Genomic map of Pseudomonas phage JBD30 (NC_020198)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020198
Definition
Pseudomonas phage JBD30, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus.
DB of origin
REFSEQ
Length
36947
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
64.27
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007392330.1 NC_020198_p23 protein of an unannotated phage phrog_1024 unknown function unknown function 1 11045 11467
YP_007392309.1 NC_020198_p2 protein of an unannotated phage phrog_769 transcriptional repressor transcription regulation 1 1071 1427
YP_007392323.1 NC_020198_p16 protein of an unannotated phage phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 8634 8915
YP_007392361.1 NC_020198_p54 protein of an unannotated phage phrog_2875 virion structural protein head and packaging 1 35124 36272
YP_007392322.1 NC_020198_p15 protein of an unannotated phage phrog_4367 unknown function unknown function 1 8323 8631
YP_007392349.1 NC_020198_p42 protein of an unannotated phage phrog_209 portal protein head and packaging 1 22508 22981
YP_007392360.1 NC_020198_p53 protein of an unannotated phage phrog_1101 tail protein tail 1 32920 35127
YP_007392324.1 NC_020198_p17 protein of an unannotated phage phrog_3223 unknown function unknown function 1 8917 9123
YP_007392340.1 NC_020198_p33 protein of an unannotated phage phrog_220 minor head protein and DNA pilot head and packaging 1 16981 18267
YP_007392315.1 NC_020198_p8 protein of an unannotated phage phrog_2030 transcriptional regulator transcription regulation 1 5423 6088
YP_007392362.1 NC_020198_p55 protein of an unannotated phage phrog_2432 unknown function unknown function 1 36269 36556
YP_007392319.1 NC_020198_p12 protein of an unannotated phage phrog_2043 unknown function unknown function 1 7290 7583
YP_007392325.1 NC_020198_p18 protein of an unannotated phage phrog_3652 unknown function unknown function 1 9126 9395
YP_007392344.1 NC_020198_p37 protein of an unannotated phage phrog_328 head maturation protease head and packaging 1 19508 20605
YP_007392310.1 NC_020198_p3 protein of an unannotated phage phrog_2345 transcriptional regulator transcription regulation 1 1430 1864
YP_007392316.1 NC_020198_p9 protein of an unannotated phage phrog_3190 unknown function unknown function 1 6160 6795
YP_007392363.1 NC_020198_p56 protein of an unannotated phage phrog_2623 unknown function unknown function 1 36635 36859
YP_007392317.1 NC_020198_p10 protein of an unannotated phage phrog_3765 unknown function unknown function 1 6780 6896
YP_007392357.1 NC_020198_p50 protein of an unannotated phage phrog_778 tail assembly protein tail 1 31656 32477
YP_007392320.1 NC_020198_p13 protein of an unannotated phage phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 7600 8118
YP_007392359.1 NC_020198_p52 protein of an unannotated phage phrog_1196 tail assembly chaperone tail 1 32712 32930
YP_007392350.1 NC_020198_p43 protein of an unannotated phage phrog_3129 unknown function unknown function 1 22969 23148
YP_007392326.1 NC_020198_p19 protein of an unannotated phage phrog_4093 unknown function unknown function 1 9466 9762
YP_007392345.1 NC_020198_p38 protein of an unannotated phage phrog_371 major head protein head and packaging 1 20609 21523
YP_007392336.1 NC_020198_p29 protein of an unannotated phage phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 12707 13207
YP_007392339.1 NC_020198_p32 protein of an unannotated phage phrog_113 portal protein head and packaging 1 15401 16981
YP_007392308.1 NC_020198_p1 protein of an unannotated phage phrog_4 transcriptional repressor transcription regulation -1 171 830
YP_007392348.1 NC_020198_p41 protein of an unannotated phage phrog_195 head-tail adaptor connector 1 22095 22511
YP_007392333.1 NC_020198_p26 protein of an unannotated phage phrog_2975 Rz-like spanin lysis 1 11999 12400
YP_007392338.1 NC_020198_p31 protein of an unannotated phage phrog_38 terminase large subunit head and packaging 1 13739 15391
YP_007392314.1 NC_020198_p7 protein of an unannotated phage phrog_296 DNA transposition protein integration and excision 1 4674 5426
YP_007392355.1 NC_020198_p48 protein of an unannotated phage phrog_687 structural protein head and packaging 1 29040 29963
YP_007392334.1 NC_020198_p27 protein of an unannotated phage phrog_8661 unknown function unknown function 1 12393 12506
YP_007392331.1 NC_020198_p24 protein of an unannotated phage phrog_873 endolysin head and packaging 1 11467 11883
YP_007392341.1 NC_020198_p34 protein of an unannotated phage phrog_26 tail completion or Neck1 protein connector 1 18267 18734
YP_007392353.1 NC_020198_p46 protein of an unannotated phage phrog_2335 tail length tape measure protein tail 1 24598 28074
YP_007392343.1 NC_020198_p36 protein of an unannotated phage phrog_3865 unknown function unknown function 1 19053 19292
YP_007392329.1 NC_020198_p22 protein of an unannotated phage phrog_3648 unknown function unknown function 1 10705 11052
YP_007392358.1 NC_020198_p51 protein of an unannotated phage phrog_1180 tail assembly chaperone tail 1 32485 32715
YP_007392313.1 NC_020198_p6 protein of an unannotated phage phrog_310 transposase integration and excision 1 2590 4659
YP_007392328.1 NC_020198_p21 protein of an unannotated phage phrog_836 late transcriptional activator transcription regulation 1 10153 10602
YP_007392346.1 NC_020198_p39 protein of an unannotated phage phrog_4833 unknown function unknown function 1 21590 21931
YP_007392337.1 NC_020198_p30 protein of an unannotated phage phrog_1244 unknown function unknown function -1 13213 13707
YP_007392352.1 NC_020198_p45 protein of an unannotated phage phrog_1442 tail assembly chaperone tail 1 23955 24449
YP_007392311.1 NC_020198_p4 protein of an unannotated phage phrog_8647 unknown function unknown function 1 1864 2190
YP_007392342.1 NC_020198_p35 protein of an unannotated phage phrog_20331 unknown function unknown function 1 18845 19081
YP_007392356.1 NC_020198_p49 protein of an unannotated phage phrog_1082 tail assembly protein tail 1 29963 31666
YP_007392351.1 NC_020198_p44 protein of an unannotated phage phrog_807 major tail protein with Ig-like domain tail 1 23181 23951
YP_007392354.1 NC_020198_p47 protein of an unannotated phage phrog_687 structural protein head and packaging 1 28082 29038
YP_007392335.1 NC_020198_p28 protein of an unannotated phage phrog_1103 unknown function unknown function 1 12511 12699
YP_007392332.1 NC_020198_p25 protein of an unannotated phage phrog_36351 unknown function unknown function 1 11883 12002
YP_007392327.1 NC_020198_p20 protein of an unannotated phage phrog_286 unknown function unknown function 1 9759 10166
YP_007392312.1 NC_020198_p5 protein of an unannotated phage phrog_4468 unknown function unknown function 1 2343 2597
YP_007392318.1 NC_020198_p11 protein of an unannotated phage phrog_2119 unknown function unknown function 1 6896 7309
YP_007392321.1 NC_020198_p14 protein of an unannotated phage phrog_10427 unknown function unknown function 1 8118 8321
YP_007392347.1 NC_020198_p40 protein of an unannotated phage phrog_3376 unknown function unknown function 1 21931 22098