Dit tail 1 27945 29483
YP_007392303.1 NC_020197_p56 hypothetical protein phrog_8487 unknown function unknown function 1 43557 43892
YP_007392264.1 NC_020197_p17 hypothetical protein phrog_1982 unknown function unknown function 1 9177 9413
YP_007392257.1 NC_020197_p10 primosome component phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 4630 5517
YP_007392262.1 NC_020197_p15 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8261 8710
YP_007392304.1 NC_020197_p57 hypothetical protein phrog_4964 unknown function unknown function 1 43914 44465
YP_007392248.1 NC_020197_p1 integrase phrog_1 integrase integration and excision -1 1 1080
YP_007392288.1 NC_020197_p41 hypothetical protein phrog_183 tail chaperone protein tail 1 22669 23022