Genomic map of Vibrio phage VvAW1 (NC_020488)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020488
Definition
Vibrio phage VvAW1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
38682
Host Name
Vibrio vulnificus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
40
%GC
49.11
Number of singletons
7
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007518348.1 NC_020488_p6 phage tail collar protein singleton unknown function unknown function -1 13350 14042
YP_007518356.1 NC_020488_p14 terminase small subunit phrog_51 terminase small subunit head and packaging -1 22578 23201
YP_007518369.1 NC_020488_p27 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 28464 29087
YP_007518372.1 NC_020488_p30 hypothetical protein singleton unknown function unknown function -1 31486 31785
YP_007518357.1 NC_020488_p15 hypothetical protein phrog_5335 unknown function unknown function -1 23211 23732
YP_007518349.1 NC_020488_p7 hypothetical protein phrog_578 head closure Hc3 connector -1 14042 15427
YP_007518346.1 NC_020488_p4 hypothetical protein phrog_24280 tail fiber adhesin tail -1 12501 12995
YP_007518377.1 NC_020488_p35 hypothetical protein phrog_10105 unknown function unknown function 1 33623 34267
YP_007518368.1 NC_020488_p26 RNA-binding regulator protein phrog_9500 CsrA-like regulator transcription regulation -1 28277 28489
YP_007518351.1 NC_020488_p9 hypothetical protein singleton unknown function unknown function -1 16103 16456
YP_007518366.1 NC_020488_p24 hypothetical protein phrog_204 unknown function unknown function -1 27362 27730
YP_007518375.1 NC_020488_p33 hypothetical protein phrog_16167 replication initiation protein DNA, RNA and nucleotide metabolism 1 32319 33212
YP_007518347.1 NC_020488_p5 hypothetical protein singleton unknown function unknown function -1 12995 13339
YP_007518344.1 NC_020488_p2 hypothetical protein phrog_36852 unknown function unknown function -1 10949 11836
YP_007518360.1 NC_020488_p18 hypothetical protein phrog_9646 unknown function unknown function -1 24443 24838
YP_007518361.1 NC_020488_p19 hypothetical protein phrog_465 endolysin lysis -1 24835 25260
YP_007518365.1 NC_020488_p23 protein of unknown function (DUF2303) phrog_210 unknown function unknown function -1 26483 27304
YP_007518358.1 NC_020488_p16 hypothetical protein phrog_785 holin lysis -1 23736 24131
YP_007518381.1 NC_020488_p39 hypothetical protein phrog_4390 unknown function unknown function -1 35529 36275
YP_007518378.1 NC_020488_p36 hypothetical protein phrog_7839 unknown function unknown function 1 34257 34583
YP_007518380.1 NC_020488_p38 protein of unknown function (DUF1364) phrog_131 HNH endonuclease DNA, RNA and nucleotide metabolism 1 35192 35509
YP_007518364.1 NC_020488_p22 hypothetical protein singleton unknown function unknown function -1 26075 26446
YP_007518352.1 NC_020488_p10 P22 coat protein phrog_283 major head protein head and packaging -1 16511 17770
YP_007518371.1 NC_020488_p29 hypothetical protein phrog_7838 exonuclease DNA, RNA and nucleotide metabolism -1 30317 31138
YP_007518362.1 NC_020488_p20 hypothetical protein singleton unknown function unknown function -1 25295 25504
YP_007518363.1 NC_020488_p21 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 25567 26091
YP_007518374.1 NC_020488_p32 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 32101 32316
YP_007518343.1 NC_020488_p1 DNA methylase phrog_1685 unknown function unknown function -1 19 10941
YP_007518345.1 NC_020488_p3 hypothetical protein phrog_598 DNA ejection DNA, RNA and nucleotide metabolism -1 11839 12525
YP_007518376.1 NC_020488_p34 protein of unknown function (DUF3268) phrog_1934 unknown function unknown function 1 33223 33636
YP_007518354.1 NC_020488_p12 hypothetical protein phrog_156 portal protein head and packaging -1 18880 20946
YP_007518373.1 NC_020488_p31 hypothetical protein phrog_6168 unknown function unknown function -1 31775 31963
YP_007518350.1 NC_020488_p8 hypothetical protein phrog_12985 unknown function unknown function -1 15424 16128
YP_007518379.1 NC_020488_p37 protein of unknown function (DUF1367) phrog_319 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 34587 35189
YP_007518370.1 NC_020488_p28 hypothetical protein singleton unknown function unknown function -1 29125 30276
YP_007518382.1 NC_020488_p40 hypothetical protein phrog_4201 tail fiber protein tail -1 36287 38653
YP_007518355.1 NC_020488_p13 conserved uncharacterized protein phrog_38 terminase large subunit head and packaging -1 20959 22581
YP_007518359.1 NC_020488_p17 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 24124 24468
YP_007518353.1 NC_020488_p11 hypothetical protein phrog_8865 head scaffolding protein head and packaging -1 17794 18780
YP_007518367.1 NC_020488_p25 hypothetical protein phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism -1 27714 28298