| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020848 |
Definition |
Vibrio phage VBP47 genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
76705 |
Host Name |
Vibrio parahaemolyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
115 |
%GC |
42.45 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007674175.1 | NC_020848_p80 | hypothetical protein | phrog_31527 | unknown function | unknown function | 1 | 64354 | 64521 |
| YP_007674106.1 | NC_020848_p11 | hypothetical protein | phrog_729 | cold shock protein | other | 1 | 5066 | 5278 |
| YP_007674196.1 | NC_020848_p101 | hypothetical protein | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 70982 | 71689 |
| YP_007674148.1 | NC_020848_p53 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 45192 | 45533 |
| YP_007674121.1 | NC_020848_p26 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 14611 | 14877 |
| YP_007674116.1 | NC_020848_p21 | hypothetical protein | phrog_26431 | unknown function | unknown function | 1 | 10779 | 11030 |
| YP_007674206.1 | NC_020848_p111 | hypothetical protein | phrog_30485 | unknown function | unknown function | 1 | 75198 | 75467 |
| YP_007674118.1 | NC_020848_p23 | hypothetical protein | phrog_22623 | unknown function | unknown function | 1 | 11326 | 11661 |
| YP_007674153.1 | NC_020848_p58 | hypothetical protein | phrog_19043 | unknown function | unknown function | -1 | 49401 | 49700 |
| YP_007674102.1 | NC_020848_p7 | hypothetical protein | phrog_3118 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2963 | 3322 |
| YP_007674190.1 | NC_020848_p95 | hypothetical protein | phrog_25095 | unknown function | unknown function | 1 | 68433 | 68711 |
| YP_007674141.1 | NC_020848_p46 | hypothetical protein | phrog_20377 | unknown function | unknown function | -1 | 37511 | 38374 |
| YP_007674128.1 | NC_020848_p33 | hypothetical protein | phrog_35441 | unknown function | unknown function | 1 | 18724 | 19002 |
| YP_007674174.1 | NC_020848_p79 | hypothetical protein | phrog_37661 | unknown function | unknown function | 1 | 64116 | 64361 |
| YP_007674209.1 | NC_020848_p114 | hypothetical protein | phrog_21573 | unknown function | unknown function | 1 | 76278 | 76505 |
| YP_007674156.1 | NC_020848_p61 | hypothetical protein | phrog_17691 | unknown function | unknown function | -1 | 52564 | 53007 |
| YP_007674137.1 | NC_020848_p42 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 26459 | 26983 |
| YP_007674107.1 | NC_020848_p12 | hypothetical protein | phrog_26125 | unknown function | unknown function | 1 | 5279 | 5434 |
| YP_007674117.1 | NC_020848_p22 | hypothetical protein | phrog_20260 | unknown function | unknown function | 1 | 11045 | 11308 |
| YP_007674147.1 | NC_020848_p52 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 44047 | 45192 |
| YP_007674195.1 | NC_020848_p100 | hypothetical protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 69925 | 70926 |
| YP_007674165.1 | NC_020848_p70 | hypothetical protein | phrog_25968 | unknown function | unknown function | 1 | 61799 | 61975 |
| YP_007674160.1 | NC_020848_p65 | hypothetical protein | phrog_33980 | unknown function | unknown function | -1 | 59024 | 59305 |
| YP_007674149.1 | NC_020848_p54 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 45565 | 45981 |
| YP_007674104.1 | NC_020848_p9 | ATPase | phrog_1297 | ATPase | other | 1 | 3559 | 4575 |
| YP_007674144.1 | NC_020848_p49 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 41148 | 41945 |
| YP_007674152.1 | NC_020848_p57 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 49000 | 49377 |
