| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020200 |
Definition |
Pseudomonas phage JBD88a, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
36429 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
63.98 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007392414.1 | NC_020200_p7 | protein of an unannotated phage | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 4882 | 5529 |
| YP_007392408.1 | NC_020200_p1 | protein of an unannotated phage | phrog_4 | transcriptional repressor | transcription regulation | -1 | 171 | 884 |
| YP_007392424.1 | NC_020200_p17 | protein of an unannotated phage | phrog_4093 | unknown function | unknown function | 1 | 8376 | 8672 |
| YP_007392451.1 | NC_020200_p44 | protein of an unannotated phage | phrog_1442 | tail assembly chaperone | tail | 1 | 23303 | 23710 |
| YP_007392438.1 | NC_020200_p31 | protein of an unannotated phage | phrog_26 | tail completion or Neck1 protein | connector | 1 | 16890 | 17357 |
| YP_007392430.1 | NC_020200_p23 | protein of an unannotated phage | phrog_4057 | unknown function | unknown function | 1 | 10794 | 11036 |
| YP_007392442.1 | NC_020200_p35 | protein of an unannotated phage | phrog_10291 | unknown function | unknown function | -1 | 18517 | 18642 |
| YP_007392425.1 | NC_020200_p18 | protein of an unannotated phage | phrog_286 | unknown function | unknown function | 1 | 8669 | 9070 |
| YP_007392458.1 | NC_020200_p51 | protein of an unannotated phage | phrog_1196 | tail assembly chaperone | tail | 1 | 32188 | 32406 |
| YP_007392452.1 | NC_020200_p45 | protein of an unannotated phage | phrog_2335 | tail length tape measure protein | tail | 1 | 24895 | 27540 |
| YP_007392413.1 | NC_020200_p6 | protein of an unannotated phage | phrog_296 | DNA transposition protein | integration and excision | 1 | 4133 | 4885 |
| YP_007392448.1 | NC_020200_p41 | protein of an unannotated phage | phrog_209 | portal protein | head and packaging | 1 | 21764 | 22237 |
| YP_007392420.1 | NC_020200_p13 | protein of an unannotated phage | phrog_4367 | unknown function | unknown function | 1 | 7233 | 7541 |
| YP_007392455.1 | NC_020200_p48 | protein of an unannotated phage | phrog_1082 | tail assembly protein | tail | 1 | 29429 | 31132 |
| YP_007392427.1 | NC_020200_p20 | protein of an unannotated phage | phrog_3648 | unknown function | unknown function | 1 | 9616 | 9963 |
| YP_007392436.1 | NC_020200_p29 | protein of an unannotated phage | phrog_113 | portal protein | head and packaging | 1 | 14024 | 15604 |
| YP_007392416.1 | NC_020200_p9 | protein of an unannotated phage | phrog_2119 | unknown function | unknown function | 1 | 5624 | 6043 |
| YP_007392440.1 | NC_020200_p33 | protein of an unannotated phage | phrog_9439 | unknown function | unknown function | 1 | 17781 | 18203 |
| YP_007392423.1 | NC_020200_p16 | protein of an unannotated phage | phrog_3652 | unknown function | unknown function | 1 | 8036 | 8305 |
| YP_007392437.1 | NC_020200_p30 | protein of an unannotated phage | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 15604 | 16890 |
| YP_007392453.1 | NC_020200_p46 | protein of an unannotated phage | phrog_687 | structural protein | head and packaging | 1 | 27548 | 28504 |
| YP_007392422.1 | NC_020200_p15 | protein of an unannotated phage | phrog_3223 | unknown function | unknown function | 1 | 7827 | 8033 |
| YP_007392417.1 | NC_020200_p10 | protein of an unannotated phage | phrog_2043 | unknown function | unknown function | 1 | 6018 | 6317 |
| YP_007392441.1 | NC_020200_p34 | protein of an unannotated phage | phrog_3865 | unknown function | unknown function | 1 | 18197 | 18421 |
| YP_007392426.1 | NC_020200_p19 | protein of an unannotated phage | phrog_836 | late transcriptional activator | transcription regulation | 1 | 9102 | 9512 |
| YP_007392454.1 | NC_020200_p47 | protein of an unannotated phage | phrog_687 | structural protein | head and packaging | 1 | 28506 | 29429 |
