| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020846 |
Definition |
Vibrio phage pYD21-A genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
46917 |
Host Name |
Vibrio sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
43.89 |
Number of singletons |
30 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007673978.1 | NC_020846_p16 | hypothetical protein | phrog_19680 | unknown function | unknown function | 1 | 8024 | 8524 |
| YP_007673977.1 | NC_020846_p15 | hypothetical protein | phrog_1275 | Rz-like spanin | lysis | 1 | 7747 | 7959 |
| YP_007673964.1 | NC_020846_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 558 | 707 |
| YP_007673986.1 | NC_020846_p24 | hypothetical protein | phrog_766 | head decoration | head and packaging | 1 | 16305 | 16727 |
| YP_007673973.1 | NC_020846_p11 | endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6425 | 6970 |
| YP_007673997.1 | NC_020846_p35 | hypothetical protein | phrog_774 | unknown function | unknown function | -1 | 21613 | 21813 |
| YP_007673996.1 | NC_020846_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21217 | 21564 |
| YP_007673967.1 | NC_020846_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2420 | 2644 |
| YP_007673990.1 | NC_020846_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18741 | 18971 |
| YP_007674013.1 | NC_020846_p51 | hypothetical protein | phrog_852 | unknown function | unknown function | -1 | 31736 | 31963 |
| YP_007674010.1 | NC_020846_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30906 | 31079 |
| YP_007673998.1 | NC_020846_p36 | hypothetical protein | phrog_791 | unknown function | unknown function | 1 | 21926 | 22522 |
| YP_007673981.1 | NC_020846_p19 | hypothetical protein | phrog_7121 | tail fiber protein | tail | 1 | 10923 | 12962 |
| YP_007673963.1 | NC_020846_p1 | hypothetical protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 1 | 472 |
| YP_007673972.1 | NC_020846_p10 | hypothetical protein | phrog_758 | head morphogenesis | head and packaging | 1 | 5329 | 6207 |
| YP_007674004.1 | NC_020846_p42 | hypothetical protein | phrog_24622 | unknown function | unknown function | -1 | 29450 | 29665 |
| YP_007674035.1 | NC_020846_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45900 | 46259 |
| YP_007673988.1 | NC_020846_p26 | hypothetical protein | phrog_4770 | unknown function | unknown function | 1 | 17824 | 18099 |
| YP_007673982.1 | NC_020846_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12949 | 14265 |
| YP_007674003.1 | NC_020846_p41 | hypothetical protein | phrog_469 | tail protein | tail | 1 | 26192 | 29425 |
| YP_007674026.1 | NC_020846_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40861 | 41256 |
| YP_007674022.1 | NC_020846_p60 | hypothetical protein | phrog_2201 | unknown function | unknown function | 1 | 39724 | 39960 |
| YP_007674005.1 | NC_020846_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29665 | 29931 |
| YP_007673987.1 | NC_020846_p25 | hypothetical protein | phrog_771 | virion structural protein | head and packaging | 1 | 16729 | 17754 |
| YP_007674029.1 | NC_020846_p67 | hypothetical protein | phrog_51 | terminase small subunit | head and packaging | 1 | 42293 | 42685 |
| YP_007674011.1 | NC_020846_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31082 | 31444 |
| YP_007673999.1 | NC_020846_p37 | hypothetical protein | phrog_1538 | tail length tape measure protein | tail | 1 | 22522 | 24843 |
| YP_007674008.1 | NC_020846_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30520 | 30744 |
| YP_007673992.1 | NC_020846_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19467 | 19829 |
| YP_007674001.1 | NC_020846_p39 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 25322 | 25807 |
| YP_007673974.1 | NC_020846_p12 | hypothetical protein | phrog_1768 | endolysin | lysis | 1 | 6967 | 7305 |
| YP_007674034.1 | NC_020846_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45656 | 45919 |
| YP_007673970.1 | NC_020846_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4311 | 4478 |
| YP_007673968.1 | NC_020846_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2641 | 2805 |
| YP_007674021.1 | NC_020846_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39463 | 39621 |
| YP_007673984.1 | NC_020846_p22 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14644 | 15117 |
