| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020847 |
Definition |
Cyanophage MED4-184 genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
38327 |
Host Name |
Prochlorococcus marinus MED4 |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
37.15 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007674059.1 | NC_020847_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11168 | 11380 |
| YP_007674042.1 | NC_020847_p6 | hypothetical protein | phrog_568 | plasmid stability | DNA, RNA and nucleotide metabolism | 1 | 3331 | 3567 |
| YP_007674082.1 | NC_020847_p46 | hypothetical protein | phrog_247 | major head protein | head and packaging | 1 | 25491 | 26528 |
| YP_007674037.1 | NC_020847_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 211 | 555 |
| YP_007674094.1 | NC_020847_p58 | hypothetical protein | phrog_18 | minor tail protein | tail | 1 | 33137 | 33709 |
| YP_007674039.1 | NC_020847_p3 | hypothetical protein | phrog_9114 | unknown function | unknown function | 1 | 2331 | 2663 |
| YP_007674070.1 | NC_020847_p34 | hypothetical protein | phrog_28597 | unknown function | unknown function | 1 | 16431 | 17132 |
| YP_007674085.1 | NC_020847_p49 | hypothetical protein | phrog_34166 | unknown function | unknown function | 1 | 27574 | 27819 |
| YP_007674091.1 | NC_020847_p55 | hypothetical protein | phrog_20784 | unknown function | unknown function | 1 | 29678 | 30031 |
| YP_007674044.1 | NC_020847_p8 | hypothetical protein | phrog_1755 | unknown function | unknown function | -1 | 4344 | 4931 |
| YP_007674071.1 | NC_020847_p35 | hypothetical protein | phrog_6059 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 17129 | 17914 |
| YP_007674075.1 | NC_020847_p39 | hypothetical protein | phrog_241 | head morphogenesis | head and packaging | 1 | 21041 | 23326 |
| YP_007674047.1 | NC_020847_p11 | hypothetical protein | phrog_21865 | unknown function | unknown function | -1 | 5866 | 6105 |
| YP_007674051.1 | NC_020847_p15 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 7078 | 7302 |
| YP_007674081.1 | NC_020847_p45 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 24751 | 25422 |
| YP_007674041.1 | NC_020847_p5 | hypothetical protein | phrog_20003 | unknown function | unknown function | 1 | 3025 | 3204 |
| YP_007674048.1 | NC_020847_p12 | hypothetical protein | phrog_2738 | unknown function | unknown function | 1 | 6171 | 6335 |
| YP_007674084.1 | NC_020847_p48 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 27017 | 27577 |
| YP_007674092.1 | NC_020847_p56 | tail tape measure protein | phrog_991 | tail length tape measure protein | tail | 1 | 30232 | 32562 |
| YP_007674061.1 | NC_020847_p25 | hypothetical protein | phrog_28298 | unknown function | unknown function | 1 | 12588 | 12794 |
| YP_007674093.1 | NC_020847_p57 | hypothetical protein | phrog_14 | minor tail protein | tail | 1 | 32565 | 33137 |
| YP_007674052.1 | NC_020847_p16 | hypothetical protein | phrog_21418 | unknown function | unknown function | -1 | 7299 | 7922 |
| YP_007674065.1 | NC_020847_p29 | hypothetical protein | phrog_34258 | unknown function | unknown function | 1 | 13647 | 13799 |
| YP_007674079.1 | NC_020847_p43 | hypothetical protein | phrog_31838 | unknown function | unknown function | 1 | 24284 | 24439 |
| YP_007674088.1 | NC_020847_p52 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 28623 | 29045 |
| YP_007674078.1 | NC_020847_p42 | hypothetical protein | phrog_28338 | unknown function | unknown function | 1 | 24018 | 24287 |
| YP_007674074.1 | NC_020847_p38 | hypothetical protein | phrog_145 | portal protein | head and packaging | 1 | 19688 | 21037 |
| YP_007674076.1 | NC_020847_p40 | hypothetical protein | phrog_36872 | unknown function | unknown function | 1 | 23323 | 23514 |
