Genomic map of Staphylococcus phage StB12 (NC_020490)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020490
Definition
Staphylococcus phage StB12, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
44714
Host Name
Staphylococcus hominis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
74
%GC
34.17
Number of singletons
7
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009130682.1 NC_020490_p3 phage repressor phrog_3 transcriptional repressor transcription regulation 1 2292 2546
YP_009130692.1 NC_020490_p13 ERF-like recombinase phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6176 6838
YP_009130750.1 NC_020490_p71 holin phrog_263 holin lysis 1 41762 42055
YP_009130707.1 NC_020490_p28 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 12915 13631
YP_009130732.1 NC_020490_p53 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 25388 25753
YP_009130681.1 NC_020490_p2 phage repressor phrog_4 transcriptional repressor transcription regulation -1 1462 2100
YP_009130691.1 NC_020490_p12 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 5690 6175
YP_009130694.1 NC_020490_p15 hypothetical protein singleton unknown function unknown function 1 7283 7588
YP_009130703.1 NC_020490_p24 hypothetical protein phrog_36810 unknown function unknown function 1 11769 11951
YP_009130723.1 NC_020490_p44 portal protein SPP1 family phrog_64 portal protein head and packaging 1 19340 20818
YP_009130714.1 NC_020490_p35 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 15693 15896
YP_009130748.1 NC_020490_p69 hypothetical protein phrog_134 unknown function unknown function 1 40886 41029
YP_009130749.1 NC_020490_p70 hypothetical protein phrog_4175 poly-gamma-glutamate hydrolase other 1 41088 41708
YP_009130738.1 NC_020490_p59 minor tail protein phrog_33 distal tail protein Dit tail 1 31078 32034
YP_009130715.1 NC_020490_p36 hypothetical protein phrog_17364 unknown function unknown function 1 15909 16187
YP_009130734.1 NC_020490_p55 major tail protein phrog_238 major tail protein tail 1 26190 26735
YP_009130701.1 NC_020490_p22 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 11082 11408
YP_009130680.1 NC_020490_p1 integrase/serine site-specific recombinase phrog_95 integrase integration and excision -1 30 1415
YP_009130740.1 NC_020490_p61 Zn carboxypeptidase phrog_4722 zinc carboxypeptidase other 1 33305 35242
YP_009130706.1 NC_020490_p27 hypothetical protein phrog_14162 unknown function unknown function 1 12610 12912
YP_009130687.1 NC_020490_p8 hypothetical protein phrog_4989 unknown function unknown function -1 4545 5009
YP_009130737.1 NC_020490_p58 tail tape measure protein phrog_58 tail length tape measure protein tail 1 27568 31065
YP_009130699.1 NC_020490_p20 hypothetical protein phrog_3161 unknown function unknown function 1 10649 10831
YP_009130700.1 NC_020490_p21 hypothetical protein phrog_433 unknown function unknown function 1 10847 11071
YP_009130731.1 NC_020490_p52 minor head protein phrog_348 minor head protein head and packaging 1 25086 25388
YP_009130728.1 NC_020490_p49 major head protein phrog_10 major head protein head and packaging 1 23486 24466
YP_009130729.1 NC_020490_p50 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 24489 24758
YP_009130733.1 NC_020490_p54 head structural protein phrog_176 tail terminator connector 1 25754 26143
YP_009130727.1 NC_020490_p48 scaffold protein phrog_172 head scaffolding protein head and packaging 1 22860 23384
YP_009130695.1 NC_020490_p16 hypothetical protein phrog_398 unknown function unknown function 1 7589 8266
YP_009130739.1 NC_020490_p60 endopeptidase phrog_326 tail protein with endopeptidase domain other 1 32044 33294
YP_009130705.1 NC_020490_p26 hypothetical protein phrog_1689 nucleotide kinase other 1 12156 12620
YP_009130725.1 NC_020490_p46 hypothetical protein phrog_14482 unknown function unknown function 1 22321 22473
YP_009130697.1 NC_020490_p18 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 9059 9415
YP_009130690.1 NC_020490_p11 hypothetical protein phrog_3119 unknown function unknown function 1 5442 5642
