Genomic map of Pseudomonas phage JBD88a (NC_020200)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020200
Definition
Pseudomonas phage JBD88a, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus.
DB of origin
REFSEQ
Length
36429
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
63.98
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007392414.1 NC_020200_p7 protein of an unannotated phage phrog_2030 transcriptional regulator transcription regulation 1 4882 5529
YP_007392408.1 NC_020200_p1 protein of an unannotated phage phrog_4 transcriptional repressor transcription regulation -1 171 884
YP_007392424.1 NC_020200_p17 protein of an unannotated phage phrog_4093 unknown function unknown function 1 8376 8672
YP_007392451.1 NC_020200_p44 protein of an unannotated phage phrog_1442 tail assembly chaperone tail 1 23303 23710
YP_007392438.1 NC_020200_p31 protein of an unannotated phage phrog_26 tail completion or Neck1 protein connector 1 16890 17357
YP_007392430.1 NC_020200_p23 protein of an unannotated phage phrog_4057 unknown function unknown function 1 10794 11036
YP_007392442.1 NC_020200_p35 protein of an unannotated phage phrog_10291 unknown function unknown function -1 18517 18642
YP_007392425.1 NC_020200_p18 protein of an unannotated phage phrog_286 unknown function unknown function 1 8669 9070
YP_007392458.1 NC_020200_p51 protein of an unannotated phage phrog_1196 tail assembly chaperone tail 1 32188 32406
YP_007392452.1 NC_020200_p45 protein of an unannotated phage phrog_2335 tail length tape measure protein tail 1 24895 27540
YP_007392413.1 NC_020200_p6 protein of an unannotated phage phrog_296 DNA transposition protein integration and excision 1 4133 4885
YP_007392448.1 NC_020200_p41 protein of an unannotated phage phrog_209 portal protein head and packaging 1 21764 22237
YP_007392420.1 NC_020200_p13 protein of an unannotated phage phrog_4367 unknown function unknown function 1 7233 7541
YP_007392455.1 NC_020200_p48 protein of an unannotated phage phrog_1082 tail assembly protein tail 1 29429 31132
YP_007392427.1 NC_020200_p20 protein of an unannotated phage phrog_3648 unknown function unknown function 1 9616 9963
YP_007392436.1 NC_020200_p29 protein of an unannotated phage phrog_113 portal protein head and packaging 1 14024 15604
YP_007392416.1 NC_020200_p9 protein of an unannotated phage phrog_2119 unknown function unknown function 1 5624 6043
YP_007392440.1 NC_020200_p33 protein of an unannotated phage phrog_9439 unknown function unknown function 1 17781 18203
YP_007392423.1 NC_020200_p16 protein of an unannotated phage phrog_3652 unknown function unknown function 1 8036 8305
YP_007392437.1 NC_020200_p30 protein of an unannotated phage phrog_220 minor head protein and DNA pilot head and packaging 1 15604 16890
YP_007392453.1 NC_020200_p46 protein of an unannotated phage phrog_687 structural protein head and packaging 1 27548 28504
YP_007392422.1 NC_020200_p15 protein of an unannotated phage phrog_3223 unknown function unknown function 1 7827 8033
YP_007392417.1 NC_020200_p10 protein of an unannotated phage phrog_2043 unknown function unknown function 1 6018 6317
YP_007392441.1 NC_020200_p34 protein of an unannotated phage phrog_3865 unknown function unknown function 1 18197 18421
YP_007392426.1 NC_020200_p19 protein of an unannotated phage phrog_836 late transcriptional activator transcription regulation 1 9102 9512
YP_007392454.1 NC_020200_p47 protein of an unannotated phage phrog_687 structural protein head and packaging 1 28506 29429
YP_007392459.1 NC_020200_p52 protein of an unannotated phage phrog_1101 tail protein tail 1 32396 34603
YP_007392412.1 NC_020200_p5 protein of an unannotated phage phrog_310 transposase integration and excision 1 2124 4118
YP_007392428.1 NC_020200_p21 protein of an unannotated phage phrog_1024 unknown function unknown function 1 9956 10378
YP_007392461.1 NC_020200_p54 protein of an unannotated phage phrog_2432 unknown function unknown function 1 35748 36038
YP_007392456.1 NC_020200_p49 protein of an unannotated phage phrog_778 tail assembly protein tail 1 31122 31943
YP_007392409.1 NC_020200_p2 protein of an unannotated phage phrog_769 transcriptional repressor transcription regulation 1 1054 1410
YP_007392410.1 NC_020200_p3 protein of an unannotated phage phrog_2345 transcriptional regulator transcription regulation 1 1413 1847
YP_007392421.1 NC_020200_p14 protein of an unannotated phage phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 7544 7825
YP_007392462.1 NC_020200_p55 protein of an unannotated phage phrog_2623 unknown function unknown function 1 36116 36340
YP_007392419.1 NC_020200_p12 protein of an unannotated phage phrog_6755 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6854 7231
YP_007392457.1 NC_020200_p50 protein of an unannotated phage phrog_1180 tail assembly chaperone tail 1 31952 32191
YP_007392418.1 NC_020200_p11 protein of an unannotated phage phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6334 6852
YP_007392411.1 NC_020200_p4 protein of an unannotated phage phrog_4468 unknown function unknown function 1 1847 2056
YP_007392429.1 NC_020200_p22 protein of an unannotated phage phrog_873 endolysin head and packaging 1 10378 10794
YP_007392444.1 NC_020200_p37 protein of an unannotated phage phrog_371 major head protein head and packaging 1 19766 20680
YP_007392445.1 NC_020200_p38 protein of an unannotated phage phrog_4833 unknown function unknown function 1 20747 21187
YP_007392460.1 NC_020200_p53 protein of an unannotated phage phrog_2875 virion structural protein head and packaging 1 34600 35751
YP_007392447.1 NC_020200_p40 protein of an unannotated phage phrog_195 head-tail adaptor connector 1 21351 21767
YP_007392443.1 NC_020200_p36 protein of an unannotated phage phrog_328 head maturation protease head and packaging 1 19193 19762
YP_007392415.1 NC_020200_p8 protein of an unannotated phage phrog_3765 unknown function unknown function 1 5514 5630
YP_007392449.1 NC_020200_p42 protein of an unannotated phage phrog_3129 unknown function unknown function 1 22225 22410
YP_007392435.1 NC_020200_p28 protein of an unannotated phage phrog_38 terminase large subunit head and packaging 1 12239 14014
YP_007392439.1 NC_020200_p32 protein of an unannotated phage phrog_20563 unknown function unknown function 1 17470 17724
YP_007392431.1 NC_020200_p24 protein of an unannotated phage phrog_2975 Rz-like spanin lysis 1 11033 11434
YP_007392433.1 NC_020200_p26 protein of an unannotated phage phrog_1103 unknown function unknown function 1 11545 11733
YP_007392434.1 NC_020200_p27 protein of an unannotated phage phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 11742 12242
YP_007392450.1 NC_020200_p43 protein of an unannotated phage phrog_807 major tail protein with Ig-like domain tail 1 22436 23209
YP_007392446.1 NC_020200_p39 protein of an unannotated phage phrog_3376 unknown function unknown function 1 21187 21354
YP_007392432.1 NC_020200_p25 protein of an unannotated phage phrog_8661 unknown function unknown function 1 11427 11540