| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020488 |
Definition |
Vibrio phage VvAW1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
38682 |
Host Name |
Vibrio vulnificus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
40 |
%GC |
49.11 |
Number of singletons |
7 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007518348.1 | NC_020488_p6 | phage tail collar protein | singleton | unknown function | unknown function | -1 | 13350 | 14042 |
| YP_007518356.1 | NC_020488_p14 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 22578 | 23201 |
| YP_007518369.1 | NC_020488_p27 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 28464 | 29087 |
| YP_007518372.1 | NC_020488_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31486 | 31785 |
| YP_007518357.1 | NC_020488_p15 | hypothetical protein | phrog_5335 | unknown function | unknown function | -1 | 23211 | 23732 |
| YP_007518349.1 | NC_020488_p7 | hypothetical protein | phrog_578 | head closure Hc3 | connector | -1 | 14042 | 15427 |
| YP_007518346.1 | NC_020488_p4 | hypothetical protein | phrog_24280 | tail fiber adhesin | tail | -1 | 12501 | 12995 |
| YP_007518377.1 | NC_020488_p35 | hypothetical protein | phrog_10105 | unknown function | unknown function | 1 | 33623 | 34267 |
| YP_007518368.1 | NC_020488_p26 | RNA-binding regulator protein | phrog_9500 | CsrA-like regulator | transcription regulation | -1 | 28277 | 28489 |
| YP_007518351.1 | NC_020488_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16103 | 16456 |
| YP_007518366.1 | NC_020488_p24 | hypothetical protein | phrog_204 | unknown function | unknown function | -1 | 27362 | 27730 |
| YP_007518375.1 | NC_020488_p33 | hypothetical protein | phrog_16167 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 32319 | 33212 |
| YP_007518347.1 | NC_020488_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12995 | 13339 |
| YP_007518344.1 | NC_020488_p2 | hypothetical protein | phrog_36852 | unknown function | unknown function | -1 | 10949 | 11836 |
| YP_007518360.1 | NC_020488_p18 | hypothetical protein | phrog_9646 | unknown function | unknown function | -1 | 24443 | 24838 |
| YP_007518361.1 | NC_020488_p19 | hypothetical protein | phrog_465 | endolysin | lysis | -1 | 24835 | 25260 |
| YP_007518365.1 | NC_020488_p23 | protein of unknown function (DUF2303) | phrog_210 | unknown function | unknown function | -1 | 26483 | 27304 |
| YP_007518358.1 | NC_020488_p16 | hypothetical protein | phrog_785 | holin | lysis | -1 | 23736 | 24131 |
| YP_007518381.1 | NC_020488_p39 | hypothetical protein | phrog_4390 | unknown function | unknown function | -1 | 35529 | 36275 |
| YP_007518378.1 | NC_020488_p36 | hypothetical protein | phrog_7839 | unknown function | unknown function | 1 | 34257 | 34583 |
| YP_007518380.1 | NC_020488_p38 | protein of unknown function (DUF1364) | phrog_131 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 35192 | 35509 |
| YP_007518364.1 | NC_020488_p22 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26075 | 26446 |
| YP_007518352.1 | NC_020488_p10 | P22 coat protein | phrog_283 | major head protein | head and packaging | -1 | 16511 | 17770 |
| YP_007518371.1 | NC_020488_p29 | hypothetical protein | phrog_7838 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 30317 | 31138 |
| YP_007518362.1 | NC_020488_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25295 | 25504 |
| YP_007518363.1 | NC_020488_p21 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25567 | 26091 |
| YP_007518374.1 | NC_020488_p32 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 32101 | 32316 |
| YP_007518343.1 | NC_020488_p1 | DNA methylase | phrog_1685 | unknown function | unknown function | -1 | 19 | 10941 |
| YP_007518345.1 | NC_020488_p3 | hypothetical protein | phrog_598 | DNA ejection | DNA, RNA and nucleotide metabolism | -1 | 11839 | 12525 |
| YP_007518376.1 | NC_020488_p34 | protein of unknown function (DUF3268) | phrog_1934 | unknown function | unknown function | 1 | 33223 | 33636 |
| YP_007518354.1 | NC_020488_p12 | hypothetical protein | phrog_156 | portal protein | head and packaging | -1 | 18880 | 20946 |
| YP_007518373.1 | NC_020488_p31 | hypothetical protein | phrog_6168 | unknown function | unknown function | -1 | 31775 | 31963 |
| YP_007518350.1 | NC_020488_p8 | hypothetical protein | phrog_12985 | unknown function | unknown function | -1 | 15424 | 16128 |
| YP_007518379.1 | NC_020488_p37 | protein of unknown function (DUF1367) | phrog_319 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 34587 | 35189 |
| YP_007518370.1 | NC_020488_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29125 | 30276 |
| YP_007518382.1 | NC_020488_p40 | hypothetical protein | phrog_4201 | tail fiber protein | tail | -1 | 36287 | 38653 |
| YP_007518355.1 | NC_020488_p13 | conserved uncharacterized protein | phrog_38 | terminase large subunit | head and packaging | -1 | 20959 | 22581 |
| YP_007518359.1 | NC_020488_p17 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24124 | 24468 |
| YP_007518353.1 | NC_020488_p11 | hypothetical protein | phrog_8865 | head scaffolding protein | head and packaging | -1 | 17794 | 18780 |
| YP_007518367.1 | NC_020488_p25 | hypothetical protein | phrog_3377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27714 | 28298 |