| YP_007674177.1 | NC_020848_p82 | hypothetical protein | phrog_19759 | unknown function | unknown function | 1 | 64979 | 65242 |
| YP_007674124.1 | NC_020848_p29 | hypothetical protein | phrog_30140 | unknown function | unknown function | 1 | 15834 | 15995 |
| YP_007674105.1 | NC_020848_p10 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4575 | 5057 |
| YP_007674139.1 | NC_020848_p44 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 27422 | 27784 |
| YP_007674158.1 | NC_020848_p63 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 56663 | 57370 |
| YP_007674203.1 | NC_020848_p108 | hypothetical protein | phrog_22108 | unknown function | unknown function | 1 | 73028 | 73309 |
| YP_007674112.1 | NC_020848_p17 | hypothetical protein | phrog_32924 | unknown function | unknown function | -1 | 7720 | 8700 |
| YP_007674162.1 | NC_020848_p67 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 59709 | 60410 |
| YP_007674133.1 | NC_020848_p38 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 22476 | 24626 |
| YP_007674109.1 | NC_020848_p14 | hypothetical protein | phrog_22159 | unknown function | unknown function | 1 | 6732 | 6899 |
| YP_007674192.1 | NC_020848_p97 | hypothetical protein | phrog_24006 | unknown function | unknown function | 1 | 68944 | 69153 |
| YP_007674114.1 | NC_020848_p19 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9081 | 9578 |
| YP_007674186.1 | NC_020848_p91 | hypothetical protein | phrog_32355 | unknown function | unknown function | 1 | 67191 | 67433 |
| YP_007674101.1 | NC_020848_p6 | hypothetical protein | phrog_22043 | unknown function | unknown function | 1 | 1935 | 2261 |
| YP_007674189.1 | NC_020848_p94 | hypothetical protein | phrog_21486 | unknown function | unknown function | 1 | 68119 | 68376 |
| YP_007674185.1 | NC_020848_p90 | hypothetical protein | phrog_34664 | unknown function | unknown function | 1 | 66967 | 67194 |
| YP_007674143.1 | NC_020848_p48 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 39075 | 41099 |
| YP_007674180.1 | NC_020848_p85 | hypothetical protein | phrog_37233 | unknown function | unknown function | 1 | 65814 | 65966 |
| YP_007674097.1 | NC_020848_p2 | hypothetical protein | phrog_3878 | unknown function | unknown function | 1 | 303 | 746 |
| YP_007674201.1 | NC_020848_p106 | hypothetical protein | phrog_28266 | unknown function | unknown function | 1 | 72555 | 72797 |
| YP_007674132.1 | NC_020848_p37 | hypothetical protein | phrog_19493 | unknown function | unknown function | 1 | 21645 | 22463 |
| YP_007674167.1 | NC_020848_p72 | hypothetical protein | phrog_37304 | unknown function | unknown function | 1 | 62563 | 62769 |
| YP_007674166.1 | NC_020848_p71 | hypothetical protein | phrog_19839 | unknown function | unknown function | 1 | 62208 | 62453 |
| YP_007674125.1 | NC_020848_p30 | hypothetical protein | phrog_715 | MazG-like pyrophosphatase | other | 1 | 15988 | 16416 |
| YP_007674172.1 | NC_020848_p77 | hypothetical protein | phrog_31927 | unknown function | unknown function | 1 | 63708 | 63887 |
| YP_007674126.1 | NC_020848_p31 | hypothetical protein | phrog_14305 | unknown function | unknown function | 1 | 16409 | 16567 |
| YP_007674181.1 | NC_020848_p86 | hypothetical protein | phrog_31920 | unknown function | unknown function | 1 | 65969 | 66250 |
| YP_007674113.1 | NC_020848_p18 | hypothetical protein | phrog_21021 | unknown function | unknown function | 1 | 8739 | 9035 |
| YP_007674155.1 | NC_020848_p60 | hypothetical protein | phrog_25191 | unknown function | unknown function | -1 | 49993 | 52560 |
| YP_007674138.1 | NC_020848_p43 | hypothetical protein | phrog_20916 | unknown function | unknown function | 1 | 26961 | 27332 |