| YP_007673985.1 | NC_020846_p23 | hypothetical protein | phrog_760 | unknown function | unknown function | 1 | 15184 | 16302 |
| YP_007674009.1 | NC_020846_p47 | hypothetical protein | phrog_409 | transcriptional regulator | transcription regulation | -1 | 30757 | 30909 |
| YP_007674033.1 | NC_020846_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45201 | 45581 |
| YP_007674027.1 | NC_020846_p65 | hypothetical protein | phrog_16568 | Ren-like exclusion protein | moron, auxiliary metabolic gene and host takeover | 1 | 41259 | 41615 |
| YP_007673995.1 | NC_020846_p33 | hypothetical protein | phrog_1407 | major tail protein | tail | 1 | 20717 | 21217 |
| YP_007674020.1 | NC_020846_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38729 | 39010 |
| YP_007673975.1 | NC_020846_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7379 | 7564 |
| YP_007673991.1 | NC_020846_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19078 | 19467 |
| YP_007674014.1 | NC_020846_p52 | hypothetical protein | phrog_824 | unknown function | unknown function | -1 | 31950 | 32330 |
| YP_007674031.1 | NC_020846_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44110 | 44562 |
| YP_007674036.1 | NC_020846_p74 | hypothetical protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46225 | 46899 |
| YP_007673965.1 | NC_020846_p3 | hypothetical protein | phrog_25039 | unknown function | unknown function | -1 | 814 | 1155 |
| YP_007673979.1 | NC_020846_p17 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 8524 | 9705 |
| YP_007674028.1 | NC_020846_p66 | hypothetical protein | phrog_24216 | unknown function | unknown function | 1 | 41672 | 42235 |
| YP_007673980.1 | NC_020846_p18 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9653 | 10045 |
| YP_007674000.1 | NC_020846_p38 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 24843 | 25325 |
| YP_007674023.1 | NC_020846_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39962 | 40276 |
| YP_007674024.1 | NC_020846_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40279 | 40497 |
| YP_007674012.1 | NC_020846_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31447 | 31641 |
| YP_007674007.1 | NC_020846_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30140 | 30433 |
| YP_007673971.1 | NC_020846_p9 | serine/threonine-protein phosphatase 1 | phrog_246 | NinI-like serine-threonine phosphatase | other | 1 | 4475 | 5137 |
| YP_007673969.1 | NC_020846_p7 | hypothetical protein | phrog_146 | portal protein | head and packaging | 1 | 2948 | 4333 |
| YP_007674030.1 | NC_020846_p68 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 42685 | 44109 |
| YP_007673994.1 | NC_020846_p32 | hypothetical protein | phrog_782 | unknown function | unknown function | 1 | 20233 | 20655 |
| YP_007674006.1 | NC_020846_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29935 | 30153 |
| YP_007674015.1 | NC_020846_p53 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 32327 | 34162 |
| YP_007674002.1 | NC_020846_p40 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 25804 | 26211 |
| YP_007674032.1 | NC_020846_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44792 | 45007 |
| YP_007674016.1 | NC_020846_p54 | hypothetical protein | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | -1 | 34164 | 35021 |
| YP_007673989.1 | NC_020846_p27 | hypothetical protein | phrog_5335 | unknown function | unknown function | 1 | 18101 | 18709 |
| YP_007673993.1 | NC_020846_p31 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 19832 | 20236 |
| YP_007674018.1 | NC_020846_p56 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 35599 | 36357 |
| YP_007674025.1 | NC_020846_p63 | hypothetical protein | phrog_16568 | Ren-like exclusion protein | moron, auxiliary metabolic gene and host takeover | 1 | 40494 | 40883 |
| YP_007673983.1 | NC_020846_p21 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14290 | 14640 |
| YP_007673976.1 | NC_020846_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7557 | 7820 |
| YP_007674017.1 | NC_020846_p55 | hypothetical protein | phrog_9002 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 35075 | 35587 |
| YP_007673966.1 | NC_020846_p4 | hypothetical protein | phrog_359 | DNA methyltransferase | other | 1 | 1848 | 2426 |
| YP_007674019.1 | NC_020846_p57 | hypothetical protein | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 36417 | 38729 |