| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020838 |
Definition |
Synechococcus phage S-RIP2 genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Sednavirus; Synechococcus virus SRIP2. |
DB of origin |
REFSEQ |
Length |
45728 |
Host Name |
Synechococcus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
47.34 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007673153.1 | NC_020838_p7 | hypothetical protein | phrog_36881 | unknown function | unknown function | -1 | 2577 | 3173 |
| YP_007673157.1 | NC_020838_p11 | hypothetical protein | phrog_37911 | unknown function | unknown function | -1 | 12155 | 14869 |
| YP_007673151.1 | NC_020838_p5 | hypothetical protein | phrog_8716 | tail fiber protein | tail | -1 | 1486 | 1833 |
| YP_007673160.1 | NC_020838_p14 | hypothetical protein | phrog_457 | tail protein | tail | -1 | 16018 | 18963 |
| YP_007673161.1 | NC_020838_p15 | tail tubular protein | phrog_446 | tail protein | tail | -1 | 18960 | 19574 |
| YP_007673192.1 | NC_020838_p46 | DNA maturase beta subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 41129 | 42859 |
| YP_007673171.1 | NC_020838_p25 | hypothetical protein | phrog_4970 | unknown function | unknown function | -1 | 26258 | 26449 |
| YP_007673187.1 | NC_020838_p41 | hypothetical protein | phrog_33237 | unknown function | unknown function | -1 | 38595 | 38843 |
| YP_007673196.1 | NC_020838_p50 | hypothetical protein | phrog_891 | terminase small subunit | head and packaging | -1 | 44248 | 44490 |
| YP_007673172.1 | NC_020838_p26 | hypothetical protein | phrog_6799 | ribonucleotide reductase class Ia beta subunit | DNA, RNA and nucleotide metabolism | -1 | 26418 | 27134 |
| YP_007673152.1 | NC_020838_p6 | hypothetical protein | phrog_863 | tail fiber assembly | tail | -1 | 1842 | 2555 |
| YP_007673148.1 | NC_020838_p2 | hypothetical protein | phrog_9426 | unknown function | unknown function | -1 | 219 | 683 |
| YP_007673185.1 | NC_020838_p39 | hypothetical protein | phrog_25680 | unknown function | unknown function | -1 | 38244 | 38429 |
| YP_007673180.1 | NC_020838_p34 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 34731 | 37070 |
| YP_007673176.1 | NC_020838_p30 | hypothetical protein | phrog_18637 | unknown function | unknown function | -1 | 33422 | 33673 |
| YP_007673197.1 | NC_020838_p51 | hypothetical protein | phrog_1755 | unknown function | unknown function | -1 | 44471 | 44860 |
| YP_007673163.1 | NC_020838_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20955 | 21194 |
| YP_007673162.1 | NC_020838_p16 | hypothetical protein | phrog_267 | major head protein | head and packaging | -1 | 19634 | 20779 |
| YP_007673188.1 | NC_020838_p42 | hypothetical protein | phrog_2543 | unknown function | unknown function | -1 | 38946 | 39266 |
| YP_007673174.1 | NC_020838_p28 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | -1 | 28495 | 28863 |
| YP_007673199.1 | NC_020838_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45276 | 45428 |
| YP_007673182.1 | NC_020838_p36 | hypothetical protein | phrog_9569 | unknown function | unknown function | -1 | 37198 | 37518 |
| YP_007673167.1 | NC_020838_p21 | hypothetical protein | phrog_178 | high light inducible protein | other | -1 | 23363 | 23560 |
| YP_007673168.1 | NC_020838_p22 | hypothetical protein | phrog_1052 | head assembly | head and packaging | -1 | 23560 | 24348 |
| YP_007673175.1 | NC_020838_p29 | hypothetical protein | phrog_18695 | unknown function | unknown function | -1 | 31732 | 31923 |
| YP_007673184.1 | NC_020838_p38 | hypothetical protein | phrog_29551 | unknown function | unknown function | -1 | 37961 | 38116 |
