| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020849 |
Definition |
Pseudoalteromonas phage pYD6-A genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
76802 |
Host Name |
Pseudoalteromonas sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
38.65 |
Number of singletons |
17 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007674243.1 | NC_020849_p33 | hypothetical protein | phrog_22405 | unknown function | unknown function | 1 | 12215 | 12613 |
| YP_007674287.1 | NC_020849_p77 | hypothetical protein | phrog_20377 | unknown function | unknown function | -1 | 51844 | 52710 |
| YP_007674299.1 | NC_020849_p89 | hypothetical protein | phrog_402 | unknown function | unknown function | -1 | 63686 | 63871 |
| YP_007674285.1 | NC_020849_p75 | hypothetical protein | phrog_20916 | unknown function | unknown function | 1 | 41552 | 41914 |
| YP_007674235.1 | NC_020849_p25 | hypothetical protein | phrog_23110 | unknown function | unknown function | 1 | 7948 | 8217 |
| YP_007674269.1 | NC_020849_p59 | hypothetical protein | phrog_23902 | unknown function | unknown function | 1 | 28110 | 28439 |
| YP_007674300.1 | NC_020849_p90 | hypothetical protein | phrog_25191 | unknown function | unknown function | -1 | 63966 | 66254 |
| YP_007674232.1 | NC_020849_p22 | hypothetical protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6504 | 7484 |
| YP_007674273.1 | NC_020849_p63 | ribonucleotide-diphosphate reductase subunit alpha | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 29870 | 33171 |
| YP_007674251.1 | NC_020849_p41 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 15595 | 17480 |
| YP_007674250.1 | NC_020849_p40 | hypothetical protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14817 | 15440 |
| YP_007674229.1 | NC_020849_p19 | hypothetical protein | phrog_21486 | unknown function | unknown function | 1 | 5285 | 5596 |
| YP_007674276.1 | NC_020849_p66 | hypothetical protein | phrog_24997 | unknown function | unknown function | 1 | 34264 | 34824 |
| YP_007674297.1 | NC_020849_p87 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 62977 | 63354 |
| YP_007674242.1 | NC_020849_p32 | hypothetical protein | phrog_21573 | unknown function | unknown function | 1 | 11935 | 12168 |
| YP_007674248.1 | NC_020849_p38 | hypothetical protein | phrog_3118 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14200 | 14550 |
| YP_007674286.1 | NC_020849_p76 | hypothetical protein | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 42026 | 51820 |
| YP_007674254.1 | NC_020849_p44 | hypothetical protein | phrog_729 | cold shock protein | other | 1 | 18133 | 18345 |
| YP_007674272.1 | NC_020849_p62 | hypothetical protein | phrog_14305 | unknown function | unknown function | 1 | 29658 | 29816 |
| YP_007674281.1 | NC_020849_p71 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39119 | 39847 |
| YP_007674277.1 | NC_020849_p67 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 34833 | 35819 |
| YP_007674275.1 | NC_020849_p65 | ribonucleotide-diphosphate reductase beta subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 33182 | 34249 |
| YP_007674293.1 | NC_020849_p83 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 58474 | 59619 |
| YP_007674305.1 | NC_020849_p95 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 73089 | 74702 |
| YP_007674238.1 | NC_020849_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9555 | 9851 |
| YP_007674289.1 | NC_020849_p79 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 53508 | 55526 |
| YP_007674283.1 | NC_020849_p73 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40319 | 41041 |
| YP_007674216.1 | NC_020849_p6 | hypothetical protein | phrog_23892 | unknown function | unknown function | 1 | 1636 | 1809 |
| YP_007674292.1 | NC_020849_p82 | major coat protein | phrog_1357 | major head protein | head and packaging | -1 | 57010 | 58458 |
| YP_007674244.1 | NC_020849_p34 | hypothetical protein | phrog_24612 | unknown function | unknown function | 1 | 12606 | 12959 |
