Genomic map of Salicola phage CGphi29 (NC_020844)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020844
Definition
Salicola phage CGphi29 genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40695
Host Name
Salicola
Host domain
Bacteria
Is prophage?
undef
Number of proteins
64
%GC
56.42
Number of singletons
32
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007673720.1 NC_020844_p38 hypothetical protein singleton unknown function unknown function 1 28829 29641
YP_007673719.1 NC_020844_p37 hypothetical protein singleton unknown function unknown function 1 27137 28825
YP_007673716.1 NC_020844_p34 hypothetical protein phrog_18915 unknown function unknown function 1 21500 21928
YP_007673729.1 NC_020844_p47 hypothetical protein singleton unknown function unknown function -1 33199 33462
YP_007673690.1 NC_020844_p8 hypothetical protein phrog_409 transcriptional regulator transcription regulation 1 4954 5139
YP_007673702.1 NC_020844_p20 hypothetical protein singleton unknown function unknown function 1 15822 16001
YP_007673691.1 NC_020844_p9 hypothetical protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 5132 7126
YP_007673743.1 NC_020844_p61 hypothetical protein singleton unknown function unknown function -1 38350 38640
YP_007673734.1 NC_020844_p52 hypothetical protein singleton unknown function unknown function -1 35279 35440
YP_007673740.1 NC_020844_p58 hypothetical protein singleton unknown function unknown function -1 36929 37480
YP_007673694.1 NC_020844_p12 hypothetical protein singleton unknown function unknown function 1 7892 8239
YP_007673709.1 NC_020844_p27 hypothetical protein phrog_179 tail terminator connector 1 18734 19129
YP_007673701.1 NC_020844_p19 hypothetical protein singleton unknown function unknown function 1 15290 15490
YP_007673722.1 NC_020844_p40 hypothetical protein singleton unknown function unknown function 1 30723 31124
YP_007673711.1 NC_020844_p29 hypothetical protein phrog_2315 unknown function unknown function 1 19479 19772
YP_007673717.1 NC_020844_p35 hypothetical protein singleton unknown function unknown function 1 21984 26240
YP_007673715.1 NC_020844_p33 hypothetical protein singleton unknown function unknown function 1 21057 21473
YP_007673737.1 NC_020844_p55 hypothetical protein singleton unknown function unknown function -1 36011 36223
YP_007673744.1 NC_020844_p62 hypothetical protein phrog_1273 unknown function unknown function -1 38640 38978
YP_007673695.1 NC_020844_p13 hypothetical protein phrog_309 terminase small subunit head and packaging 1 9047 9448
YP_007673693.1 NC_020844_p11 hypothetical protein phrog_751 unknown function unknown function 1 7764 7937
YP_007673699.1 NC_020844_p17 hypothetical protein phrog_283 major head protein head and packaging 1 13033 14187
YP_007673692.1 NC_020844_p10 hypothetical protein singleton unknown function unknown function 1 7369 7668
YP_007673741.1 NC_020844_p59 hypothetical protein phrog_54 DksA-like zinc-finger protein other -1 37490 37672
YP_007673704.1 NC_020844_p22 hypothetical protein phrog_161 head closure Hc1 connector 1 16483 16845
YP_007673687.1 NC_020844_p5 hypothetical protein phrog_2480 unknown function unknown function -1 3498 3893
YP_007673723.1 NC_020844_p41 hypothetical protein phrog_3342 unknown function unknown function 1 31136 31387
YP_007673714.1 NC_020844_p32 hypothetical protein singleton unknown function unknown function 1 20616 20963
YP_007673721.1 NC_020844_p39 hypothetical protein phrog_2889 unknown function unknown function 1 29644 30711
YP_007673712.1 NC_020844_p30 hypothetical protein singleton unknown function unknown function 1 19754 19963
YP_007673705.1 NC_020844_p23 hypothetical protein phrog_3517 head morphogenesis head and packaging 1 16849 17880
YP_007673706.1 NC_020844_p24 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 17822 18292
YP_007673713.1 NC_020844_p31 hypothetical protein phrog_158 major tail protein tail 1 20147 20602
YP_007673746.1 NC_020844_p64 hypothetical protein phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 39513 40691
YP_007673731.1 NC_020844_p49 hypothetical protein singleton unknown function unknown function -1 33674 34516
YP_007673703.1 NC_020844_p21 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 15977 16483
YP_007673684.1 NC_020844_p2 hypothetical protein phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 934 1881
YP_007673730.1 NC_020844_p48 hypothetical protein singleton unknown function unknown function -1 33459 33674
YP_007673736.1 NC_020844_p54 hypothetical protein singleton unknown function unknown function -1 35804 36007
YP_007673688.1 NC_020844_p6 hypothetical protein singleton unknown function unknown function -1 3893 4156
YP_007673724.1 NC_020844_p42 hypothetical protein singleton unknown function unknown function 1 31544 32107
YP_007673685.1 NC_020844_p3 DNA methylase phrog_67 DNA methyltransferase other -1 1968 2954
YP_007673697.1 NC_020844_p15 hypothetical protein phrog_145 portal protein head and packaging 1 10772 12139
YP_007673689.1 NC_020844_p7 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 4153 4827
YP_007673683.1 NC_020844_p1 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 1 934
YP_007673745.1 NC_020844_p63 hypothetical protein phrog_824 unknown function unknown function -1 39049 39471
YP_007673725.1 NC_020844_p43 hypothetical protein phrog_9685 unknown function unknown function 1 32326 32514
YP_007673742.1 NC_020844_p60 hypothetical protein singleton unknown function unknown function -1 37665 38360
YP_007673728.1 NC_020844_p46 hypothetical protein singleton unknown function unknown function -1 32926 33105
YP_007673738.1 NC_020844_p56 hypothetical protein singleton unknown function unknown function -1 36220 36678
YP_007673739.1 NC_020844_p57 hypothetical protein singleton unknown function unknown function -1 36675 36932
YP_007673732.1 NC_020844_p50 hypothetical protein phrog_6858 unknown function unknown function -1 34547 34978
YP_007673726.1 NC_020844_p44 hypothetical protein singleton unknown function unknown function 1 32504 32719
YP_007673718.1 NC_020844_p36 hypothetical protein phrog_6278 unknown function unknown function 1 26237 27136
YP_007673698.1 NC_020844_p16 hypothetical protein phrog_784 unknown function unknown function 1 12180 12926
YP_007673707.1 NC_020844_p25 hypothetical protein singleton unknown function unknown function 1 18289 18516
YP_007673696.1 NC_020844_p14 terminase large subunit phrog_2 terminase large subunit head and packaging 1 9423 10772
YP_007673727.1 NC_020844_p45 hypothetical protein singleton unknown function unknown function 1 32649 32819
YP_007673700.1 NC_020844_p18 hypothetical protein singleton unknown function unknown function 1 14395 15324
YP_007673708.1 NC_020844_p26 hypothetical protein phrog_3540 unknown function unknown function 1 18513 18737
YP_007673735.1 NC_020844_p53 hypothetical protein singleton unknown function unknown function -1 35488 35694
YP_007673710.1 NC_020844_p28 hypothetical protein singleton unknown function unknown function 1 19183 19482
YP_007673733.1 NC_020844_p51 hypothetical protein singleton unknown function unknown function -1 34959 35282
YP_007673686.1 NC_020844_p4 hypothetical protein phrog_2300 unknown function unknown function -1 2998 3495