Genomic map of Pseudomonas phage JBD5 (NC_020202)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020202
Definition
Pseudomonas phage JBD5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus.
DB of origin
REFSEQ
Length
37740
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
64.26
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007392739.1 NC_020202_p35 protein of an unannotated phage phrog_9439 unknown function unknown function 1 18721 19140
YP_007392722.1 NC_020202_p18 protein of an unannotated phage phrog_3652 unknown function unknown function 1 8955 9224
YP_007392763.1 NC_020202_p59 protein of an unannotated phage phrog_2623 unknown function unknown function 1 37446 37646
YP_007392721.1 NC_020202_p17 protein of an unannotated phage phrog_3223 unknown function unknown function 1 8746 8952
YP_007392727.1 NC_020202_p23 protein of an unannotated phage phrog_1024 unknown function unknown function 1 10874 11296
YP_007392732.1 NC_020202_p28 protein of an unannotated phage phrog_1103 unknown function unknown function 1 12463 12651
YP_007392757.1 NC_020202_p53 protein of an unannotated phage phrog_778 tail assembly protein tail 1 32435 33256
YP_007392724.1 NC_020202_p20 protein of an unannotated phage phrog_286 unknown function unknown function 1 9588 9989
YP_007392719.1 NC_020202_p15 protein of an unannotated phage phrog_7895 unknown function unknown function 1 8240 8461
YP_007392705.1 NC_020202_p1 protein of an unannotated phage phrog_4 transcriptional repressor transcription regulation -1 173 886
YP_007392751.1 NC_020202_p47 protein of an unannotated phage phrog_1442 tail assembly chaperone tail 1 24680 25165
YP_007392741.1 NC_020202_p37 protein of an unannotated phage phrog_3865 unknown function unknown function 1 19373 19594
YP_007392711.1 NC_020202_p7 protein of an unannotated phage phrog_2030 transcriptional regulator transcription regulation 1 4884 5549
YP_007392714.1 NC_020202_p10 protein of an unannotated phage phrog_2119 unknown function unknown function 1 6357 6770
YP_007392726.1 NC_020202_p22 protein of an unannotated phage phrog_3648 unknown function unknown function 1 10534 10881
YP_007392750.1 NC_020202_p46 protein of an unannotated phage phrog_807 major tail protein with Ig-like domain tail 1 23906 24676
YP_007392740.1 NC_020202_p36 protein of an unannotated phage phrog_26475 unknown function unknown function 1 19137 19376
YP_007392729.1 NC_020202_p25 protein of an unannotated phage phrog_4057 unknown function unknown function 1 11712 11954
YP_007392754.1 NC_020202_p50 protein of an unannotated phage phrog_687 structural protein head and packaging 1 28861 29817
YP_007392745.1 NC_020202_p41 protein of an unannotated phage phrog_7976 unknown function unknown function 1 22276 22578
YP_007392735.1 NC_020202_p31 protein of an unannotated phage phrog_113 portal protein head and packaging 1 14944 16530
YP_007392746.1 NC_020202_p42 protein of an unannotated phage phrog_3376 unknown function unknown function 1 22641 22817
YP_007392761.1 NC_020202_p57 protein of an unannotated phage phrog_2875 virion structural protein head and packaging 1 35913 37064
YP_007392731.1 NC_020202_p27 protein of an unannotated phage phrog_8661 unknown function unknown function 1 12345 12458
YP_007392728.1 NC_020202_p24 protein of an unannotated phage phrog_873 endolysin head and packaging 1 11296 11712
YP_007392734.1 NC_020202_p30 protein of an unannotated phage phrog_38 terminase large subunit head and packaging 1 13157 14932
YP_007392716.1 NC_020202_p12 protein of an unannotated phage phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 7061 7579
YP_007392738.1 NC_020202_p34 protein of an unannotated phage singleton unknown function unknown function 1 18396 18698