YP_009130719.1 NC_020490_p40 hypothetical protein phrog_1058 unknown function unknown function 1 16915 17316
YP_009130721.1 NC_020490_p42 TerS phrog_51 terminase small subunit head and packaging 1 17547 18041
YP_009130726.1 NC_020490_p47 hypothetical protein phrog_12256 unknown function unknown function 1 22466 22615
YP_009130746.1 NC_020490_p67 tail protein phrog_257 minor tail protein tail 1 39489 40535
YP_009130693.1 NC_020490_p14 DNA single-strand binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 6852 7271
YP_009130708.1 NC_020490_p29 hypothetical protein phrog_3683 unknown function unknown function 1 13628 13813
YP_009130753.1 NC_020490_p74 hypothetical protein phrog_7090 unknown function unknown function 1 44192 44596
YP_009130688.1 NC_020490_p9 hypothetical protein phrog_36581 unknown function unknown function 1 5066 5197
YP_009130744.1 NC_020490_p65 peptidoglycan hydrolase phrog_8781 endolysin lysis 1 37304 37543
YP_009130741.1 NC_020490_p62 tail protein phrog_257 minor tail protein tail 1 35427 36383
YP_009130751.1 NC_020490_p72 lysin phrog_489 endolysin lysis 1 42066 43517
YP_009130698.1 NC_020490_p19 helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 9402 10652
YP_009130735.1 NC_020490_p56 tail assembly protein phrog_183 tail chaperone protein tail 1 26801 27166
YP_009130720.1 NC_020490_p41 hypothetical protein singleton unknown function unknown function 1 17313 17528
YP_009130717.1 NC_020490_p38 hypothetical protein phrog_2409 unknown function unknown function 1 16347 16790
YP_009130686.1 NC_020490_p7 hypothetical protein singleton unknown function unknown function 1 4478 4555
YP_009130689.1 NC_020490_p10 hypothetical protein phrog_369 unknown function unknown function 1 5172 5357
YP_009130752.1 NC_020490_p73 hypothetical protein phrog_5881 unknown function unknown function 1 43788 44189
YP_009130745.1 NC_020490_p66 peptidoglycan hydrolase phrog_759 tail associated cell-wall hydrolase other 1 37916 39436
YP_009130683.1 NC_020490_p4 hypothetical protein singleton unknown function unknown function 1 2686 3414
YP_009130736.1 NC_020490_p57 hypothetical protein phrog_441 tail assembly chaperone tail 1 27208 27555
YP_009130709.1 NC_020490_p30 hypothetical protein phrog_98 unknown function unknown function 1 13810 14217
YP_009130712.1 NC_020490_p33 hypothetical protein phrog_38335 unknown function unknown function 1 14862 15107
YP_009130747.1 NC_020490_p68 hypothetical protein phrog_1766 tail fiber protein tail 1 40549 40893
YP_009130722.1 NC_020490_p43 TerL phrog_2 terminase large subunit head and packaging 1 18022 19326
YP_009130742.1 NC_020490_p63 holin phrog_199 holin lysis 1 36405 36896
YP_009130713.1 NC_020490_p34 dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 15108 15653
YP_009130710.1 NC_020490_p31 nuclease phrog_452 endonuclease DNA, RNA and nucleotide metabolism 1 14218 14562
YP_009130730.1 NC_020490_p51 DNA packaging minor head protein phrog_132 head-tail adaptor connector 1 24760 25089
YP_009130718.1 NC_020490_p39 hypothetical protein singleton unknown function unknown function 1 16787 16864
YP_009130724.1 NC_020490_p45 minor head protein phrog_115 minor head protein head and packaging 1 20815 22320
YP_009130704.1 NC_020490_p25 hypothetical protein singleton unknown function unknown function 1 11956 12159
YP_009130743.1 NC_020490_p64 peptidoglycan hydrolase phrog_22714 unknown function unknown function 1 36946 37065
YP_009130702.1 NC_020490_p23 hypothetical protein phrog_467 unknown function unknown function 1 11395 11769
YP_009130711.1 NC_020490_p32 hypothetical protein phrog_4380 unknown function unknown function 1 14567 14869
YP_009130685.1 NC_020490_p6 hypothetical protein phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 3647 4414
YP_009130684.1 NC_020490_p5 hypothetical protein singleton unknown function unknown function 1 3429 3647
YP_009130716.1 NC_020490_p37 RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 16180 16347
YP_009130696.1 NC_020490_p17 replication initiation protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 8259 9053