| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020198 |
Definition |
Pseudomonas phage JBD30, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
36947 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
64.27 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007392330.1 | NC_020198_p23 | protein of an unannotated phage | phrog_1024 | unknown function | unknown function | 1 | 11045 | 11467 |
| YP_007392309.1 | NC_020198_p2 | protein of an unannotated phage | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1071 | 1427 |
| YP_007392323.1 | NC_020198_p16 | protein of an unannotated phage | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 8634 | 8915 |
| YP_007392361.1 | NC_020198_p54 | protein of an unannotated phage | phrog_2875 | virion structural protein | head and packaging | 1 | 35124 | 36272 |
| YP_007392322.1 | NC_020198_p15 | protein of an unannotated phage | phrog_4367 | unknown function | unknown function | 1 | 8323 | 8631 |
| YP_007392349.1 | NC_020198_p42 | protein of an unannotated phage | phrog_209 | portal protein | head and packaging | 1 | 22508 | 22981 |
| YP_007392360.1 | NC_020198_p53 | protein of an unannotated phage | phrog_1101 | tail protein | tail | 1 | 32920 | 35127 |
| YP_007392324.1 | NC_020198_p17 | protein of an unannotated phage | phrog_3223 | unknown function | unknown function | 1 | 8917 | 9123 |
| YP_007392340.1 | NC_020198_p33 | protein of an unannotated phage | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 16981 | 18267 |
| YP_007392315.1 | NC_020198_p8 | protein of an unannotated phage | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 5423 | 6088 |
| YP_007392362.1 | NC_020198_p55 | protein of an unannotated phage | phrog_2432 | unknown function | unknown function | 1 | 36269 | 36556 |
| YP_007392319.1 | NC_020198_p12 | protein of an unannotated phage | phrog_2043 | unknown function | unknown function | 1 | 7290 | 7583 |
| YP_007392325.1 | NC_020198_p18 | protein of an unannotated phage | phrog_3652 | unknown function | unknown function | 1 | 9126 | 9395 |
| YP_007392344.1 | NC_020198_p37 | protein of an unannotated phage | phrog_328 | head maturation protease | head and packaging | 1 | 19508 | 20605 |
| YP_007392310.1 | NC_020198_p3 | protein of an unannotated phage | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1430 | 1864 |
| YP_007392316.1 | NC_020198_p9 | protein of an unannotated phage | phrog_3190 | unknown function | unknown function | 1 | 6160 | 6795 |
| YP_007392363.1 | NC_020198_p56 | protein of an unannotated phage | phrog_2623 | unknown function | unknown function | 1 | 36635 | 36859 |
| YP_007392317.1 | NC_020198_p10 | protein of an unannotated phage | phrog_3765 | unknown function | unknown function | 1 | 6780 | 6896 |
| YP_007392357.1 | NC_020198_p50 | protein of an unannotated phage | phrog_778 | tail assembly protein | tail | 1 | 31656 | 32477 |
| YP_007392320.1 | NC_020198_p13 | protein of an unannotated phage | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7600 | 8118 |
| YP_007392359.1 | NC_020198_p52 | protein of an unannotated phage | phrog_1196 | tail assembly chaperone | tail | 1 | 32712 | 32930 |
| YP_007392350.1 | NC_020198_p43 | protein of an unannotated phage | phrog_3129 | unknown function | unknown function | 1 | 22969 | 23148 |
| YP_007392326.1 | NC_020198_p19 | protein of an unannotated phage | phrog_4093 | unknown function | unknown function | 1 | 9466 | 9762 |
| YP_007392345.1 | NC_020198_p38 | protein of an unannotated phage | phrog_371 | major head protein | head and packaging | 1 | 20609 | 21523 |
| YP_007392336.1 | NC_020198_p29 | protein of an unannotated phage | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12707 | 13207 |
| YP_007392339.1 | NC_020198_p32 | protein of an unannotated phage | phrog_113 | portal protein | head and packaging | 1 | 15401 | 16981 |
| YP_007392308.1 | NC_020198_p1 | protein of an unannotated phage | phrog_4 | transcriptional repressor | transcription regulation | -1 | 171 | 830 |
