| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020853 |
Definition |
Loktanella phage pCB2051-A genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
56958 |
Host Name |
Loktanella sp. CB 2051 |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
76 |
%GC |
54.97 |
Number of singletons |
36 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007674941.1 | NC_020853_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38978 | 39337 |
| YP_007674934.1 | NC_020853_p37 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 33237 | 35708 |
| YP_007674915.1 | NC_020853_p18 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 12453 | 13904 |
| YP_007674959.1 | NC_020853_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47199 | 48008 |
| YP_007674955.1 | NC_020853_p58 | hypothetical protein | phrog_4786 | cysteine dioxygenase | other | -1 | 45256 | 45879 |
| YP_007674944.1 | NC_020853_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39891 | 40469 |
| YP_007674905.1 | NC_020853_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2815 | 2967 |
| YP_007674958.1 | NC_020853_p61 | hypothetical protein | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 46573 | 47202 |
| YP_007674914.1 | NC_020853_p17 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12139 | 12426 |
| YP_007674920.1 | NC_020853_p23 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 17106 | 18797 |
| YP_007674971.1 | NC_020853_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54518 | 55177 |
| YP_007674932.1 | NC_020853_p35 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 32780 | 33025 |
| YP_007674969.1 | NC_020853_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53796 | 54293 |
| YP_007674917.1 | NC_020853_p20 | hypothetical protein | phrog_141 | terminase small subunit | head and packaging | 1 | 14128 | 14709 |
| YP_007674938.1 | NC_020853_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37532 | 37756 |
| YP_007674948.1 | NC_020853_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41648 | 41905 |
| YP_007674909.1 | NC_020853_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7061 | 7477 |
| YP_007674922.1 | NC_020853_p25 | hypothetical protein | phrog_49 | head decoration | head and packaging | 1 | 20237 | 20647 |
| YP_007674927.1 | NC_020853_p30 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 23812 | 24588 |
| YP_007674945.1 | NC_020853_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40460 | 40681 |
| YP_007674970.1 | NC_020853_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54280 | 54525 |
| YP_007674954.1 | NC_020853_p57 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 44206 | 45144 |
| YP_007674968.1 | NC_020853_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53542 | 53799 |
| YP_007674937.1 | NC_020853_p40 | hypothetical protein | phrog_6368 | unknown function | unknown function | 1 | 36564 | 37535 |
| YP_007674906.1 | NC_020853_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3034 | 3741 |
| YP_007674923.1 | NC_020853_p26 | hypothetical protein | phrog_29 | major head protein | head and packaging | 1 | 20692 | 21786 |
| YP_007674908.1 | NC_020853_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6635 | 6922 |
| YP_007674940.1 | NC_020853_p43 | hypothetical protein | phrog_1224 | endolysin | head and packaging | 1 | 38100 | 38996 |
| YP_007674902.1 | NC_020853_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2173 | 2457 |
| YP_007674921.1 | NC_020853_p24 | peptidase | phrog_53 | head maturation protease | head and packaging | 1 | 18834 | 20165 |
| YP_007674943.1 | NC_020853_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39539 | 39904 |
| YP_007674910.1 | NC_020853_p13 | hypothetical protein | phrog_1048 | unknown function | unknown function | 1 | 7547 | 7882 |
| YP_007674939.1 | NC_020853_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37771 | 38103 |
| YP_007674900.1 | NC_020853_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1701 | 1922 |
| YP_007674942.1 | NC_020853_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39252 | 39542 |
| YP_007674960.1 | NC_020853_p63 | hypothetical protein | phrog_18599 | unknown function | unknown function | -1 | 47995 | 48450 |
| YP_007674935.1 | NC_020853_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35701 | 35868 |
| YP_007674967.1 | NC_020853_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53321 | 53542 |
| YP_007674931.1 | NC_020853_p34 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 31910 | 32770 |
| YP_007674903.1 | NC_020853_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2454 | 2645 |
| YP_007674963.1 | NC_020853_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49166 | 50032 |
| YP_007674964.1 | NC_020853_p67 | ribonucleoside-diphosphate reductase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 50134 | 52419 |
| YP_007674949.1 | NC_020853_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41895 | 42194 |
| YP_007674973.1 | NC_020853_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56296 | 56508 |
| YP_007674907.1 | NC_020853_p10 | hypothetical protein | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 4253 | 6610 |
| YP_007674912.1 | NC_020853_p15 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9128 | 10156 |
| YP_007674965.1 | NC_020853_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52505 | 52756 |
| YP_007674911.1 | NC_020853_p14 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 7944 | 9107 |
| YP_007674916.1 | NC_020853_p19 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 13941 | 14135 |
| YP_007674966.1 | NC_020853_p69 | hypothetical protein | phrog_33873 | unknown function | unknown function | -1 | 52756 | 53319 |
| YP_007674930.1 | NC_020853_p33 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 30177 | 31919 |
| YP_007674898.1 | NC_020853_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 178 | 423 |
| YP_007674957.1 | NC_020853_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46353 | 46562 |
| YP_007674928.1 | NC_020853_p31 | hypothetical protein | phrog_5260 | tail protein | tail | 1 | 24626 | 25078 |
| YP_007674918.1 | NC_020853_p21 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 14709 | 16796 |
| YP_007674972.1 | NC_020853_p75 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 55189 | 56136 |
| YP_007674901.1 | NC_020853_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1922 | 2173 |
| YP_007674946.1 | NC_020853_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40681 | 40893 |
| YP_007674929.1 | NC_020853_p32 | tail length tape measure protein | phrog_2335 | tail length tape measure protein | tail | 1 | 25338 | 30173 |
| YP_007674947.1 | NC_020853_p50 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 40893 | 41669 |
| YP_007674924.1 | NC_020853_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21862 | 22227 |
| YP_007674936.1 | NC_020853_p39 | hypothetical protein | phrog_7049 | tail fiber protein | tail | 1 | 35887 | 36567 |
| YP_007674950.1 | NC_020853_p53 | hypothetical protein | phrog_13898 | unknown function | unknown function | -1 | 42200 | 43060 |
| YP_007674919.1 | NC_020853_p22 | hypothetical protein | phrog_75 | head-tail adaptor Ad1 | connector | 1 | 16864 | 17106 |
| YP_007674925.1 | NC_020853_p28 | hypothetical protein | phrog_4858 | unknown function | unknown function | 1 | 22224 | 22607 |
| YP_007674962.1 | NC_020853_p65 | hypothetical protein | phrog_27185 | unknown function | unknown function | -1 | 48899 | 49153 |
| YP_007674904.1 | NC_020853_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2642 | 2818 |
| YP_007674933.1 | NC_020853_p36 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 33022 | 33237 |
| YP_007674899.1 | NC_020853_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 538 | 1704 |
| YP_007674926.1 | NC_020853_p29 | hypothetical protein | phrog_5078 | tail terminator | connector | 1 | 23202 | 23753 |
| YP_007674953.1 | NC_020853_p56 | hypothetical protein | phrog_4212 | unknown function | unknown function | -1 | 43875 | 44204 |
| YP_007674952.1 | NC_020853_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43306 | 43875 |
| YP_007674913.1 | NC_020853_p16 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10203 | 12146 |
| YP_007674956.1 | NC_020853_p59 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 45876 | 46298 |
| YP_007674961.1 | NC_020853_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48447 | 48902 |
| YP_007674951.1 | NC_020853_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43053 | 43313 |