| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020490 |
Definition |
Staphylococcus phage StB12, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
44714 |
Host Name |
Staphylococcus hominis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
34.17 |
Number of singletons |
7 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009130682.1 | NC_020490_p3 | phage repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2292 | 2546 |
| YP_009130692.1 | NC_020490_p13 | ERF-like recombinase | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6176 | 6838 |
| YP_009130750.1 | NC_020490_p71 | holin | phrog_263 | holin | lysis | 1 | 41762 | 42055 |
| YP_009130707.1 | NC_020490_p28 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12915 | 13631 |
| YP_009130732.1 | NC_020490_p53 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 25388 | 25753 |
| YP_009130681.1 | NC_020490_p2 | phage repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 1462 | 2100 |
| YP_009130691.1 | NC_020490_p12 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 5690 | 6175 |
| YP_009130694.1 | NC_020490_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7283 | 7588 |
| YP_009130703.1 | NC_020490_p24 | hypothetical protein | phrog_36810 | unknown function | unknown function | 1 | 11769 | 11951 |
| YP_009130723.1 | NC_020490_p44 | portal protein SPP1 family | phrog_64 | portal protein | head and packaging | 1 | 19340 | 20818 |
| YP_009130714.1 | NC_020490_p35 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 15693 | 15896 |
| YP_009130748.1 | NC_020490_p69 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 40886 | 41029 |
| YP_009130749.1 | NC_020490_p70 | hypothetical protein | phrog_4175 | poly-gamma-glutamate hydrolase | other | 1 | 41088 | 41708 |
| YP_009130738.1 | NC_020490_p59 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 31078 | 32034 |
| YP_009130715.1 | NC_020490_p36 | hypothetical protein | phrog_17364 | unknown function | unknown function | 1 | 15909 | 16187 |
| YP_009130734.1 | NC_020490_p55 | major tail protein | phrog_238 | major tail protein | tail | 1 | 26190 | 26735 |
| YP_009130701.1 | NC_020490_p22 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11082 | 11408 |
| YP_009130680.1 | NC_020490_p1 | integrase/serine site-specific recombinase | phrog_95 | integrase | integration and excision | -1 | 30 | 1415 |
| YP_009130740.1 | NC_020490_p61 | Zn carboxypeptidase | phrog_4722 | zinc carboxypeptidase | other | 1 | 33305 | 35242 |
| YP_009130706.1 | NC_020490_p27 | hypothetical protein | phrog_14162 | unknown function | unknown function | 1 | 12610 | 12912 |
| YP_009130687.1 | NC_020490_p8 | hypothetical protein | phrog_4989 | unknown function | unknown function | -1 | 4545 | 5009 |
| YP_009130737.1 | NC_020490_p58 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 27568 | 31065 |
| YP_009130699.1 | NC_020490_p20 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 10649 | 10831 |
| YP_009130700.1 | NC_020490_p21 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 10847 | 11071 |
| YP_009130731.1 | NC_020490_p52 | minor head protein | phrog_348 | minor head protein | head and packaging | 1 | 25086 | 25388 |
| YP_009130728.1 | NC_020490_p49 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 23486 | 24466 |
| YP_009130729.1 | NC_020490_p50 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 24489 | 24758 |
| YP_009130733.1 | NC_020490_p54 | head structural protein | phrog_176 | tail terminator | connector | 1 | 25754 | 26143 |
| YP_009130727.1 | NC_020490_p48 | scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 22860 | 23384 |
| YP_009130695.1 | NC_020490_p16 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 7589 | 8266 |
| YP_009130739.1 | NC_020490_p60 | endopeptidase | phrog_326 | tail protein with endopeptidase domain | other | 1 | 32044 | 33294 |
| YP_009130705.1 | NC_020490_p26 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 12156 | 12620 |
| YP_009130725.1 | NC_020490_p46 | hypothetical protein | phrog_14482 | unknown function | unknown function | 1 | 22321 | 22473 |
| YP_009130697.1 | NC_020490_p18 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 9059 | 9415 |
| YP_009130690.1 | NC_020490_p11 | hypothetical protein | phrog_3119 | unknown function | unknown function | 1 | 5442 | 5642 |