| YP_007674067.1 | NC_020847_p31 | hypothetical protein | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 14354 | 15121 |
| YP_007674058.1 | NC_020847_p22 | hypothetical protein | phrog_5643 | unknown function | unknown function | -1 | 10936 | 11175 |
| YP_007674073.1 | NC_020847_p37 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | 1 | 18234 | 19577 |
| YP_007674086.1 | NC_020847_p50 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 27816 | 28169 |
| YP_007674062.1 | NC_020847_p26 | hypothetical protein | phrog_336 | unknown function | unknown function | 1 | 12775 | 12966 |
| YP_007674055.1 | NC_020847_p19 | hypothetical protein | phrog_34479 | unknown function | unknown function | -1 | 9738 | 10133 |
| YP_007674068.1 | NC_020847_p32 | hypothetical protein | phrog_35089 | unknown function | unknown function | 1 | 15126 | 15599 |
| YP_007674045.1 | NC_020847_p9 | hypothetical protein | phrog_650 | unknown function | unknown function | -1 | 4921 | 5358 |
| YP_007674090.1 | NC_020847_p54 | hypothetical protein | phrog_10528 | major tail protein | tail | 1 | 29230 | 29649 |
| YP_007674054.1 | NC_020847_p18 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 8778 | 9593 |
| YP_007674063.1 | NC_020847_p27 | hypothetical protein | phrog_35258 | unknown function | unknown function | 1 | 13039 | 13380 |
| YP_007674095.1 | NC_020847_p59 | hypothetical protein | phrog_35166 | unknown function | unknown function | 1 | 33706 | 34674 |
| YP_007674057.1 | NC_020847_p21 | hypothetical protein | phrog_30520 | unknown function | unknown function | -1 | 10590 | 10811 |
| YP_007674049.1 | NC_020847_p13 | hypothetical protein | phrog_30071 | unknown function | unknown function | 1 | 6317 | 6610 |
| YP_007674060.1 | NC_020847_p24 | hypothetical protein | phrog_36669 | unknown function | unknown function | 1 | 11584 | 12588 |
| YP_007674080.1 | NC_020847_p44 | hypothetical protein | phrog_7595 | unknown function | unknown function | 1 | 24436 | 24714 |
| YP_007674053.1 | NC_020847_p17 | hypothetical protein | phrog_5931 | unknown function | unknown function | -1 | 7919 | 8785 |
| YP_007674069.1 | NC_020847_p33 | DNA methylase | phrog_9353 | unknown function | unknown function | 1 | 15790 | 16431 |
| YP_007674066.1 | NC_020847_p30 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 13899 | 14348 |
| YP_007674083.1 | NC_020847_p47 | hypothetical protein | phrog_18251 | unknown function | unknown function | 1 | 26531 | 26896 |
| YP_007674077.1 | NC_020847_p41 | hypothetical protein | phrog_38321 | unknown function | unknown function | 1 | 23840 | 24052 |
| YP_007674089.1 | NC_020847_p53 | hypothetical protein | phrog_38229 | unknown function | unknown function | 1 | 29048 | 29200 |
| YP_007674087.1 | NC_020847_p51 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 28171 | 28623 |
| YP_007674072.1 | NC_020847_p36 | hypothetical protein | phrog_34910 | unknown function | unknown function | 1 | 17914 | 18237 |
| YP_007674056.1 | NC_020847_p20 | hypothetical protein | phrog_35402 | unknown function | unknown function | -1 | 10130 | 10597 |
| YP_007674046.1 | NC_020847_p10 | hypothetical protein | phrog_564 | unknown function | unknown function | -1 | 5351 | 5869 |
| YP_007674064.1 | NC_020847_p28 | hypothetical protein | phrog_35960 | unknown function | unknown function | 1 | 13370 | 13582 |
| YP_007674038.1 | NC_020847_p2 | hypothetical protein | phrog_29834 | unknown function | unknown function | 1 | 589 | 2334 |
| YP_007674043.1 | NC_020847_p7 | hypothetical protein | phrog_570 | unknown function | unknown function | 1 | 3568 | 4215 |
| YP_007674050.1 | NC_020847_p14 | hypothetical protein | phrog_37725 | unknown function | unknown function | -1 | 6755 | 7075 |
| YP_007674040.1 | NC_020847_p4 | hypothetical protein | phrog_7802 | unknown function | unknown function | 1 | 2687 | 3022 |