Genomic map of Vibrio phage pYD21-A (NC_020846)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020846
Definition
Vibrio phage pYD21-A genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
46917
Host Name
Vibrio sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
74
%GC
43.89
Number of singletons
30
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007673978.1 NC_020846_p16 hypothetical protein phrog_19680 unknown function unknown function 1 8024 8524
YP_007673977.1 NC_020846_p15 hypothetical protein phrog_1275 Rz-like spanin lysis 1 7747 7959
YP_007673964.1 NC_020846_p2 hypothetical protein singleton unknown function unknown function -1 558 707
YP_007673986.1 NC_020846_p24 hypothetical protein phrog_766 head decoration head and packaging 1 16305 16727
YP_007673973.1 NC_020846_p11 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6425 6970
YP_007673997.1 NC_020846_p35 hypothetical protein phrog_774 unknown function unknown function -1 21613 21813
YP_007673996.1 NC_020846_p34 hypothetical protein singleton unknown function unknown function 1 21217 21564
YP_007673967.1 NC_020846_p5 hypothetical protein singleton unknown function unknown function 1 2420 2644
YP_007673990.1 NC_020846_p28 hypothetical protein singleton unknown function unknown function -1 18741 18971
YP_007674013.1 NC_020846_p51 hypothetical protein phrog_852 unknown function unknown function -1 31736 31963
YP_007674010.1 NC_020846_p48 hypothetical protein singleton unknown function unknown function -1 30906 31079
YP_007673998.1 NC_020846_p36 hypothetical protein phrog_791 unknown function unknown function 1 21926 22522
YP_007673981.1 NC_020846_p19 hypothetical protein phrog_7121 tail fiber protein tail 1 10923 12962
YP_007673963.1 NC_020846_p1 hypothetical protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism -1 1 472
YP_007673972.1 NC_020846_p10 hypothetical protein phrog_758 head morphogenesis head and packaging 1 5329 6207
YP_007674004.1 NC_020846_p42 hypothetical protein phrog_24622 unknown function unknown function -1 29450 29665
YP_007674035.1 NC_020846_p73 hypothetical protein singleton unknown function unknown function -1 45900 46259
YP_007673988.1 NC_020846_p26 hypothetical protein phrog_4770 unknown function unknown function 1 17824 18099
YP_007673982.1 NC_020846_p20 hypothetical protein singleton unknown function unknown function 1 12949 14265
YP_007674003.1 NC_020846_p41 hypothetical protein phrog_469 tail protein tail 1 26192 29425
YP_007674026.1 NC_020846_p64 hypothetical protein singleton unknown function unknown function 1 40861 41256
YP_007674022.1 NC_020846_p60 hypothetical protein phrog_2201 unknown function unknown function 1 39724 39960
YP_007674005.1 NC_020846_p43 hypothetical protein singleton unknown function unknown function -1 29665 29931
YP_007673987.1 NC_020846_p25 hypothetical protein phrog_771 virion structural protein head and packaging 1 16729 17754
YP_007674029.1 NC_020846_p67 hypothetical protein phrog_51 terminase small subunit head and packaging 1 42293 42685
YP_007674011.1 NC_020846_p49 hypothetical protein singleton unknown function unknown function -1 31082 31444
YP_007673999.1 NC_020846_p37 hypothetical protein phrog_1538 tail length tape measure protein tail 1 22522 24843
YP_007674008.1 NC_020846_p46 hypothetical protein singleton unknown function unknown function 1 30520 30744
YP_007673992.1 NC_020846_p30 hypothetical protein singleton unknown function unknown function 1 19467 19829
YP_007674001.1 NC_020846_p39 hypothetical protein phrog_396 minor tail protein tail 1 25322 25807
YP_007673974.1 NC_020846_p12 hypothetical protein phrog_1768 endolysin lysis 1 6967 7305
YP_007674034.1 NC_020846_p72 hypothetical protein singleton unknown function unknown function -1 45656 45919
YP_007673970.1 NC_020846_p8 hypothetical protein singleton unknown function unknown function 1 4311 4478
YP_007673968.1 NC_020846_p6 hypothetical protein singleton unknown function unknown function 1 2641 2805
YP_007674021.1 NC_020846_p59 hypothetical protein singleton unknown function unknown function 1 39463 39621
YP_007673984.1 NC_020846_p22 hypothetical protein singleton unknown function unknown function -1 14644 15117
