Genomic map of Rhodobacter phage RcapNL (NC_020489)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020489
Definition
Rhodobacter phage RcapNL, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40489
Host Name
Rhodobacter capsulatus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
64
%GC
65.11
Number of singletons
33
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007518393.1 NC_020489_p11 phage head-tail adapter protein phrog_25 head closure Hc1 connector 1 8476 8805
YP_007518412.1 NC_020489_p30 hypothetical protein singleton unknown function unknown function 1 20845 21279
YP_007518431.1 NC_020489_p49 hypothetical protein singleton unknown function unknown function -1 31159 31389
YP_007518434.1 NC_020489_p52 hypothetical protein singleton unknown function unknown function 1 32387 32674
YP_007518396.1 NC_020489_p14 gene transfer agent (GTA) orfg8-like protein phrog_176 tail terminator connector 1 9477 9887
YP_007518426.1 NC_020489_p44 hypothetical protein singleton unknown function unknown function -1 29608 29844
YP_007518425.1 NC_020489_p43 hypothetical protein phrog_204 unknown function unknown function -1 29026 29382
YP_007518394.1 NC_020489_p12 hypothetical protein singleton unknown function unknown function -1 8802 9113
YP_007518440.1 NC_020489_p58 hypothetical protein singleton unknown function unknown function 1 35650 35841
YP_007518411.1 NC_020489_p29 tail fiber protein phrog_12296 tail fiber protein tail 1 20588 20845
YP_007518435.1 NC_020489_p53 hypothetical protein singleton unknown function unknown function 1 32855 33286
YP_007518422.1 NC_020489_p40 hypothetical protein singleton unknown function unknown function -1 27530 27694
YP_007518389.1 NC_020489_p7 HK97 family major capsid protein phrog_10 major head protein head and packaging 1 5825 7129
YP_007518384.1 NC_020489_p2 HNH endonuclease phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1007 1372
YP_007518443.1 NC_020489_p61 phage P4 alpha zn-binding domain-containing protein phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 36607 37773
YP_007518441.1 NC_020489_p59 hypothetical protein singleton unknown function unknown function 1 35838 36131
YP_007518420.1 NC_020489_p38 PRK12775-containing protein phrog_26142 unknown function unknown function -1 25421 25654
YP_007518430.1 NC_020489_p48 hypothetical protein singleton unknown function unknown function -1 30851 31159
YP_007518436.1 NC_020489_p54 hypothetical protein singleton unknown function unknown function 1 33380 33652
YP_007518429.1 NC_020489_p47 hypothetical protein singleton unknown function unknown function -1 30388 30657
YP_007518391.1 NC_020489_p9 hypothetical protein phrog_2616 unknown function unknown function 1 7675 7896
YP_007518403.1 NC_020489_p21 hypothetical protein singleton unknown function unknown function 1 14286 14873
YP_007518408.1 NC_020489_p26 hypothetical protein phrog_126 holin/anti-holin lysis 1 19419 19739
YP_007518409.1 NC_020489_p27 peptidoglycan-binding protein phrog_1259 baseplate hub subunit and tail lysozyme tail 1 19742 20365
YP_007518404.1 NC_020489_p22 hypothetical protein phrog_2134 unknown function unknown function 1 14870 15286
YP_007518397.1 NC_020489_p15 gene transfer aget (GTA) orfg9-like phage major tail protein phrog_1407 major tail protein tail 1 9923 10354
YP_007518446.1 NC_020489_p64 P4 family phage/plasmid primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 38301 40169
YP_007518390.1 NC_020489_p8 hypothetical protein phrog_5707 unknown function unknown function 1 7217 7678
YP_007518414.1 NC_020489_p32 XRE family transcriptional regulator phrog_14076 transcriptional regulator transcription regulation -1 21649 21870
YP_007518387.1 NC_020489_p5 HK97 family portal protein phrog_12 portal protein head and packaging 1 3606 4886
