| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020205 |
Definition |
Xanthomonas citri phage CP2 DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
42963 |
Host Name |
Xanthomonas citri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
40 |
%GC |
67.01 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007392909.1 | NC_020205_p20 | protein of an unannotated phage | phrog_20269 | unknown function | unknown function | 1 | 15292 | 16683 |
| YP_007392921.1 | NC_020205_p32 | protein of an unannotated phage | phrog_4405 | unknown function | unknown function | -1 | 34225 | 34710 |
| YP_007392891.1 | NC_020205_p2 | protein of an unannotated phage | phrog_2045 | unknown function | unknown function | 1 | 454 | 1398 |
| YP_007392920.1 | NC_020205_p31 | protein of an unannotated phage | phrog_322 | unknown function | unknown function | -1 | 33829 | 34191 |
| YP_007392926.1 | NC_020205_p37 | protein of an unannotated phage | phrog_17928 | unknown function | unknown function | -1 | 37496 | 39031 |
| YP_007392908.1 | NC_020205_p19 | protein of an unannotated phage | phrog_394 | tail protein | tail | 1 | 14607 | 15290 |
| YP_007392893.1 | NC_020205_p4 | protein of an unannotated phage | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 2262 | 2717 |
| YP_007392923.1 | NC_020205_p34 | protein of an unannotated phage | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 35157 | 35534 |
| YP_007392914.1 | NC_020205_p25 | protein of an unannotated phage | phrog_9880 | unknown function | unknown function | 1 | 21566 | 29002 |
| YP_007392910.1 | NC_020205_p21 | protein of an unannotated phage | phrog_15566 | tail protein | tail | 1 | 16683 | 18395 |
| YP_007392915.1 | NC_020205_p26 | protein of an unannotated phage | phrog_2710 | tail fiber protein | tail | 1 | 29002 | 30111 |
| YP_007392906.1 | NC_020205_p17 | protein of an unannotated phage | phrog_427 | unknown function | unknown function | 1 | 13447 | 13893 |
| YP_007392912.1 | NC_020205_p23 | protein of an unannotated phage | phrog_418 | internal virion protein | head and packaging | 1 | 18868 | 19371 |
| YP_007392890.1 | NC_020205_p1 | protein of an unannotated phage | phrog_9474 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 231 |
| YP_007392890.1 | NC_020205_p1 | protein of an unannotated phage | phrog_9474 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 42178 | 42963 |
| YP_007392907.1 | NC_020205_p18 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 13947 | 14537 |
| YP_007392929.1 | NC_020205_p40 | protein of an unannotated phage | phrog_27658 | unknown function | unknown function | 1 | 41829 | 42176 |
| YP_007392911.1 | NC_020205_p22 | protein of an unannotated phage | phrog_308 | internal virion protein | head and packaging | 1 | 18392 | 18868 |
| YP_007392928.1 | NC_020205_p39 | protein of an unannotated phage | phrog_204 | unknown function | unknown function | -1 | 39951 | 40325 |
| YP_007392894.1 | NC_020205_p5 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 2936 | 3952 |
| YP_007392900.1 | NC_020205_p11 | protein of an unannotated phage | phrog_1482 | terminase small subunit | head and packaging | 1 | 6712 | 7149 |
| YP_007392913.1 | NC_020205_p24 | protein of an unannotated phage | phrog_10475 | endolysin | lysis | 1 | 19371 | 21563 |
| YP_007392897.1 | NC_020205_p8 | protein of an unannotated phage | phrog_14255 | unknown function | unknown function | 1 | 5105 | 5662 |
| YP_007392901.1 | NC_020205_p12 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 7289 | 8815 |
| YP_007392903.1 | NC_020205_p14 | protein of an unannotated phage | phrog_332 | head-tail adaptor | connector | 1 | 9234 | 11294 |
| YP_007392924.1 | NC_020205_p35 | protein of an unannotated phage | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 35534 | 36157 |
| YP_007392917.1 | NC_020205_p28 | protein of an unannotated phage | phrog_4176 | tail fiber protein | tail | 1 | 31311 | 32243 |
| YP_007392905.1 | NC_020205_p16 | protein of an unannotated phage | phrog_212 | major head protein | head and packaging | 1 | 12398 | 13411 |
| YP_007392927.1 | NC_020205_p38 | protein of an unannotated phage | phrog_210 | unknown function | unknown function | -1 | 39072 | 39896 |
| YP_007392916.1 | NC_020205_p27 | protein of an unannotated phage | phrog_12940 | tail fiber protein | tail | 1 | 30289 | 31314 |
| YP_007392896.1 | NC_020205_p7 | protein of an unannotated phage | phrog_13992 | unknown function | unknown function | 1 | 4635 | 5108 |
| YP_007392898.1 | NC_020205_p9 | protein of an unannotated phage | phrog_11951 | Rz-like spanin | lysis | 1 | 5665 | 5979 |
| YP_007392919.1 | NC_020205_p30 | protein of an unannotated phage | phrog_2831 | unknown function | unknown function | -1 | 33018 | 33584 |
| YP_007392899.1 | NC_020205_p10 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 6031 | 6360 |
| YP_007392904.1 | NC_020205_p15 | protein of an unannotated phage | phrog_458 | protease | other | 1 | 11629 | 12354 |
| YP_007392925.1 | NC_020205_p36 | protein of an unannotated phage | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 36385 | 37227 |
| YP_007392892.1 | NC_020205_p3 | protein of an unannotated phage | phrog_319 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 1460 | 1945 |
| YP_007392922.1 | NC_020205_p33 | protein of an unannotated phage | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 34723 | 35160 |
| YP_007392918.1 | NC_020205_p29 | protein of an unannotated phage | phrog_4950 | tail fiber protein | tail | 1 | 32233 | 32808 |
| YP_007392895.1 | NC_020205_p6 | protein of an unannotated phage | phrog_7 | endolysin | lysis | 1 | 4030 | 4632 |
| YP_007392902.1 | NC_020205_p13 | protein of an unannotated phage | phrog_825 | unknown function | unknown function | 1 | 8820 | 9158 |