Genomic map of Synechococcus phage S-RIP2 (NC_020838)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020838
Definition
Synechococcus phage S-RIP2 genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Sednavirus; Synechococcus virus SRIP2.
DB of origin
REFSEQ
Length
45728
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
54
%GC
47.34
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007673153.1 NC_020838_p7 hypothetical protein phrog_36881 unknown function unknown function -1 2577 3173
YP_007673157.1 NC_020838_p11 hypothetical protein phrog_37911 unknown function unknown function -1 12155 14869
YP_007673151.1 NC_020838_p5 hypothetical protein phrog_8716 tail fiber protein tail -1 1486 1833
YP_007673160.1 NC_020838_p14 hypothetical protein phrog_457 tail protein tail -1 16018 18963
YP_007673161.1 NC_020838_p15 tail tubular protein phrog_446 tail protein tail -1 18960 19574
YP_007673192.1 NC_020838_p46 DNA maturase beta subunit phrog_38 terminase large subunit head and packaging -1 41129 42859
YP_007673171.1 NC_020838_p25 hypothetical protein phrog_4970 unknown function unknown function -1 26258 26449
YP_007673187.1 NC_020838_p41 hypothetical protein phrog_33237 unknown function unknown function -1 38595 38843
YP_007673196.1 NC_020838_p50 hypothetical protein phrog_891 terminase small subunit head and packaging -1 44248 44490
YP_007673172.1 NC_020838_p26 hypothetical protein phrog_6799 ribonucleotide reductase class Ia beta subunit DNA, RNA and nucleotide metabolism -1 26418 27134
YP_007673152.1 NC_020838_p6 hypothetical protein phrog_863 tail fiber assembly tail -1 1842 2555
YP_007673148.1 NC_020838_p2 hypothetical protein phrog_9426 unknown function unknown function -1 219 683
YP_007673185.1 NC_020838_p39 hypothetical protein phrog_25680 unknown function unknown function -1 38244 38429
YP_007673180.1 NC_020838_p34 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism -1 34731 37070
YP_007673176.1 NC_020838_p30 hypothetical protein phrog_18637 unknown function unknown function -1 33422 33673
YP_007673197.1 NC_020838_p51 hypothetical protein phrog_1755 unknown function unknown function -1 44471 44860
YP_007673163.1 NC_020838_p17 hypothetical protein singleton unknown function unknown function -1 20955 21194
YP_007673162.1 NC_020838_p16 hypothetical protein phrog_267 major head protein head and packaging -1 19634 20779
YP_007673188.1 NC_020838_p42 hypothetical protein phrog_2543 unknown function unknown function -1 38946 39266
YP_007673174.1 NC_020838_p28 hypothetical protein phrog_671 nucleotide pyrophosphohydrolase other -1 28495 28863
YP_007673199.1 NC_020838_p53 hypothetical protein singleton unknown function unknown function -1 45276 45428
YP_007673182.1 NC_020838_p36 hypothetical protein phrog_9569 unknown function unknown function -1 37198 37518
YP_007673167.1 NC_020838_p21 hypothetical protein phrog_178 high light inducible protein other -1 23363 23560
YP_007673168.1 NC_020838_p22 hypothetical protein phrog_1052 head assembly head and packaging -1 23560 24348
YP_007673175.1 NC_020838_p29 hypothetical protein phrog_18695 unknown function unknown function -1 31732 31923
YP_007673184.1 NC_020838_p38 hypothetical protein phrog_29551 unknown function unknown function -1 37961 38116
YP_007673169.1 NC_020838_p23 head-tail connector protein phrog_449 head-tail adaptor connector -1 24352 25920
YP_007673156.1 NC_020838_p10 hypothetical protein phrog_6651 internal virion protein head and packaging -1 8190 12155
YP_007673195.1 NC_020838_p49 hypothetical protein phrog_6437 unknown function unknown function -1 44004 44261
YP_007673159.1 NC_020838_p13 hypothetical protein phrog_38455 unknown function unknown function -1 15584 16021
YP_007673166.1 NC_020838_p20 hypothetical protein phrog_10346 unknown function unknown function -1 23061 23363
YP_007673173.1 NC_020838_p27 ribonucleotide reductase domain-containing protein phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 27131 28495
YP_007673193.1 NC_020838_p47 hypothetical protein phrog_30827 unknown function unknown function -1 42863 43678
YP_007673170.1 NC_020838_p24 hypothetical protein phrog_31108 unknown function unknown function -1 25920 26255
YP_007673179.1 NC_020838_p33 ssDNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 34165 34737
YP_007673178.1 NC_020838_p32 hypothetical protein phrog_23535 unknown function unknown function -1 33983 34165
YP_007673186.1 NC_020838_p40 hypothetical protein phrog_37659 unknown function unknown function -1 38429 38602
YP_007673183.1 NC_020838_p37 hypothetical protein phrog_30433 unknown function unknown function -1 37638 37856
YP_007673147.1 NC_020838_p1 hypothetical protein phrog_21865 unknown function unknown function -1 1 247
YP_007673177.1 NC_020838_p31 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism -1 33603 33983
YP_007673155.1 NC_020838_p9 hypothetical protein phrog_29288 unknown function unknown function -1 3483 8159
YP_007673191.1 NC_020838_p45 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 40348 41022
YP_007673165.1 NC_020838_p19 hypothetical protein phrog_417 unknown function unknown function -1 22548 23060
YP_007673189.1 NC_020838_p43 hypothetical protein phrog_7365 unknown function unknown function -1 39339 39602
YP_007673194.1 NC_020838_p48 hypothetical protein phrog_2214 HNH endonuclease DNA, RNA and nucleotide metabolism -1 43678 44007
YP_007673158.1 NC_020838_p12 hypothetical protein phrog_29086 unknown function unknown function -1 14886 15602
YP_007673190.1 NC_020838_p44 hypothetical protein phrog_33022 unknown function unknown function -1 40199 40348
YP_007673164.1 NC_020838_p18 photosystem II D1 protein phrog_182 photosystem II D1 moron, auxiliary metabolic gene and host takeover -1 21422 22498
YP_007673181.1 NC_020838_p35 hypothetical protein phrog_38794 unknown function unknown function -1 37071 37280
YP_007673154.1 NC_020838_p8 hypothetical protein phrog_6228 unknown function unknown function -1 3176 3436
YP_007673200.1 NC_020838_p54 hypothetical protein singleton unknown function unknown function -1 45463 45728
YP_007673150.1 NC_020838_p4 hypothetical protein phrog_2738 unknown function unknown function -1 1302 1463
YP_007673198.1 NC_020838_p52 hypothetical protein phrog_650 unknown function unknown function -1 44929 45279
YP_007673149.1 NC_020838_p3 hypothetical protein singleton unknown function unknown function -1 683 1033