| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020202 |
Definition |
Pseudomonas phage JBD5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
37740 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
64.26 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007392739.1 | NC_020202_p35 | protein of an unannotated phage | phrog_9439 | unknown function | unknown function | 1 | 18721 | 19140 |
| YP_007392722.1 | NC_020202_p18 | protein of an unannotated phage | phrog_3652 | unknown function | unknown function | 1 | 8955 | 9224 |
| YP_007392763.1 | NC_020202_p59 | protein of an unannotated phage | phrog_2623 | unknown function | unknown function | 1 | 37446 | 37646 |
| YP_007392721.1 | NC_020202_p17 | protein of an unannotated phage | phrog_3223 | unknown function | unknown function | 1 | 8746 | 8952 |
| YP_007392727.1 | NC_020202_p23 | protein of an unannotated phage | phrog_1024 | unknown function | unknown function | 1 | 10874 | 11296 |
| YP_007392732.1 | NC_020202_p28 | protein of an unannotated phage | phrog_1103 | unknown function | unknown function | 1 | 12463 | 12651 |
| YP_007392757.1 | NC_020202_p53 | protein of an unannotated phage | phrog_778 | tail assembly protein | tail | 1 | 32435 | 33256 |
| YP_007392724.1 | NC_020202_p20 | protein of an unannotated phage | phrog_286 | unknown function | unknown function | 1 | 9588 | 9989 |
| YP_007392719.1 | NC_020202_p15 | protein of an unannotated phage | phrog_7895 | unknown function | unknown function | 1 | 8240 | 8461 |
| YP_007392705.1 | NC_020202_p1 | protein of an unannotated phage | phrog_4 | transcriptional repressor | transcription regulation | -1 | 173 | 886 |
| YP_007392751.1 | NC_020202_p47 | protein of an unannotated phage | phrog_1442 | tail assembly chaperone | tail | 1 | 24680 | 25165 |
| YP_007392741.1 | NC_020202_p37 | protein of an unannotated phage | phrog_3865 | unknown function | unknown function | 1 | 19373 | 19594 |
| YP_007392711.1 | NC_020202_p7 | protein of an unannotated phage | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 4884 | 5549 |
| YP_007392714.1 | NC_020202_p10 | protein of an unannotated phage | phrog_2119 | unknown function | unknown function | 1 | 6357 | 6770 |
| YP_007392726.1 | NC_020202_p22 | protein of an unannotated phage | phrog_3648 | unknown function | unknown function | 1 | 10534 | 10881 |
| YP_007392750.1 | NC_020202_p46 | protein of an unannotated phage | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 23906 | 24676 |
| YP_007392740.1 | NC_020202_p36 | protein of an unannotated phage | phrog_26475 | unknown function | unknown function | 1 | 19137 | 19376 |
| YP_007392729.1 | NC_020202_p25 | protein of an unannotated phage | phrog_4057 | unknown function | unknown function | 1 | 11712 | 11954 |
| YP_007392754.1 | NC_020202_p50 | protein of an unannotated phage | phrog_687 | structural protein | head and packaging | 1 | 28861 | 29817 |
| YP_007392745.1 | NC_020202_p41 | protein of an unannotated phage | phrog_7976 | unknown function | unknown function | 1 | 22276 | 22578 |
| YP_007392735.1 | NC_020202_p31 | protein of an unannotated phage | phrog_113 | portal protein | head and packaging | 1 | 14944 | 16530 |
| YP_007392746.1 | NC_020202_p42 | protein of an unannotated phage | phrog_3376 | unknown function | unknown function | 1 | 22641 | 22817 |
| YP_007392761.1 | NC_020202_p57 | protein of an unannotated phage | phrog_2875 | virion structural protein | head and packaging | 1 | 35913 | 37064 |
| YP_007392731.1 | NC_020202_p27 | protein of an unannotated phage | phrog_8661 | unknown function | unknown function | 1 | 12345 | 12458 |
| YP_007392728.1 | NC_020202_p24 | protein of an unannotated phage | phrog_873 | endolysin | head and packaging | 1 | 11296 | 11712 |
| YP_007392734.1 | NC_020202_p30 | protein of an unannotated phage | phrog_38 | terminase large subunit | head and packaging | 1 | 13157 | 14932 |
| YP_007392716.1 | NC_020202_p12 | protein of an unannotated phage | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7061 | 7579 |
| YP_007392738.1 | NC_020202_p34 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 18396 | 18698 |
| YP_007392748.1 | NC_020202_p44 | protein of an unannotated phage | phrog_209 | portal protein | head and packaging | 1 | 23227 | 23706 |
