Genomic map of Pseudoalteromonas phage pYD6-A (NC_020849)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020849
Definition
Pseudoalteromonas phage pYD6-A genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
76802
Host Name
Pseudoalteromonas sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
99
%GC
38.65
Number of singletons
17
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007674243.1 NC_020849_p33 hypothetical protein phrog_22405 unknown function unknown function 1 12215 12613
YP_007674287.1 NC_020849_p77 hypothetical protein phrog_20377 unknown function unknown function -1 51844 52710
YP_007674299.1 NC_020849_p89 hypothetical protein phrog_402 unknown function unknown function -1 63686 63871
YP_007674285.1 NC_020849_p75 hypothetical protein phrog_20916 unknown function unknown function 1 41552 41914
YP_007674235.1 NC_020849_p25 hypothetical protein phrog_23110 unknown function unknown function 1 7948 8217
YP_007674269.1 NC_020849_p59 hypothetical protein phrog_23902 unknown function unknown function 1 28110 28439
YP_007674300.1 NC_020849_p90 hypothetical protein phrog_25191 unknown function unknown function -1 63966 66254
YP_007674232.1 NC_020849_p22 hypothetical protein phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 6504 7484
YP_007674273.1 NC_020849_p63 ribonucleotide-diphosphate reductase subunit alpha phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 29870 33171
YP_007674251.1 NC_020849_p41 hypothetical protein phrog_1297 ATPase other 1 15595 17480
YP_007674250.1 NC_020849_p40 hypothetical protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14817 15440
YP_007674229.1 NC_020849_p19 hypothetical protein phrog_21486 unknown function unknown function 1 5285 5596
YP_007674276.1 NC_020849_p66 hypothetical protein phrog_24997 unknown function unknown function 1 34264 34824
YP_007674297.1 NC_020849_p87 hypothetical protein phrog_894 endolysin lysis 1 62977 63354
YP_007674242.1 NC_020849_p32 hypothetical protein phrog_21573 unknown function unknown function 1 11935 12168
YP_007674248.1 NC_020849_p38 hypothetical protein phrog_3118 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14200 14550
YP_007674286.1 NC_020849_p76 hypothetical protein phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 42026 51820
YP_007674254.1 NC_020849_p44 hypothetical protein phrog_729 cold shock protein other 1 18133 18345
YP_007674272.1 NC_020849_p62 hypothetical protein phrog_14305 unknown function unknown function 1 29658 29816
YP_007674281.1 NC_020849_p71 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 39119 39847
YP_007674277.1 NC_020849_p67 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 34833 35819
YP_007674275.1 NC_020849_p65 ribonucleotide-diphosphate reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 33182 34249
YP_007674293.1 NC_020849_p83 hypothetical protein phrog_2120 tail length tape measure protein tail -1 58474 59619
YP_007674305.1 NC_020849_p95 hypothetical protein phrog_38 terminase large subunit head and packaging -1 73089 74702
YP_007674238.1 NC_020849_p28 hypothetical protein singleton unknown function unknown function 1 9555 9851
YP_007674289.1 NC_020849_p79 hypothetical protein phrog_2220 unknown function unknown function -1 53508 55526
YP_007674283.1 NC_020849_p73 hypothetical protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 40319 41041
YP_007674216.1 NC_020849_p6 hypothetical protein phrog_23892 unknown function unknown function 1 1636 1809
YP_007674292.1 NC_020849_p82 major coat protein phrog_1357 major head protein head and packaging -1 57010 58458
YP_007674244.1 NC_020849_p34 hypothetical protein phrog_24612 unknown function unknown function 1 12606 12959
YP_007674218.1 NC_020849_p8 hypothetical protein singleton unknown function unknown function 1 1932 2213
YP_007674253.1 NC_020849_p43 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 17485 18132
YP_007674224.1 NC_020849_p14 hypothetical protein singleton unknown function unknown function 1 3525 3803
YP_007674301.1 NC_020849_p91 hypothetical protein phrog_17691 unknown function unknown function -1 66258 66701
YP_007674288.1 NC_020849_p78 hypothetical protein phrog_18869 unknown function unknown function -1 52707 53495
YP_007674222.1 NC_020849_p12 hypothetical protein singleton unknown function unknown function 1 3019 3303
YP_007674230.1 NC_020849_p20 hypothetical protein phrog_25095 unknown function unknown function 1 5893 6174
YP_007674237.1 NC_020849_p27 hypothetical protein phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 8549 9280
YP_007674270.1 NC_020849_p60 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 28449 29111
YP_007674268.1 NC_020849_p58 hypothetical protein phrog_236 nucleotide kinase other 1 27881 28105
YP_007674236.1 NC_020849_p26 hypothetical protein phrog_22108 unknown function unknown function 1 8204 8500
YP_007674302.1 NC_020849_p92 hypothetical protein singleton unknown function unknown function -1 67062 69287
YP_007674260.1 NC_020849_p50 hypothetical protein singleton unknown function unknown function 1 21666 21818
YP_007674295.1 NC_020849_p85 hypothetical protein phrog_1216 portal protein head and packaging -1 60042 62159
YP_007674262.1 NC_020849_p52 hypothetical protein phrog_26431 unknown function unknown function 1 23041 23286
YP_007674308.1 NC_020849_p98 hypothetical protein phrog_18963 unknown function unknown function 1 76184 76507
YP_007674211.1 NC_020849_p1 hypothetical protein singleton unknown function unknown function 1 3 137
YP_007674274.1 NC_020849_p64 hypothetical protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 31735 32619