| YP_007392459.1 | NC_020200_p52 | protein of an unannotated phage | phrog_1101 | tail protein | tail | 1 | 32396 | 34603 |
| YP_007392412.1 | NC_020200_p5 | protein of an unannotated phage | phrog_310 | transposase | integration and excision | 1 | 2124 | 4118 |
| YP_007392428.1 | NC_020200_p21 | protein of an unannotated phage | phrog_1024 | unknown function | unknown function | 1 | 9956 | 10378 |
| YP_007392461.1 | NC_020200_p54 | protein of an unannotated phage | phrog_2432 | unknown function | unknown function | 1 | 35748 | 36038 |
| YP_007392456.1 | NC_020200_p49 | protein of an unannotated phage | phrog_778 | tail assembly protein | tail | 1 | 31122 | 31943 |
| YP_007392409.1 | NC_020200_p2 | protein of an unannotated phage | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1054 | 1410 |
| YP_007392410.1 | NC_020200_p3 | protein of an unannotated phage | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1413 | 1847 |
| YP_007392421.1 | NC_020200_p14 | protein of an unannotated phage | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 7544 | 7825 |
| YP_007392462.1 | NC_020200_p55 | protein of an unannotated phage | phrog_2623 | unknown function | unknown function | 1 | 36116 | 36340 |
| YP_007392419.1 | NC_020200_p12 | protein of an unannotated phage | phrog_6755 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6854 | 7231 |
| YP_007392457.1 | NC_020200_p50 | protein of an unannotated phage | phrog_1180 | tail assembly chaperone | tail | 1 | 31952 | 32191 |
| YP_007392418.1 | NC_020200_p11 | protein of an unannotated phage | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6334 | 6852 |
| YP_007392411.1 | NC_020200_p4 | protein of an unannotated phage | phrog_4468 | unknown function | unknown function | 1 | 1847 | 2056 |
| YP_007392429.1 | NC_020200_p22 | protein of an unannotated phage | phrog_873 | endolysin | head and packaging | 1 | 10378 | 10794 |
| YP_007392444.1 | NC_020200_p37 | protein of an unannotated phage | phrog_371 | major head protein | head and packaging | 1 | 19766 | 20680 |
| YP_007392445.1 | NC_020200_p38 | protein of an unannotated phage | phrog_4833 | unknown function | unknown function | 1 | 20747 | 21187 |
| YP_007392460.1 | NC_020200_p53 | protein of an unannotated phage | phrog_2875 | virion structural protein | head and packaging | 1 | 34600 | 35751 |
| YP_007392447.1 | NC_020200_p40 | protein of an unannotated phage | phrog_195 | head-tail adaptor | connector | 1 | 21351 | 21767 |
| YP_007392443.1 | NC_020200_p36 | protein of an unannotated phage | phrog_328 | head maturation protease | head and packaging | 1 | 19193 | 19762 |
| YP_007392415.1 | NC_020200_p8 | protein of an unannotated phage | phrog_3765 | unknown function | unknown function | 1 | 5514 | 5630 |
| YP_007392449.1 | NC_020200_p42 | protein of an unannotated phage | phrog_3129 | unknown function | unknown function | 1 | 22225 | 22410 |
| YP_007392435.1 | NC_020200_p28 | protein of an unannotated phage | phrog_38 | terminase large subunit | head and packaging | 1 | 12239 | 14014 |
| YP_007392439.1 | NC_020200_p32 | protein of an unannotated phage | phrog_20563 | unknown function | unknown function | 1 | 17470 | 17724 |
| YP_007392431.1 | NC_020200_p24 | protein of an unannotated phage | phrog_2975 | Rz-like spanin | lysis | 1 | 11033 | 11434 |
| YP_007392433.1 | NC_020200_p26 | protein of an unannotated phage | phrog_1103 | unknown function | unknown function | 1 | 11545 | 11733 |
| YP_007392434.1 | NC_020200_p27 | protein of an unannotated phage | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 11742 | 12242 |
| YP_007392450.1 | NC_020200_p43 | protein of an unannotated phage | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 22436 | 23209 |
| YP_007392446.1 | NC_020200_p39 | protein of an unannotated phage | phrog_3376 | unknown function | unknown function | 1 | 21187 | 21354 |
| YP_007392432.1 | NC_020200_p25 | protein of an unannotated phage | phrog_8661 | unknown function | unknown function | 1 | 11427 | 11540 |