| YP_007392755.1 | NC_020202_p51 | protein of an unannotated phage | phrog_687 | structural protein | head and packaging | 1 | 29819 | 30742 |
| YP_007392723.1 | NC_020202_p19 | protein of an unannotated phage | phrog_4093 | unknown function | unknown function | 1 | 9295 | 9591 |
| YP_007392760.1 | NC_020202_p56 | protein of an unannotated phage | phrog_1101 | tail protein | tail | 1 | 33709 | 35916 |
| YP_007392717.1 | NC_020202_p13 | protein of an unannotated phage | phrog_6755 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7581 | 7958 |
| YP_007392718.1 | NC_020202_p14 | protein of an unannotated phage | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 7960 | 8238 |
| YP_007392733.1 | NC_020202_p29 | protein of an unannotated phage | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12660 | 13160 |
| YP_007392706.1 | NC_020202_p2 | protein of an unannotated phage | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1056 | 1412 |
| YP_007392707.1 | NC_020202_p3 | protein of an unannotated phage | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1415 | 1849 |
| YP_007392753.1 | NC_020202_p49 | protein of an unannotated phage | phrog_24 | tail length tape measure protein | tail | 1 | 25296 | 28853 |
| YP_007392725.1 | NC_020202_p21 | protein of an unannotated phage | phrog_836 | late transcriptional activator | transcription regulation | 1 | 10021 | 10431 |
| YP_007392712.1 | NC_020202_p8 | protein of an unannotated phage | phrog_3190 | unknown function | unknown function | 1 | 5621 | 6256 |
| YP_007392749.1 | NC_020202_p45 | protein of an unannotated phage | phrog_3129 | unknown function | unknown function | 1 | 23694 | 23873 |
| YP_007392742.1 | NC_020202_p38 | protein of an unannotated phage | phrog_328 | head maturation protease | head and packaging | 1 | 19814 | 20920 |
| YP_007392715.1 | NC_020202_p11 | protein of an unannotated phage | phrog_2043 | unknown function | unknown function | 1 | 6751 | 7044 |
| YP_007392736.1 | NC_020202_p32 | protein of an unannotated phage | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 16530 | 17816 |
| YP_007392720.1 | NC_020202_p16 | protein of an unannotated phage | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 8463 | 8744 |
| YP_007392759.1 | NC_020202_p55 | protein of an unannotated phage | phrog_1196 | tail assembly chaperone | tail | 1 | 33501 | 33719 |
| YP_007392747.1 | NC_020202_p43 | protein of an unannotated phage | phrog_195 | head-tail adaptor | connector | 1 | 22814 | 23230 |
| YP_007392752.1 | NC_020202_p48 | protein of an unannotated phage | phrog_10839 | unknown function | unknown function | 1 | 25165 | 25293 |
| YP_007392709.1 | NC_020202_p5 | protein of an unannotated phage | phrog_310 | transposase | integration and excision | 1 | 2126 | 4120 |
| YP_007392756.1 | NC_020202_p52 | protein of an unannotated phage | phrog_1082 | tail assembly protein | tail | 1 | 30742 | 32445 |
| YP_007392758.1 | NC_020202_p54 | protein of an unannotated phage | phrog_1180 | tail assembly chaperone | tail | 1 | 33265 | 33504 |
| YP_007392710.1 | NC_020202_p6 | protein of an unannotated phage | phrog_296 | DNA transposition protein | integration and excision | 1 | 4135 | 4887 |
| YP_007392730.1 | NC_020202_p26 | protein of an unannotated phage | phrog_2975 | Rz-like spanin | lysis | 1 | 11951 | 12352 |
| YP_007392762.1 | NC_020202_p58 | protein of an unannotated phage | phrog_2432 | unknown function | unknown function | 1 | 37061 | 37348 |
| YP_007392743.1 | NC_020202_p39 | protein of an unannotated phage | phrog_1731 | virion structural protein | head and packaging | 1 | 20930 | 21328 |
| YP_007392737.1 | NC_020202_p33 | protein of an unannotated phage | phrog_26 | tail completion or Neck1 protein | connector | 1 | 17816 | 18283 |
| YP_007392713.1 | NC_020202_p9 | protein of an unannotated phage | phrog_3765 | unknown function | unknown function | 1 | 6241 | 6357 |
| YP_007392708.1 | NC_020202_p4 | protein of an unannotated phage | phrog_4468 | unknown function | unknown function | 1 | 1849 | 2058 |
| YP_007392744.1 | NC_020202_p40 | protein of an unannotated phage | phrog_371 | major head protein | head and packaging | 1 | 21356 | 22264 |