YP_007392748.1 NC_020202_p44 protein of an unannotated phage phrog_209 portal protein head and packaging 1 23227 23706
YP_007392755.1 NC_020202_p51 protein of an unannotated phage phrog_687 structural protein head and packaging 1 29819 30742
YP_007392723.1 NC_020202_p19 protein of an unannotated phage phrog_4093 unknown function unknown function 1 9295 9591
YP_007392760.1 NC_020202_p56 protein of an unannotated phage phrog_1101 tail protein tail 1 33709 35916
YP_007392717.1 NC_020202_p13 protein of an unannotated phage phrog_6755 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 7581 7958
YP_007392718.1 NC_020202_p14 protein of an unannotated phage phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 7960 8238
YP_007392733.1 NC_020202_p29 protein of an unannotated phage phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 12660 13160
YP_007392706.1 NC_020202_p2 protein of an unannotated phage phrog_769 transcriptional repressor transcription regulation 1 1056 1412
YP_007392707.1 NC_020202_p3 protein of an unannotated phage phrog_2345 transcriptional regulator transcription regulation 1 1415 1849
YP_007392753.1 NC_020202_p49 protein of an unannotated phage phrog_24 tail length tape measure protein tail 1 25296 28853
YP_007392725.1 NC_020202_p21 protein of an unannotated phage phrog_836 late transcriptional activator transcription regulation 1 10021 10431
YP_007392712.1 NC_020202_p8 protein of an unannotated phage phrog_3190 unknown function unknown function 1 5621 6256
YP_007392749.1 NC_020202_p45 protein of an unannotated phage phrog_3129 unknown function unknown function 1 23694 23873
YP_007392742.1 NC_020202_p38 protein of an unannotated phage phrog_328 head maturation protease head and packaging 1 19814 20920
YP_007392715.1 NC_020202_p11 protein of an unannotated phage phrog_2043 unknown function unknown function 1 6751 7044
YP_007392736.1 NC_020202_p32 protein of an unannotated phage phrog_220 minor head protein and DNA pilot head and packaging 1 16530 17816
YP_007392720.1 NC_020202_p16 protein of an unannotated phage phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 8463 8744
YP_007392759.1 NC_020202_p55 protein of an unannotated phage phrog_1196 tail assembly chaperone tail 1 33501 33719
YP_007392747.1 NC_020202_p43 protein of an unannotated phage phrog_195 head-tail adaptor connector 1 22814 23230
YP_007392752.1 NC_020202_p48 protein of an unannotated phage phrog_10839 unknown function unknown function 1 25165 25293
YP_007392709.1 NC_020202_p5 protein of an unannotated phage phrog_310 transposase integration and excision 1 2126 4120
YP_007392756.1 NC_020202_p52 protein of an unannotated phage phrog_1082 tail assembly protein tail 1 30742 32445
YP_007392758.1 NC_020202_p54 protein of an unannotated phage phrog_1180 tail assembly chaperone tail 1 33265 33504
YP_007392710.1 NC_020202_p6 protein of an unannotated phage phrog_296 DNA transposition protein integration and excision 1 4135 4887
YP_007392730.1 NC_020202_p26 protein of an unannotated phage phrog_2975 Rz-like spanin lysis 1 11951 12352
YP_007392762.1 NC_020202_p58 protein of an unannotated phage phrog_2432 unknown function unknown function 1 37061 37348
YP_007392743.1 NC_020202_p39 protein of an unannotated phage phrog_1731 virion structural protein head and packaging 1 20930 21328
YP_007392737.1 NC_020202_p33 protein of an unannotated phage phrog_26 tail completion or Neck1 protein connector 1 17816 18283
YP_007392713.1 NC_020202_p9 protein of an unannotated phage phrog_3765 unknown function unknown function 1 6241 6357
YP_007392708.1 NC_020202_p4 protein of an unannotated phage phrog_4468 unknown function unknown function 1 1849 2058
YP_007392744.1 NC_020202_p40 protein of an unannotated phage phrog_371 major head protein head and packaging 1 21356 22264