| YP_009130719.1 | NC_020490_p40 | hypothetical protein | phrog_1058 | unknown function | unknown function | 1 | 16915 | 17316 |
| YP_009130721.1 | NC_020490_p42 | TerS | phrog_51 | terminase small subunit | head and packaging | 1 | 17547 | 18041 |
| YP_009130726.1 | NC_020490_p47 | hypothetical protein | phrog_12256 | unknown function | unknown function | 1 | 22466 | 22615 |
| YP_009130746.1 | NC_020490_p67 | tail protein | phrog_257 | minor tail protein | tail | 1 | 39489 | 40535 |
| YP_009130693.1 | NC_020490_p14 | DNA single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 6852 | 7271 |
| YP_009130708.1 | NC_020490_p29 | hypothetical protein | phrog_3683 | unknown function | unknown function | 1 | 13628 | 13813 |
| YP_009130753.1 | NC_020490_p74 | hypothetical protein | phrog_7090 | unknown function | unknown function | 1 | 44192 | 44596 |
| YP_009130688.1 | NC_020490_p9 | hypothetical protein | phrog_36581 | unknown function | unknown function | 1 | 5066 | 5197 |
| YP_009130744.1 | NC_020490_p65 | peptidoglycan hydrolase | phrog_8781 | endolysin | lysis | 1 | 37304 | 37543 |
| YP_009130741.1 | NC_020490_p62 | tail protein | phrog_257 | minor tail protein | tail | 1 | 35427 | 36383 |
| YP_009130751.1 | NC_020490_p72 | lysin | phrog_489 | endolysin | lysis | 1 | 42066 | 43517 |
| YP_009130698.1 | NC_020490_p19 | helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 9402 | 10652 |
| YP_009130735.1 | NC_020490_p56 | tail assembly protein | phrog_183 | tail chaperone protein | tail | 1 | 26801 | 27166 |
| YP_009130720.1 | NC_020490_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17313 | 17528 |
| YP_009130717.1 | NC_020490_p38 | hypothetical protein | phrog_2409 | unknown function | unknown function | 1 | 16347 | 16790 |
| YP_009130686.1 | NC_020490_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4478 | 4555 |
| YP_009130689.1 | NC_020490_p10 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 5172 | 5357 |
| YP_009130752.1 | NC_020490_p73 | hypothetical protein | phrog_5881 | unknown function | unknown function | 1 | 43788 | 44189 |
| YP_009130745.1 | NC_020490_p66 | peptidoglycan hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 37916 | 39436 |
| YP_009130683.1 | NC_020490_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2686 | 3414 |
| YP_009130736.1 | NC_020490_p57 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 27208 | 27555 |
| YP_009130709.1 | NC_020490_p30 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 13810 | 14217 |
| YP_009130712.1 | NC_020490_p33 | hypothetical protein | phrog_38335 | unknown function | unknown function | 1 | 14862 | 15107 |
| YP_009130747.1 | NC_020490_p68 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 40549 | 40893 |
| YP_009130722.1 | NC_020490_p43 | TerL | phrog_2 | terminase large subunit | head and packaging | 1 | 18022 | 19326 |
| YP_009130742.1 | NC_020490_p63 | holin | phrog_199 | holin | lysis | 1 | 36405 | 36896 |
| YP_009130713.1 | NC_020490_p34 | dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 15108 | 15653 |
| YP_009130710.1 | NC_020490_p31 | nuclease | phrog_452 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14218 | 14562 |
| YP_009130730.1 | NC_020490_p51 | DNA packaging minor head protein | phrog_132 | head-tail adaptor | connector | 1 | 24760 | 25089 |
| YP_009130718.1 | NC_020490_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16787 | 16864 |
| YP_009130724.1 | NC_020490_p45 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 20815 | 22320 |
| YP_009130704.1 | NC_020490_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11956 | 12159 |
| YP_009130743.1 | NC_020490_p64 | peptidoglycan hydrolase | phrog_22714 | unknown function | unknown function | 1 | 36946 | 37065 |
| YP_009130702.1 | NC_020490_p23 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 11395 | 11769 |
| YP_009130711.1 | NC_020490_p32 | hypothetical protein | phrog_4380 | unknown function | unknown function | 1 | 14567 | 14869 |
| YP_009130685.1 | NC_020490_p6 | hypothetical protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 3647 | 4414 |
| YP_009130684.1 | NC_020490_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3429 | 3647 |
| YP_009130716.1 | NC_020490_p37 | RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 16180 | 16347 |
| YP_009130696.1 | NC_020490_p17 | replication initiation protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8259 | 9053 |