| YP_007392348.1 | NC_020198_p41 | protein of an unannotated phage | phrog_195 | head-tail adaptor | connector | 1 | 22095 | 22511 |
| YP_007392333.1 | NC_020198_p26 | protein of an unannotated phage | phrog_2975 | Rz-like spanin | lysis | 1 | 11999 | 12400 |
| YP_007392338.1 | NC_020198_p31 | protein of an unannotated phage | phrog_38 | terminase large subunit | head and packaging | 1 | 13739 | 15391 |
| YP_007392314.1 | NC_020198_p7 | protein of an unannotated phage | phrog_296 | DNA transposition protein | integration and excision | 1 | 4674 | 5426 |
| YP_007392355.1 | NC_020198_p48 | protein of an unannotated phage | phrog_687 | structural protein | head and packaging | 1 | 29040 | 29963 |
| YP_007392334.1 | NC_020198_p27 | protein of an unannotated phage | phrog_8661 | unknown function | unknown function | 1 | 12393 | 12506 |
| YP_007392331.1 | NC_020198_p24 | protein of an unannotated phage | phrog_873 | endolysin | head and packaging | 1 | 11467 | 11883 |
| YP_007392341.1 | NC_020198_p34 | protein of an unannotated phage | phrog_26 | tail completion or Neck1 protein | connector | 1 | 18267 | 18734 |
| YP_007392353.1 | NC_020198_p46 | protein of an unannotated phage | phrog_2335 | tail length tape measure protein | tail | 1 | 24598 | 28074 |
| YP_007392343.1 | NC_020198_p36 | protein of an unannotated phage | phrog_3865 | unknown function | unknown function | 1 | 19053 | 19292 |
| YP_007392329.1 | NC_020198_p22 | protein of an unannotated phage | phrog_3648 | unknown function | unknown function | 1 | 10705 | 11052 |
| YP_007392358.1 | NC_020198_p51 | protein of an unannotated phage | phrog_1180 | tail assembly chaperone | tail | 1 | 32485 | 32715 |
| YP_007392313.1 | NC_020198_p6 | protein of an unannotated phage | phrog_310 | transposase | integration and excision | 1 | 2590 | 4659 |
| YP_007392328.1 | NC_020198_p21 | protein of an unannotated phage | phrog_836 | late transcriptional activator | transcription regulation | 1 | 10153 | 10602 |
| YP_007392346.1 | NC_020198_p39 | protein of an unannotated phage | phrog_4833 | unknown function | unknown function | 1 | 21590 | 21931 |
| YP_007392337.1 | NC_020198_p30 | protein of an unannotated phage | phrog_1244 | unknown function | unknown function | -1 | 13213 | 13707 |
| YP_007392352.1 | NC_020198_p45 | protein of an unannotated phage | phrog_1442 | tail assembly chaperone | tail | 1 | 23955 | 24449 |
| YP_007392311.1 | NC_020198_p4 | protein of an unannotated phage | phrog_8647 | unknown function | unknown function | 1 | 1864 | 2190 |
| YP_007392342.1 | NC_020198_p35 | protein of an unannotated phage | phrog_20331 | unknown function | unknown function | 1 | 18845 | 19081 |
| YP_007392356.1 | NC_020198_p49 | protein of an unannotated phage | phrog_1082 | tail assembly protein | tail | 1 | 29963 | 31666 |
| YP_007392351.1 | NC_020198_p44 | protein of an unannotated phage | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 23181 | 23951 |
| YP_007392354.1 | NC_020198_p47 | protein of an unannotated phage | phrog_687 | structural protein | head and packaging | 1 | 28082 | 29038 |
| YP_007392335.1 | NC_020198_p28 | protein of an unannotated phage | phrog_1103 | unknown function | unknown function | 1 | 12511 | 12699 |
| YP_007392332.1 | NC_020198_p25 | protein of an unannotated phage | phrog_36351 | unknown function | unknown function | 1 | 11883 | 12002 |
| YP_007392327.1 | NC_020198_p20 | protein of an unannotated phage | phrog_286 | unknown function | unknown function | 1 | 9759 | 10166 |
| YP_007392312.1 | NC_020198_p5 | protein of an unannotated phage | phrog_4468 | unknown function | unknown function | 1 | 2343 | 2597 |
| YP_007392318.1 | NC_020198_p11 | protein of an unannotated phage | phrog_2119 | unknown function | unknown function | 1 | 6896 | 7309 |
| YP_007392321.1 | NC_020198_p14 | protein of an unannotated phage | phrog_10427 | unknown function | unknown function | 1 | 8118 | 8321 |
| YP_007392347.1 | NC_020198_p40 | protein of an unannotated phage | phrog_3376 | unknown function | unknown function | 1 | 21931 | 22098 |