| YP_007674127.1 | NC_020848_p32 | ribonucleoside-diphosphate reductase alpha subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 16621 | 18714 |
| YP_007674135.1 | NC_020848_p40 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 24935 | 25663 |
| YP_007674159.1 | NC_020848_p64 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 57414 | 59024 |
| YP_007674194.1 | NC_020848_p99 | hypothetical protein | phrog_37164 | unknown function | unknown function | 1 | 69490 | 69876 |
| YP_007674099.1 | NC_020848_p4 | hypothetical protein | phrog_24612 | unknown function | unknown function | 1 | 1119 | 1475 |
| YP_007674183.1 | NC_020848_p88 | hypothetical protein | phrog_34265 | unknown function | unknown function | 1 | 66472 | 66669 |
| YP_007674146.1 | NC_020848_p51 | major coat protein | phrog_1357 | major head protein | head and packaging | -1 | 42582 | 44030 |
| YP_007674140.1 | NC_020848_p45 | hypothetical protein | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27798 | 37460 |
| YP_007674129.1 | NC_020848_p34 | ribonucleoside diphosphate reductase subunit beta | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 19002 | 20072 |
| YP_007674096.1 | NC_020848_p1 | hypothetical protein | phrog_21573 | unknown function | unknown function | 1 | 86 | 313 |
| YP_007674205.1 | NC_020848_p110 | hypothetical protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 74595 | 75071 |
| YP_007674115.1 | NC_020848_p20 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9604 | 10767 |
| YP_007674173.1 | NC_020848_p78 | hypothetical protein | phrog_32436 | unknown function | unknown function | 1 | 63896 | 64105 |
| YP_007674098.1 | NC_020848_p3 | hypothetical protein | phrog_22405 | unknown function | unknown function | 1 | 746 | 1135 |
| YP_007674188.1 | NC_020848_p93 | hypothetical protein | phrog_38510 | unknown function | unknown function | 1 | 67680 | 67970 |
| YP_007674182.1 | NC_020848_p87 | hypothetical protein | phrog_35828 | unknown function | unknown function | 1 | 66250 | 66468 |
| YP_007674208.1 | NC_020848_p113 | hypothetical protein | phrog_24769 | unknown function | unknown function | 1 | 75896 | 76300 |
| YP_007674150.1 | NC_020848_p55 | hypothetical protein | phrog_1216 | portal protein | head and packaging | -1 | 46069 | 48183 |
| YP_007674130.1 | NC_020848_p35 | hypothetical protein | phrog_24997 | unknown function | unknown function | 1 | 20090 | 20650 |
| YP_007674184.1 | NC_020848_p89 | hypothetical protein | phrog_24521 | unknown function | unknown function | 1 | 66671 | 66967 |
| YP_007674122.1 | NC_020848_p27 | hypothetical protein | phrog_23902 | unknown function | unknown function | 1 | 14882 | 15211 |
| YP_007674111.1 | NC_020848_p16 | hypothetical protein | phrog_27189 | unknown function | unknown function | 1 | 7374 | 7610 |
| YP_007674164.1 | NC_020848_p69 | hypothetical protein | phrog_18963 | unknown function | unknown function | 1 | 61096 | 61470 |
| YP_007674110.1 | NC_020848_p15 | hypothetical protein | phrog_29410 | unknown function | unknown function | 1 | 6896 | 7372 |
| YP_007674198.1 | NC_020848_p103 | hypothetical protein | phrog_38112 | unknown function | unknown function | 1 | 71885 | 72100 |
| YP_007674163.1 | NC_020848_p68 | hypothetical protein | phrog_1827 | ATP-dependent protease | other | 1 | 60494 | 61048 |
| YP_007674120.1 | NC_020848_p25 | hypothetical protein | phrog_25446 | unknown function | unknown function | 1 | 14274 | 14609 |
| YP_007674193.1 | NC_020848_p98 | hypothetical protein | phrog_32938 | unknown function | unknown function | 1 | 69309 | 69500 |
| YP_007674170.1 | NC_020848_p75 | hypothetical protein | phrog_23892 | unknown function | unknown function | 1 | 63335 | 63493 |