YP_007674214.1 NC_020849_p4 hypothetical protein phrog_19839 unknown function unknown function 1 1006 1239
YP_007674257.1 NC_020849_p47 hypothetical protein singleton unknown function unknown function -1 20305 20898
YP_007674294.1 NC_020849_p84 hypothetical protein phrog_2346 unknown function unknown function -1 59619 59960
YP_007674307.1 NC_020849_p97 hypothetical protein phrog_1827 ATP-dependent protease other 1 75583 76137
YP_007674298.1 NC_020849_p88 hypothetical protein phrog_19043 unknown function unknown function -1 63383 63682
YP_007674240.1 NC_020849_p30 hypothetical protein phrog_29903 unknown function unknown function 1 11107 11415
YP_007674213.1 NC_020849_p3 hypothetical protein phrog_25968 unknown function unknown function 1 497 679
YP_007674252.1 NC_020849_p42 ATPase phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16355 16915
YP_007674278.1 NC_020849_p68 hypothetical protein phrog_19493 unknown function unknown function 1 35819 36646
YP_007674221.1 NC_020849_p11 hypothetical protein singleton unknown function unknown function 1 2758 3009
YP_007674266.1 NC_020849_p56 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 25792 26484
YP_007674263.1 NC_020849_p53 hypothetical protein phrog_20260 unknown function unknown function 1 23304 23576
YP_007674212.1 NC_020849_p2 hypothetical protein phrog_22839 unknown function unknown function -1 149 301
YP_007674233.1 NC_020849_p23 hypothetical protein phrog_29072 unknown function unknown function 1 7468 7710
YP_007674228.1 NC_020849_p18 hypothetical protein singleton unknown function unknown function 1 4665 4985
YP_007674220.1 NC_020849_p10 hypothetical protein phrog_19759 unknown function unknown function 1 2482 2748
YP_007674241.1 NC_020849_p31 hypothetical protein phrog_24769 unknown function unknown function 1 11603 11938
YP_007674227.1 NC_020849_p17 hypothetical protein phrog_24521 unknown function unknown function 1 4369 4668
YP_007674306.1 NC_020849_p96 hypothetical protein phrog_2109 unknown function unknown function -1 74798 75487
YP_007674264.1 NC_020849_p54 hypothetical protein phrog_22623 unknown function unknown function 1 23593 23919
YP_007674267.1 NC_020849_p57 hypothetical protein phrog_25446 unknown function unknown function 1 27529 27888
YP_007674291.1 NC_020849_p81 hypothetical protein phrog_2130 unknown function unknown function -1 56379 56921
YP_007674259.1 NC_020849_p49 hypothetical protein phrog_21021 unknown function unknown function 1 21353 21649
YP_007674265.1 NC_020849_p55 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 23921 27557
YP_007674246.1 NC_020849_p36 hypothetical protein singleton unknown function unknown function 1 13379 13540
YP_007674296.1 NC_020849_p86 phosphate starvation-inducible protein phrog_170 PhoH-like phosphate starvation-inducible other 1 62256 62990
YP_007674239.1 NC_020849_p29 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 10305 10787
YP_007674282.1 NC_020849_p72 hypothetical protein phrog_953 HNH endonuclease DNA, RNA and nucleotide metabolism 1 39847 40308
YP_007674256.1 NC_020849_p46 hypothetical protein phrog_11908 unknown function unknown function 1 18497 19792
YP_007674255.1 NC_020849_p45 hypothetical protein phrog_26125 unknown function unknown function 1 18342 18500
YP_007674258.1 NC_020849_p48 hypothetical protein phrog_25621 unknown function unknown function -1 20898 21272
YP_007674231.1 NC_020849_p21 hypothetical protein phrog_24006 unknown function unknown function 1 6177 6401
YP_007674271.1 NC_020849_p61 hypothetical protein phrog_715 MazG-like pyrophosphatase other 1 29237 29665
YP_007674226.1 NC_020849_p16 hypothetical protein singleton unknown function unknown function 1 4075 4344
YP_007674217.1 NC_020849_p7 hypothetical protein singleton unknown function unknown function 1 1790 1939
YP_007674284.1 NC_020849_p74 hypothetical protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 41047 41574
YP_007674223.1 NC_020849_p13 hypothetical protein singleton unknown function unknown function 1 3362 3523
YP_007674261.1 NC_020849_p51 hypothetical protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21862 23028
YP_007674280.1 NC_020849_p70 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 38781 39110
YP_007674309.1 NC_020849_p99 hypothetical protein phrog_22839 unknown function unknown function -1 76519 76671
YP_007674225.1 NC_020849_p15 hypothetical protein singleton unknown function unknown function 1 3803 4075
YP_007674304.1 NC_020849_p94 hypothetical protein phrog_2125 virion structural protein head and packaging -1 72338 73045
YP_007674247.1 NC_020849_p37 hypothetical protein phrog_22043 unknown function unknown function 1 13537 13860
YP_007674303.1 NC_020849_p93 hypothetical protein phrog_27367 tail fiber protein tail -1 69495 72347
YP_007674249.1 NC_020849_p39 hypothetical protein phrog_21445 unknown function unknown function 1 14567 14797
YP_007674290.1 NC_020849_p80 hypothetical protein phrog_2050 virion structural protein head and packaging -1 55575 56375
YP_007674219.1 NC_020849_p9 hypothetical protein phrog_19759 unknown function unknown function 1 2215 2478
YP_007674279.1 NC_020849_p69 hypothetical protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 36659 38809
YP_007674234.1 NC_020849_p24 hypothetical protein phrog_20611 unknown function unknown function 1 7700 7915
YP_007674215.1 NC_020849_p5 hypothetical protein singleton unknown function unknown function 1 1353 1646
YP_007674245.1 NC_020849_p35 hypothetical protein singleton unknown function unknown function 1 12960 13346