YP_007518392.1 NC_020489_p10 hypothetical protein phrog_442 head-tail adaptor connector 1 7898 8476
YP_007518388.1 NC_020489_p6 peptidase S49 phrog_53 head maturation protease head and packaging 1 4876 5823
YP_007518437.1 NC_020489_p55 hypothetical protein singleton unknown function unknown function 1 33649 34965
YP_007518428.1 NC_020489_p46 hypothetical protein singleton unknown function unknown function -1 30151 30378
YP_007518385.1 NC_020489_p3 hypothetical protein phrog_12540 unknown function unknown function 1 1431 1919
YP_007518386.1 NC_020489_p4 large terminase phrog_9 terminase large subunit head and packaging 1 1906 3603
YP_007518423.1 NC_020489_p41 hypothetical protein singleton unknown function unknown function -1 27767 27973
YP_007518413.1 NC_020489_p31 hypothetical protein singleton unknown function unknown function -1 21331 21639
YP_007518439.1 NC_020489_p57 hypothetical protein phrog_27524 unknown function unknown function 1 35303 35653
YP_007518432.1 NC_020489_p50 phage repressor phrog_4 transcriptional repressor transcription regulation -1 31403 32041
YP_007518442.1 NC_020489_p60 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 36128 36610
YP_007518418.1 NC_020489_p36 phage Gp37Gp68 family protein phrog_2045 unknown function unknown function -1 23844 24926
YP_007518401.1 NC_020489_p19 phage tape measure protein singleton unknown function unknown function 1 12971 13657
YP_007518402.1 NC_020489_p20 hypothetical protein phrog_1302 distal tail protein tail 1 13654 14304
YP_007518395.1 NC_020489_p13 phage HK97 gp10-like protein singleton neck protein Ne1 connector 1 9125 9484
YP_007518399.1 NC_020489_p17 hypothetical protein singleton unknown function unknown function -1 10917 11177
YP_007518407.1 NC_020489_p25 hypothetical protein singleton unknown function unknown function 1 17444 19399
YP_007518445.1 NC_020489_p63 hypothetical protein singleton unknown function unknown function 1 37996 38301
YP_007518444.1 NC_020489_p62 hypothetical protein singleton unknown function unknown function 1 37763 37996
YP_007518424.1 NC_020489_p42 DUF2303-containing protein phrog_210 unknown function unknown function -1 28042 29010
YP_007518400.1 NC_020489_p18 phage tail-related protein singleton unknown function unknown function 1 11367 12926
YP_007518415.1 NC_020489_p33 hypothetical protein singleton unknown function unknown function -1 21937 22164
YP_007518438.1 NC_020489_p56 hypothetical protein phrog_6628 unknown function unknown function 1 34962 35306
YP_007518421.1 NC_020489_p39 C-5 cytosine-specific DNA methylase phrog_116 DNA methyltransferase other -1 25647 27530
YP_007518417.1 NC_020489_p35 hypothetical protein singleton unknown function unknown function -1 23609 23851
YP_007518383.1 NC_020489_p1 hypothetical protein singleton unknown function unknown function 1 139 897
YP_007518405.1 NC_020489_p23 hypothetical protein singleton unknown function unknown function 1 15274 15702
YP_007518419.1 NC_020489_p37 hypothetical protein singleton unknown function unknown function -1 24919 25428
YP_007518398.1 NC_020489_p16 hypothetical protein singleton unknown function unknown function 1 10354 10926
YP_007518433.1 NC_020489_p51 hypothetical protein singleton unknown function unknown function 1 32098 32385
YP_007518410.1 NC_020489_p28 hypothetical protein singleton unknown function unknown function 1 20375 20578
YP_007518406.1 NC_020489_p24 phage tail component protein phrog_5616 tail fiber protein tail 1 15669 17432
YP_007518427.1 NC_020489_p45 hypothetical protein singleton unknown function unknown function -1 29837 30097
YP_007518416.1 NC_020489_p34 phage integrase/recombinase phrog_1 integrase integration and excision -1 22539 23639