YP_007673985.1 NC_020846_p23 hypothetical protein phrog_760 unknown function unknown function 1 15184 16302
YP_007674009.1 NC_020846_p47 hypothetical protein phrog_409 transcriptional regulator transcription regulation -1 30757 30909
YP_007674033.1 NC_020846_p71 hypothetical protein singleton unknown function unknown function -1 45201 45581
YP_007674027.1 NC_020846_p65 hypothetical protein phrog_16568 Ren-like exclusion protein moron, auxiliary metabolic gene and host takeover 1 41259 41615
YP_007673995.1 NC_020846_p33 hypothetical protein phrog_1407 major tail protein tail 1 20717 21217
YP_007674020.1 NC_020846_p58 hypothetical protein singleton unknown function unknown function -1 38729 39010
YP_007673975.1 NC_020846_p13 hypothetical protein singleton unknown function unknown function 1 7379 7564
YP_007673991.1 NC_020846_p29 hypothetical protein singleton unknown function unknown function 1 19078 19467
YP_007674014.1 NC_020846_p52 hypothetical protein phrog_824 unknown function unknown function -1 31950 32330
YP_007674031.1 NC_020846_p69 hypothetical protein singleton unknown function unknown function -1 44110 44562
YP_007674036.1 NC_020846_p74 hypothetical protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism -1 46225 46899
YP_007673965.1 NC_020846_p3 hypothetical protein phrog_25039 unknown function unknown function -1 814 1155
YP_007673979.1 NC_020846_p17 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 8524 9705
YP_007674028.1 NC_020846_p66 hypothetical protein phrog_24216 unknown function unknown function 1 41672 42235
YP_007673980.1 NC_020846_p18 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 9653 10045
YP_007674000.1 NC_020846_p38 hypothetical protein phrog_384 virion structural protein head and packaging 1 24843 25325
YP_007674023.1 NC_020846_p61 hypothetical protein singleton unknown function unknown function 1 39962 40276
YP_007674024.1 NC_020846_p62 hypothetical protein singleton unknown function unknown function 1 40279 40497
YP_007674012.1 NC_020846_p50 hypothetical protein singleton unknown function unknown function -1 31447 31641
YP_007674007.1 NC_020846_p45 hypothetical protein singleton unknown function unknown function -1 30140 30433
YP_007673971.1 NC_020846_p9 serine/threonine-protein phosphatase 1 phrog_246 NinI-like serine-threonine phosphatase other 1 4475 5137
YP_007673969.1 NC_020846_p7 hypothetical protein phrog_146 portal protein head and packaging 1 2948 4333
YP_007674030.1 NC_020846_p68 terminase large subunit phrog_2 terminase large subunit head and packaging 1 42685 44109
YP_007673994.1 NC_020846_p32 hypothetical protein phrog_782 unknown function unknown function 1 20233 20655
YP_007674006.1 NC_020846_p44 hypothetical protein singleton unknown function unknown function -1 29935 30153
YP_007674015.1 NC_020846_p53 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 32327 34162
YP_007674002.1 NC_020846_p40 hypothetical protein phrog_329 minor tail protein tail 1 25804 26211
YP_007674032.1 NC_020846_p70 hypothetical protein singleton unknown function unknown function -1 44792 45007
YP_007674016.1 NC_020846_p54 hypothetical protein phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism -1 34164 35021
YP_007673989.1 NC_020846_p27 hypothetical protein phrog_5335 unknown function unknown function 1 18101 18709
YP_007673993.1 NC_020846_p31 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 19832 20236
YP_007674018.1 NC_020846_p56 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 35599 36357
YP_007674025.1 NC_020846_p63 hypothetical protein phrog_16568 Ren-like exclusion protein moron, auxiliary metabolic gene and host takeover 1 40494 40883
YP_007673983.1 NC_020846_p21 hypothetical protein singleton unknown function unknown function -1 14290 14640
YP_007673976.1 NC_020846_p14 hypothetical protein singleton unknown function unknown function 1 7557 7820
YP_007674017.1 NC_020846_p55 hypothetical protein phrog_9002 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 35075 35587
YP_007673966.1 NC_020846_p4 hypothetical protein phrog_359 DNA methyltransferase other 1 1848 2426
YP_007674019.1 NC_020846_p57 hypothetical protein phrog_3022 DNA primase DNA, RNA and nucleotide metabolism -1 36417 38729