| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020844 |
Definition |
Salicola phage CGphi29 genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
40695 |
Host Name |
Salicola |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
64 |
%GC |
56.42 |
Number of singletons |
32 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007673720.1 | NC_020844_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28829 | 29641 |
| YP_007673719.1 | NC_020844_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27137 | 28825 |
| YP_007673716.1 | NC_020844_p34 | hypothetical protein | phrog_18915 | unknown function | unknown function | 1 | 21500 | 21928 |
| YP_007673729.1 | NC_020844_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33199 | 33462 |
| YP_007673690.1 | NC_020844_p8 | hypothetical protein | phrog_409 | transcriptional regulator | transcription regulation | 1 | 4954 | 5139 |
| YP_007673702.1 | NC_020844_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15822 | 16001 |
| YP_007673691.1 | NC_020844_p9 | hypothetical protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 5132 | 7126 |
| YP_007673743.1 | NC_020844_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38350 | 38640 |
| YP_007673734.1 | NC_020844_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35279 | 35440 |
| YP_007673740.1 | NC_020844_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36929 | 37480 |
| YP_007673694.1 | NC_020844_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7892 | 8239 |
| YP_007673709.1 | NC_020844_p27 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 18734 | 19129 |
| YP_007673701.1 | NC_020844_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15290 | 15490 |
| YP_007673722.1 | NC_020844_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30723 | 31124 |
| YP_007673711.1 | NC_020844_p29 | hypothetical protein | phrog_2315 | unknown function | unknown function | 1 | 19479 | 19772 |
| YP_007673717.1 | NC_020844_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21984 | 26240 |
| YP_007673715.1 | NC_020844_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21057 | 21473 |
| YP_007673737.1 | NC_020844_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36011 | 36223 |
| YP_007673744.1 | NC_020844_p62 | hypothetical protein | phrog_1273 | unknown function | unknown function | -1 | 38640 | 38978 |
| YP_007673695.1 | NC_020844_p13 | hypothetical protein | phrog_309 | terminase small subunit | head and packaging | 1 | 9047 | 9448 |
| YP_007673693.1 | NC_020844_p11 | hypothetical protein | phrog_751 | unknown function | unknown function | 1 | 7764 | 7937 |
| YP_007673699.1 | NC_020844_p17 | hypothetical protein | phrog_283 | major head protein | head and packaging | 1 | 13033 | 14187 |
| YP_007673692.1 | NC_020844_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7369 | 7668 |
| YP_007673741.1 | NC_020844_p59 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 37490 | 37672 |
| YP_007673704.1 | NC_020844_p22 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 16483 | 16845 |
| YP_007673687.1 | NC_020844_p5 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 3498 | 3893 |
| YP_007673723.1 | NC_020844_p41 | hypothetical protein | phrog_3342 | unknown function | unknown function | 1 | 31136 | 31387 |
| YP_007673714.1 | NC_020844_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20616 | 20963 |
| YP_007673721.1 | NC_020844_p39 | hypothetical protein | phrog_2889 | unknown function | unknown function | 1 | 29644 | 30711 |
| YP_007673712.1 | NC_020844_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19754 | 19963 |
| YP_007673705.1 | NC_020844_p23 | hypothetical protein | phrog_3517 | head morphogenesis | head and packaging | 1 | 16849 | 17880 |
| YP_007673706.1 | NC_020844_p24 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 17822 | 18292 |
| YP_007673713.1 | NC_020844_p31 | hypothetical protein | phrog_158 | major tail protein | tail | 1 | 20147 | 20602 |
| YP_007673746.1 | NC_020844_p64 | hypothetical protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 39513 | 40691 |
| YP_007673731.1 | NC_020844_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33674 | 34516 |
| YP_007673703.1 | NC_020844_p21 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 15977 | 16483 |
| YP_007673684.1 | NC_020844_p2 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 934 | 1881 |
| YP_007673730.1 | NC_020844_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33459 | 33674 |
| YP_007673736.1 | NC_020844_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35804 | 36007 |
| YP_007673688.1 | NC_020844_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3893 | 4156 |
| YP_007673724.1 | NC_020844_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31544 | 32107 |
| YP_007673685.1 | NC_020844_p3 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 1968 | 2954 |
| YP_007673697.1 | NC_020844_p15 | hypothetical protein | phrog_145 | portal protein | head and packaging | 1 | 10772 | 12139 |
| YP_007673689.1 | NC_020844_p7 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 4153 | 4827 |
| YP_007673683.1 | NC_020844_p1 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 1 | 934 |
| YP_007673745.1 | NC_020844_p63 | hypothetical protein | phrog_824 | unknown function | unknown function | -1 | 39049 | 39471 |
| YP_007673725.1 | NC_020844_p43 | hypothetical protein | phrog_9685 | unknown function | unknown function | 1 | 32326 | 32514 |
| YP_007673742.1 | NC_020844_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37665 | 38360 |
| YP_007673728.1 | NC_020844_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32926 | 33105 |
| YP_007673738.1 | NC_020844_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36220 | 36678 |
| YP_007673739.1 | NC_020844_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36675 | 36932 |
| YP_007673732.1 | NC_020844_p50 | hypothetical protein | phrog_6858 | unknown function | unknown function | -1 | 34547 | 34978 |
| YP_007673726.1 | NC_020844_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32504 | 32719 |
| YP_007673718.1 | NC_020844_p36 | hypothetical protein | phrog_6278 | unknown function | unknown function | 1 | 26237 | 27136 |
| YP_007673698.1 | NC_020844_p16 | hypothetical protein | phrog_784 | unknown function | unknown function | 1 | 12180 | 12926 |
| YP_007673707.1 | NC_020844_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18289 | 18516 |
| YP_007673696.1 | NC_020844_p14 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 9423 | 10772 |
| YP_007673727.1 | NC_020844_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32649 | 32819 |
| YP_007673700.1 | NC_020844_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14395 | 15324 |
| YP_007673708.1 | NC_020844_p26 | hypothetical protein | phrog_3540 | unknown function | unknown function | 1 | 18513 | 18737 |
| YP_007673735.1 | NC_020844_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35488 | 35694 |
| YP_007673710.1 | NC_020844_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19183 | 19482 |
| YP_007673733.1 | NC_020844_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34959 | 35282 |
| YP_007673686.1 | NC_020844_p4 | hypothetical protein | phrog_2300 | unknown function | unknown function | -1 | 2998 | 3495 |