| YP_007674218.1 | NC_020849_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1932 | 2213 |
| YP_007674253.1 | NC_020849_p43 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 17485 | 18132 |
| YP_007674224.1 | NC_020849_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3525 | 3803 |
| YP_007674301.1 | NC_020849_p91 | hypothetical protein | phrog_17691 | unknown function | unknown function | -1 | 66258 | 66701 |
| YP_007674288.1 | NC_020849_p78 | hypothetical protein | phrog_18869 | unknown function | unknown function | -1 | 52707 | 53495 |
| YP_007674222.1 | NC_020849_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3019 | 3303 |
| YP_007674230.1 | NC_020849_p20 | hypothetical protein | phrog_25095 | unknown function | unknown function | 1 | 5893 | 6174 |
| YP_007674237.1 | NC_020849_p27 | hypothetical protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 8549 | 9280 |
| YP_007674270.1 | NC_020849_p60 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 28449 | 29111 |
| YP_007674268.1 | NC_020849_p58 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 27881 | 28105 |
| YP_007674236.1 | NC_020849_p26 | hypothetical protein | phrog_22108 | unknown function | unknown function | 1 | 8204 | 8500 |
| YP_007674302.1 | NC_020849_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67062 | 69287 |
| YP_007674260.1 | NC_020849_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21666 | 21818 |
| YP_007674295.1 | NC_020849_p85 | hypothetical protein | phrog_1216 | portal protein | head and packaging | -1 | 60042 | 62159 |
| YP_007674262.1 | NC_020849_p52 | hypothetical protein | phrog_26431 | unknown function | unknown function | 1 | 23041 | 23286 |
| YP_007674308.1 | NC_020849_p98 | hypothetical protein | phrog_18963 | unknown function | unknown function | 1 | 76184 | 76507 |
| YP_007674211.1 | NC_020849_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3 | 137 |
| YP_007674274.1 | NC_020849_p64 | hypothetical protein | phrog_559 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 31735 | 32619 |
| YP_007674214.1 | NC_020849_p4 | hypothetical protein | phrog_19839 | unknown function | unknown function | 1 | 1006 | 1239 |
| YP_007674257.1 | NC_020849_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20305 | 20898 |
| YP_007674294.1 | NC_020849_p84 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 59619 | 59960 |
| YP_007674307.1 | NC_020849_p97 | hypothetical protein | phrog_1827 | ATP-dependent protease | other | 1 | 75583 | 76137 |
| YP_007674298.1 | NC_020849_p88 | hypothetical protein | phrog_19043 | unknown function | unknown function | -1 | 63383 | 63682 |
| YP_007674240.1 | NC_020849_p30 | hypothetical protein | phrog_29903 | unknown function | unknown function | 1 | 11107 | 11415 |
| YP_007674213.1 | NC_020849_p3 | hypothetical protein | phrog_25968 | unknown function | unknown function | 1 | 497 | 679 |
| YP_007674252.1 | NC_020849_p42 | ATPase | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16355 | 16915 |
| YP_007674278.1 | NC_020849_p68 | hypothetical protein | phrog_19493 | unknown function | unknown function | 1 | 35819 | 36646 |
| YP_007674221.1 | NC_020849_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2758 | 3009 |
| YP_007674266.1 | NC_020849_p56 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 25792 | 26484 |
| YP_007674263.1 | NC_020849_p53 | hypothetical protein | phrog_20260 | unknown function | unknown function | 1 | 23304 | 23576 |
| YP_007674212.1 | NC_020849_p2 | hypothetical protein | phrog_22839 | unknown function | unknown function | -1 | 149 | 301 |
| YP_007674233.1 | NC_020849_p23 | hypothetical protein | phrog_29072 | unknown function | unknown function | 1 | 7468 | 7710 |
| YP_007674228.1 | NC_020849_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4665 | 4985 |
| YP_007674220.1 | NC_020849_p10 | hypothetical protein | phrog_19759 | unknown function | unknown function | 1 | 2482 | 2748 |