| YP_007674204.1 | NC_020848_p109 | hypothetical protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 73375 | 74586 |
| YP_007674197.1 | NC_020848_p102 | hypothetical protein | phrog_20611 | unknown function | unknown function | 1 | 71673 | 71888 |
| YP_007674169.1 | NC_020848_p74 | hypothetical protein | phrog_28050 | unknown function | unknown function | 1 | 63061 | 63333 |
| YP_007674100.1 | NC_020848_p5 | hypothetical protein | phrog_28857 | unknown function | unknown function | 1 | 1532 | 1741 |
| YP_007674131.1 | NC_020848_p36 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 20659 | 21645 |
| YP_007674142.1 | NC_020848_p47 | hypothetical protein | phrog_18869 | unknown function | unknown function | -1 | 38377 | 39063 |
| YP_007674103.1 | NC_020848_p8 | hypothetical protein | phrog_21445 | unknown function | unknown function | 1 | 3303 | 3533 |
| YP_007674191.1 | NC_020848_p96 | hypothetical protein | phrog_28835 | unknown function | unknown function | 1 | 68715 | 68969 |
| YP_007674179.1 | NC_020848_p84 | hypothetical protein | phrog_35835 | unknown function | unknown function | 1 | 65557 | 65811 |
| YP_007674200.1 | NC_020848_p105 | hypothetical protein | phrog_32854 | unknown function | unknown function | 1 | 72311 | 72574 |
| YP_007674176.1 | NC_020848_p81 | hypothetical protein | phrog_35487 | unknown function | unknown function | 1 | 64692 | 64979 |
| YP_007674161.1 | NC_020848_p66 | hypothetical protein | phrog_30842 | unknown function | unknown function | -1 | 59405 | 59728 |
| YP_007674202.1 | NC_020848_p107 | hypothetical protein | phrog_23110 | unknown function | unknown function | 1 | 72790 | 73041 |
| YP_007674123.1 | NC_020848_p28 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 15221 | 15862 |
| YP_007674157.1 | NC_020848_p62 | hypothetical protein | phrog_35823 | unknown function | unknown function | -1 | 53235 | 56672 |
| YP_007674151.1 | NC_020848_p56 | PhoH family protein | phrog_170 | PhoH-like phosphate starvation-inducible | other | 1 | 48279 | 49013 |
| YP_007674136.1 | NC_020848_p41 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 25728 | 26459 |
| YP_007674207.1 | NC_020848_p112 | hypothetical protein | phrog_33616 | unknown function | unknown function | 1 | 75460 | 75753 |
| YP_007674108.1 | NC_020848_p13 | hypothetical protein | phrog_11908 | unknown function | unknown function | 1 | 5431 | 6732 |
| YP_007674134.1 | NC_020848_p39 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 24645 | 24926 |
| YP_007674199.1 | NC_020848_p104 | hypothetical protein | phrog_37931 | unknown function | unknown function | 1 | 72097 | 72318 |
| YP_007674210.1 | NC_020848_p115 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76495 | 76671 |
| YP_007674178.1 | NC_020848_p83 | hypothetical protein | phrog_31380 | unknown function | unknown function | 1 | 65277 | 65552 |
| YP_007674119.1 | NC_020848_p24 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11663 | 14287 |
| YP_007674145.1 | NC_020848_p50 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 41950 | 42492 |
| YP_007674171.1 | NC_020848_p76 | hypothetical protein | phrog_31013 | unknown function | unknown function | 1 | 63480 | 63698 |
| YP_007674187.1 | NC_020848_p92 | hypothetical protein | phrog_31641 | unknown function | unknown function | 1 | 67430 | 67702 |
| YP_007674168.1 | NC_020848_p73 | hypothetical protein | phrog_31278 | unknown function | unknown function | 1 | 62772 | 63059 |
| YP_007674154.1 | NC_020848_p59 | hypothetical protein | phrog_402 | unknown function | unknown function | -1 | 49704 | 49889 |