Genomic map of Rhodobacter phage RC1 (NC_020839)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020839
Definition
Rhodobacter phage RC1 genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
39573
Host Name
Rhodobacter sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
62.27
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007673208.1 NC_020839_p8 hypothetical protein phrog_680 tail length tape measure protein tail -1 10678 11022
YP_007673213.1 NC_020839_p13 hypothetical protein phrog_38659 unknown function unknown function -1 13367 13837
YP_007673241.1 NC_020839_p41 hypothetical protein phrog_28202 unknown function unknown function -1 31438 31632
YP_007673256.1 NC_020839_p56 hypothetical protein singleton unknown function unknown function -1 39384 39563
YP_007673246.1 NC_020839_p46 hypothetical protein phrog_2030 transcriptional regulator transcription regulation -1 33240 33896
YP_007673220.1 NC_020839_p20 hypothetical protein phrog_26 tail completion or Neck1 protein connector -1 18297 18806
YP_007673224.1 NC_020839_p24 hypothetical protein phrog_2 terminase large subunit head and packaging -1 22115 23812
YP_007673205.1 NC_020839_p5 hypothetical protein phrog_396 minor tail protein tail -1 6035 6562
YP_007673216.1 NC_020839_p16 I protein phrog_328 head maturation protease head and packaging -1 15192 16229
YP_007673247.1 NC_020839_p47 hypothetical protein phrog_296 DNA transposition protein integration and excision -1 33839 34579
YP_007673229.1 NC_020839_p29 hypothetical protein phrog_873 endolysin head and packaging -1 25679 26191
YP_007673249.1 NC_020839_p49 hypothetical protein phrog_27611 unknown function unknown function -1 36783 37037
YP_007673211.1 NC_020839_p11 hypothetical protein phrog_209 portal protein head and packaging -1 12451 12885
YP_007673204.1 NC_020839_p4 tail assembly protein phrog_329 minor tail protein tail -1 5595 6038
YP_007673243.1 NC_020839_p43 hypothetical protein phrog_31202 unknown function unknown function -1 31870 32397
YP_007673230.1 NC_020839_p30 hypothetical protein phrog_7 endolysin lysis -1 26193 27098
YP_007673239.1 NC_020839_p39 DNA-binding protein HU phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism -1 30461 30727
YP_007673231.1 NC_020839_p31 hypothetical protein phrog_836 late transcriptional activator transcription regulation -1 27202 27576
YP_007673215.1 NC_020839_p15 hypothetical protein phrog_1731 virion structural protein head and packaging -1 14761 15195
YP_007673248.1 NC_020839_p48 integrase phrog_310 transposase integration and excision -1 34639 36756
YP_007673222.1 NC_020839_p22 hypothetical protein phrog_113 portal protein head and packaging -1 20152 21795
YP_007673252.1 NC_020839_p52 hypothetical protein phrog_22979 unknown function unknown function -1 37572 37823
YP_007673212.1 NC_020839_p12 hypothetical protein phrog_195 head-tail adaptor connector -1 12885 13313
YP_007673206.1 NC_020839_p6 hypothetical protein phrog_384 virion structural protein head and packaging -1 6559 6981
YP_007673214.1 NC_020839_p14 major head subunit phrog_371 major head protein head and packaging -1 13856 14749
YP_007673250.1 NC_020839_p50 hypothetical protein phrog_13335 unknown function unknown function -1 37047 37313
YP_007673202.1 NC_020839_p2 hypothetical protein phrog_29482 unknown function unknown function -1 813 2246
YP_007673240.1 NC_020839_p40 hypothetical protein phrog_846 unknown function unknown function -1 30786 31436
YP_007673235.1 NC_020839_p35 hypothetical protein phrog_286 unknown function unknown function -1 28672 29292
YP_007673210.1 NC_020839_p10 hypothetical protein phrog_290 minor tail protein tail -1 11362 12300
YP_007673238.1 NC_020839_p38 hypothetical protein phrog_23215 unknown function unknown function -1 29752 30411
YP_007673242.1 NC_020839_p42 hypothetical protein phrog_19497 unknown function unknown function -1 31629 31877
YP_007673237.1 NC_020839_p37 hypothetical protein phrog_34056 unknown function unknown function -1 29513 29740
YP_007673221.1 NC_020839_p21 hypothetical protein phrog_220 minor head protein and DNA pilot head and packaging -1 18873 20159
YP_007673244.1 NC_020839_p44 hypothetical protein phrog_34198 unknown function unknown function -1 32330 32872
YP_007673201.1 NC_020839_p1 hypothetical protein phrog_4912 tail fiber assembly tail -1 523 825
YP_007673219.1 NC_020839_p19 hypothetical protein phrog_1281 unknown function unknown function -1 17609 18097
YP_007673253.1 NC_020839_p53 hypothetical protein phrog_7669 unknown function unknown function -1 37823 38083
YP_007673232.1 NC_020839_p32 MT-A70 family protein phrog_359 DNA methyltransferase other -1 27573 28178
YP_007673218.1 NC_020839_p18 hypothetical protein singleton unknown function unknown function -1 16877 17206
YP_007673227.1 NC_020839_p27 hypothetical protein phrog_436 unknown function unknown function -1 24979 25284
YP_007673203.1 NC_020839_p3 tail fiber protein phrog_31 central tail fiber J tail -1 2254 5511
YP_007673226.1 NC_020839_p26 hypothetical protein phrog_426 terminase small subunit head and packaging -1 24387 24977
YP_007673236.1 NC_020839_p36 hypothetical protein phrog_22210 unknown function unknown function -1 29298 29513
YP_007673255.1 NC_020839_p55 hypothetical protein phrog_15412 unknown function unknown function 1 38897 39382
YP_007673254.1 NC_020839_p54 phage repressor phrog_4 transcriptional repressor transcription regulation 1 38187 38879
YP_007673223.1 NC_020839_p23 hypothetical protein singleton unknown function unknown function -1 21795 22115
YP_007673228.1 NC_020839_p28 hypothetical protein phrog_736 unknown function unknown function -1 25281 25682
YP_007673209.1 NC_020839_p9 hypothetical protein phrog_569 tail length tape measure protein tail -1 11019 11351
YP_007673251.1 NC_020839_p51 hypothetical protein phrog_38010 unknown function unknown function -1 37303 37566
YP_007673225.1 NC_020839_p25 hypothetical protein phrog_1244 unknown function unknown function 1 23893 24363
YP_007673245.1 NC_020839_p45 hypothetical protein phrog_2119 unknown function unknown function -1 32872 33243
YP_007673207.1 NC_020839_p7 hypothetical protein phrog_19487 tail length tape measure protein tail -1 6978 10673
YP_007673234.1 NC_020839_p34 hypothetical protein phrog_29579 unknown function unknown function -1 28448 28675
YP_007673217.1 NC_020839_p17 hypothetical protein phrog_28910 unknown function unknown function 1 16425 16829
YP_007673233.1 NC_020839_p33 hypothetical protein phrog_8252 unknown function unknown function -1 28171 28458