| YP_007674241.1 | NC_020849_p31 | hypothetical protein | phrog_24769 | unknown function | unknown function | 1 | 11603 | 11938 |
| YP_007674227.1 | NC_020849_p17 | hypothetical protein | phrog_24521 | unknown function | unknown function | 1 | 4369 | 4668 |
| YP_007674306.1 | NC_020849_p96 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 74798 | 75487 |
| YP_007674264.1 | NC_020849_p54 | hypothetical protein | phrog_22623 | unknown function | unknown function | 1 | 23593 | 23919 |
| YP_007674267.1 | NC_020849_p57 | hypothetical protein | phrog_25446 | unknown function | unknown function | 1 | 27529 | 27888 |
| YP_007674291.1 | NC_020849_p81 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 56379 | 56921 |
| YP_007674259.1 | NC_020849_p49 | hypothetical protein | phrog_21021 | unknown function | unknown function | 1 | 21353 | 21649 |
| YP_007674265.1 | NC_020849_p55 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 23921 | 27557 |
| YP_007674246.1 | NC_020849_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13379 | 13540 |
| YP_007674296.1 | NC_020849_p86 | phosphate starvation-inducible protein | phrog_170 | PhoH-like phosphate starvation-inducible | other | 1 | 62256 | 62990 |
| YP_007674239.1 | NC_020849_p29 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10305 | 10787 |
| YP_007674282.1 | NC_020849_p72 | hypothetical protein | phrog_953 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39847 | 40308 |
| YP_007674256.1 | NC_020849_p46 | hypothetical protein | phrog_11908 | unknown function | unknown function | 1 | 18497 | 19792 |
| YP_007674255.1 | NC_020849_p45 | hypothetical protein | phrog_26125 | unknown function | unknown function | 1 | 18342 | 18500 |
| YP_007674258.1 | NC_020849_p48 | hypothetical protein | phrog_25621 | unknown function | unknown function | -1 | 20898 | 21272 |
| YP_007674231.1 | NC_020849_p21 | hypothetical protein | phrog_24006 | unknown function | unknown function | 1 | 6177 | 6401 |
| YP_007674271.1 | NC_020849_p61 | hypothetical protein | phrog_715 | MazG-like pyrophosphatase | other | 1 | 29237 | 29665 |
| YP_007674226.1 | NC_020849_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4075 | 4344 |
| YP_007674217.1 | NC_020849_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1790 | 1939 |
| YP_007674284.1 | NC_020849_p74 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 41047 | 41574 |
| YP_007674223.1 | NC_020849_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3362 | 3523 |
| YP_007674261.1 | NC_020849_p51 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21862 | 23028 |
| YP_007674280.1 | NC_020849_p70 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 38781 | 39110 |
| YP_007674309.1 | NC_020849_p99 | hypothetical protein | phrog_22839 | unknown function | unknown function | -1 | 76519 | 76671 |
| YP_007674225.1 | NC_020849_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3803 | 4075 |
| YP_007674304.1 | NC_020849_p94 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 72338 | 73045 |
| YP_007674247.1 | NC_020849_p37 | hypothetical protein | phrog_22043 | unknown function | unknown function | 1 | 13537 | 13860 |
| YP_007674303.1 | NC_020849_p93 | hypothetical protein | phrog_27367 | tail fiber protein | tail | -1 | 69495 | 72347 |
| YP_007674249.1 | NC_020849_p39 | hypothetical protein | phrog_21445 | unknown function | unknown function | 1 | 14567 | 14797 |
| YP_007674290.1 | NC_020849_p80 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 55575 | 56375 |
| YP_007674219.1 | NC_020849_p9 | hypothetical protein | phrog_19759 | unknown function | unknown function | 1 | 2215 | 2478 |
| YP_007674279.1 | NC_020849_p69 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 36659 | 38809 |
| YP_007674234.1 | NC_020849_p24 | hypothetical protein | phrog_20611 | unknown function | unknown function | 1 | 7700 | 7915 |
| YP_007674215.1 | NC_020849_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1353 | 1646 |
| YP_007674245.1 | NC_020849_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12960 | 13346 |