| YP_007673169.1 | NC_020838_p23 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | -1 | 24352 | 25920 |
| YP_007673156.1 | NC_020838_p10 | hypothetical protein | phrog_6651 | internal virion protein | head and packaging | -1 | 8190 | 12155 |
| YP_007673195.1 | NC_020838_p49 | hypothetical protein | phrog_6437 | unknown function | unknown function | -1 | 44004 | 44261 |
| YP_007673159.1 | NC_020838_p13 | hypothetical protein | phrog_38455 | unknown function | unknown function | -1 | 15584 | 16021 |
| YP_007673166.1 | NC_020838_p20 | hypothetical protein | phrog_10346 | unknown function | unknown function | -1 | 23061 | 23363 |
| YP_007673173.1 | NC_020838_p27 | ribonucleotide reductase domain-containing protein | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 27131 | 28495 |
| YP_007673193.1 | NC_020838_p47 | hypothetical protein | phrog_30827 | unknown function | unknown function | -1 | 42863 | 43678 |
| YP_007673170.1 | NC_020838_p24 | hypothetical protein | phrog_31108 | unknown function | unknown function | -1 | 25920 | 26255 |
| YP_007673179.1 | NC_020838_p33 | ssDNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 34165 | 34737 |
| YP_007673178.1 | NC_020838_p32 | hypothetical protein | phrog_23535 | unknown function | unknown function | -1 | 33983 | 34165 |
| YP_007673186.1 | NC_020838_p40 | hypothetical protein | phrog_37659 | unknown function | unknown function | -1 | 38429 | 38602 |
| YP_007673183.1 | NC_020838_p37 | hypothetical protein | phrog_30433 | unknown function | unknown function | -1 | 37638 | 37856 |
| YP_007673147.1 | NC_020838_p1 | hypothetical protein | phrog_21865 | unknown function | unknown function | -1 | 1 | 247 |
| YP_007673177.1 | NC_020838_p31 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33603 | 33983 |
| YP_007673155.1 | NC_020838_p9 | hypothetical protein | phrog_29288 | unknown function | unknown function | -1 | 3483 | 8159 |
| YP_007673191.1 | NC_020838_p45 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 40348 | 41022 |
| YP_007673165.1 | NC_020838_p19 | hypothetical protein | phrog_417 | unknown function | unknown function | -1 | 22548 | 23060 |
| YP_007673189.1 | NC_020838_p43 | hypothetical protein | phrog_7365 | unknown function | unknown function | -1 | 39339 | 39602 |
| YP_007673194.1 | NC_020838_p48 | hypothetical protein | phrog_2214 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 43678 | 44007 |
| YP_007673158.1 | NC_020838_p12 | hypothetical protein | phrog_29086 | unknown function | unknown function | -1 | 14886 | 15602 |
| YP_007673190.1 | NC_020838_p44 | hypothetical protein | phrog_33022 | unknown function | unknown function | -1 | 40199 | 40348 |
| YP_007673164.1 | NC_020838_p18 | photosystem II D1 protein | phrog_182 | photosystem II D1 | moron, auxiliary metabolic gene and host takeover | -1 | 21422 | 22498 |
| YP_007673181.1 | NC_020838_p35 | hypothetical protein | phrog_38794 | unknown function | unknown function | -1 | 37071 | 37280 |
| YP_007673154.1 | NC_020838_p8 | hypothetical protein | phrog_6228 | unknown function | unknown function | -1 | 3176 | 3436 |
| YP_007673200.1 | NC_020838_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45463 | 45728 |
| YP_007673150.1 | NC_020838_p4 | hypothetical protein | phrog_2738 | unknown function | unknown function | -1 | 1302 | 1463 |
| YP_007673198.1 | NC_020838_p52 | hypothetical protein | phrog_650 | unknown function | unknown function | -1 | 44929 | 45279 |
| YP_007673149.1 | NC_020838_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 683 | 1033 |