| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020839 |
Definition |
Rhodobacter phage RC1 genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
39573 |
Host Name |
Rhodobacter sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
62.27 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007673208.1 | NC_020839_p8 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | -1 | 10678 | 11022 |
| YP_007673213.1 | NC_020839_p13 | hypothetical protein | phrog_38659 | unknown function | unknown function | -1 | 13367 | 13837 |
| YP_007673241.1 | NC_020839_p41 | hypothetical protein | phrog_28202 | unknown function | unknown function | -1 | 31438 | 31632 |
| YP_007673256.1 | NC_020839_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39384 | 39563 |
| YP_007673246.1 | NC_020839_p46 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | -1 | 33240 | 33896 |
| YP_007673220.1 | NC_020839_p20 | hypothetical protein | phrog_26 | tail completion or Neck1 protein | connector | -1 | 18297 | 18806 |
| YP_007673224.1 | NC_020839_p24 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | -1 | 22115 | 23812 |
| YP_007673205.1 | NC_020839_p5 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 6035 | 6562 |
| YP_007673216.1 | NC_020839_p16 | I protein | phrog_328 | head maturation protease | head and packaging | -1 | 15192 | 16229 |
| YP_007673247.1 | NC_020839_p47 | hypothetical protein | phrog_296 | DNA transposition protein | integration and excision | -1 | 33839 | 34579 |
| YP_007673229.1 | NC_020839_p29 | hypothetical protein | phrog_873 | endolysin | head and packaging | -1 | 25679 | 26191 |
| YP_007673249.1 | NC_020839_p49 | hypothetical protein | phrog_27611 | unknown function | unknown function | -1 | 36783 | 37037 |
| YP_007673211.1 | NC_020839_p11 | hypothetical protein | phrog_209 | portal protein | head and packaging | -1 | 12451 | 12885 |
| YP_007673204.1 | NC_020839_p4 | tail assembly protein | phrog_329 | minor tail protein | tail | -1 | 5595 | 6038 |
| YP_007673243.1 | NC_020839_p43 | hypothetical protein | phrog_31202 | unknown function | unknown function | -1 | 31870 | 32397 |
| YP_007673230.1 | NC_020839_p30 | hypothetical protein | phrog_7 | endolysin | lysis | -1 | 26193 | 27098 |
| YP_007673239.1 | NC_020839_p39 | DNA-binding protein HU | phrog_379 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30461 | 30727 |
| YP_007673231.1 | NC_020839_p31 | hypothetical protein | phrog_836 | late transcriptional activator | transcription regulation | -1 | 27202 | 27576 |
| YP_007673215.1 | NC_020839_p15 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | -1 | 14761 | 15195 |
| YP_007673248.1 | NC_020839_p48 | integrase | phrog_310 | transposase | integration and excision | -1 | 34639 | 36756 |
| YP_007673222.1 | NC_020839_p22 | hypothetical protein | phrog_113 | portal protein | head and packaging | -1 | 20152 | 21795 |
| YP_007673252.1 | NC_020839_p52 | hypothetical protein | phrog_22979 | unknown function | unknown function | -1 | 37572 | 37823 |
| YP_007673212.1 | NC_020839_p12 | hypothetical protein | phrog_195 | head-tail adaptor | connector | -1 | 12885 | 13313 |
| YP_007673206.1 | NC_020839_p6 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 6559 | 6981 |
| YP_007673214.1 | NC_020839_p14 | major head subunit | phrog_371 | major head protein | head and packaging | -1 | 13856 | 14749 |
| YP_007673250.1 | NC_020839_p50 | hypothetical protein | phrog_13335 | unknown function | unknown function | -1 | 37047 | 37313 |
| YP_007673202.1 | NC_020839_p2 | hypothetical protein | phrog_29482 | unknown function | unknown function | -1 | 813 | 2246 |
| YP_007673240.1 | NC_020839_p40 | hypothetical protein | phrog_846 | unknown function | unknown function | -1 | 30786 | 31436 |
| YP_007673235.1 | NC_020839_p35 | hypothetical protein | phrog_286 | unknown function | unknown function | -1 | 28672 | 29292 |
| YP_007673210.1 | NC_020839_p10 | hypothetical protein | phrog_290 | minor tail protein | tail | -1 | 11362 | 12300 |
| YP_007673238.1 | NC_020839_p38 | hypothetical protein | phrog_23215 | unknown function | unknown function | -1 | 29752 | 30411 |
| YP_007673242.1 | NC_020839_p42 | hypothetical protein | phrog_19497 | unknown function | unknown function | -1 | 31629 | 31877 |
| YP_007673237.1 | NC_020839_p37 | hypothetical protein | phrog_34056 | unknown function | unknown function | -1 | 29513 | 29740 |
| YP_007673221.1 | NC_020839_p21 | hypothetical protein | phrog_220 | minor head protein and DNA pilot | head and packaging | -1 | 18873 | 20159 |
| YP_007673244.1 | NC_020839_p44 | hypothetical protein | phrog_34198 | unknown function | unknown function | -1 | 32330 | 32872 |
| YP_007673201.1 | NC_020839_p1 | hypothetical protein | phrog_4912 | tail fiber assembly | tail | -1 | 523 | 825 |
| YP_007673219.1 | NC_020839_p19 | hypothetical protein | phrog_1281 | unknown function | unknown function | -1 | 17609 | 18097 |
| YP_007673253.1 | NC_020839_p53 | hypothetical protein | phrog_7669 | unknown function | unknown function | -1 | 37823 | 38083 |
| YP_007673232.1 | NC_020839_p32 | MT-A70 family protein | phrog_359 | DNA methyltransferase | other | -1 | 27573 | 28178 |
| YP_007673218.1 | NC_020839_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16877 | 17206 |
| YP_007673227.1 | NC_020839_p27 | hypothetical protein | phrog_436 | unknown function | unknown function | -1 | 24979 | 25284 |
| YP_007673203.1 | NC_020839_p3 | tail fiber protein | phrog_31 | central tail fiber J | tail | -1 | 2254 | 5511 |
| YP_007673226.1 | NC_020839_p26 | hypothetical protein | phrog_426 | terminase small subunit | head and packaging | -1 | 24387 | 24977 |
| YP_007673236.1 | NC_020839_p36 | hypothetical protein | phrog_22210 | unknown function | unknown function | -1 | 29298 | 29513 |
| YP_007673255.1 | NC_020839_p55 | hypothetical protein | phrog_15412 | unknown function | unknown function | 1 | 38897 | 39382 |
| YP_007673254.1 | NC_020839_p54 | phage repressor | phrog_4 | transcriptional repressor | transcription regulation | 1 | 38187 | 38879 |
| YP_007673223.1 | NC_020839_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21795 | 22115 |
| YP_007673228.1 | NC_020839_p28 | hypothetical protein | phrog_736 | unknown function | unknown function | -1 | 25281 | 25682 |
| YP_007673209.1 | NC_020839_p9 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | -1 | 11019 | 11351 |
| YP_007673251.1 | NC_020839_p51 | hypothetical protein | phrog_38010 | unknown function | unknown function | -1 | 37303 | 37566 |
| YP_007673225.1 | NC_020839_p25 | hypothetical protein | phrog_1244 | unknown function | unknown function | 1 | 23893 | 24363 |
| YP_007673245.1 | NC_020839_p45 | hypothetical protein | phrog_2119 | unknown function | unknown function | -1 | 32872 | 33243 |
| YP_007673207.1 | NC_020839_p7 | hypothetical protein | phrog_19487 | tail length tape measure protein | tail | -1 | 6978 | 10673 |
| YP_007673234.1 | NC_020839_p34 | hypothetical protein | phrog_29579 | unknown function | unknown function | -1 | 28448 | 28675 |
| YP_007673217.1 | NC_020839_p17 | hypothetical protein | phrog_28910 | unknown function | unknown function | 1 | 16425 | 16829 |
| YP_007673233.1 | NC_020839_p33 | hypothetical protein | phrog_8252 | unknown function | unknown function | -1 | 28171 | 28458 |