Genomic map of Cyanophage MED4-117 (NC_020857)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020857
Definition
Cyanophage MED4-117 genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38834
Host Name
Prochlorococcus marinus MED4
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
37.24
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007675387.1 NC_020857_p58 hypothetical protein phrog_35166 unknown function unknown function -1 33448 34416
YP_007675362.1 NC_020857_p33 hypothetical protein phrog_28298 unknown function unknown function -1 17469 17675
YP_007675376.1 NC_020857_p47 hypothetical protein phrog_21865 unknown function unknown function 1 24190 24429
YP_007675375.1 NC_020857_p46 hypothetical protein phrog_30071 unknown function unknown function -1 23685 23978
YP_007675388.1 NC_020857_p59 minor tail protein phrog_18 minor tail protein tail -1 34413 34985
YP_007675378.1 NC_020857_p49 hypothetical protein phrog_650 unknown function unknown function 1 24889 25374
YP_007675337.1 NC_020857_p8 hypothetical protein phrog_477 head-tail adaptor Ad1 connector -1 2683 3243
YP_007675380.1 NC_020857_p51 hypothetical protein phrog_570 unknown function unknown function -1 26081 26728
YP_007675374.1 NC_020857_p45 hypothetical protein singleton unknown function unknown function 1 23524 23688
YP_007675342.1 NC_020857_p13 hypothetical protein phrog_31838 unknown function unknown function -1 5821 5976
YP_007675382.1 NC_020857_p53 hypothetical protein phrog_20003 unknown function unknown function -1 27092 27271
YP_007675333.1 NC_020857_p4 hypothetical protein phrog_179 tail terminator connector -1 1215 1637
YP_007675358.1 NC_020857_p29 hypothetical protein phrog_34258 unknown function unknown function -1 16464 16616
YP_007675348.1 NC_020857_p19 hypothetical protein phrog_145 portal protein head and packaging -1 9224 10573
YP_007675341.1 NC_020857_p12 hypothetical protein phrog_7595 unknown function unknown function -1 5546 5824
YP_007675371.1 NC_020857_p42 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 22358 22996
YP_007675353.1 NC_020857_p24 DNA methylase phrog_9353 unknown function unknown function -1 13830 14471
YP_007675360.1 NC_020857_p31 hypothetical protein phrog_35258 unknown function unknown function -1 16883 17224
YP_007675332.1 NC_020857_p3 hypothetical protein phrog_38229 unknown function unknown function -1 1060 1212
YP_007675355.1 NC_020857_p26 hypothetical protein singleton unknown function unknown function -1 15141 15434
YP_007675379.1 NC_020857_p50 hypothetical protein phrog_848 unknown function unknown function 1 25236 25952
YP_007675351.1 NC_020857_p22 hypothetical protein phrog_6059 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover -1 12347 13132
YP_007675368.1 NC_020857_p39 hypothetical protein phrog_34479 unknown function unknown function 1 20141 20542
YP_007675377.1 NC_020857_p48 hypothetical protein phrog_564 unknown function unknown function 1 24426 24944
YP_007675373.1 NC_020857_p44 hypothetical protein phrog_37725 unknown function unknown function 1 23220 23540
YP_007675347.1 NC_020857_p18 hypothetical protein phrog_241 head morphogenesis head and packaging -1 8153 9220
YP_007675356.1 NC_020857_p27 hypothetical protein singleton unknown function unknown function -1 15424 15909
YP_007675357.1 NC_020857_p28 hypothetical protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 15915 16364
YP_007675369.1 NC_020857_p40 exonuclease phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 20687 21502
YP_007675391.1 NC_020857_p62 hypothetical protein phrog_20784 unknown function unknown function -1 38091 38444
YP_007675349.1 NC_020857_p20 terminase phrog_2 terminase large subunit head and packaging -1 10684 12027
YP_007675392.1 NC_020857_p63 hypothetical protein singleton unknown function unknown function -1 38473 38805
YP_007675352.1 NC_020857_p23 hypothetical protein phrog_28597 unknown function unknown function -1 13129 13830
YP_007675340.1 NC_020857_p11 hypothetical protein phrog_206 head scaffolding protein head and packaging -1 4838 5509
YP_007675366.1 NC_020857_p37 hypothetical protein phrog_30520 unknown function unknown function 1 19463 19684
YP_007675359.1 NC_020857_p30 hypothetical protein phrog_35960 unknown function unknown function -1 16681 16893
YP_007675339.1 NC_020857_p10 coat protein phrog_247 major head protein head and packaging -1 3732 4769
YP_007675334.1 NC_020857_p5 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 1637 2089
YP_007675346.1 NC_020857_p17 hypothetical protein singleton unknown function unknown function -1 6934 8193
YP_007675330.1 NC_020857_p1 hypothetical protein phrog_20784 unknown function unknown function -1 229 582
YP_007675343.1 NC_020857_p14 hypothetical protein phrog_28338 unknown function unknown function -1 5973 6242
YP_007675389.1 NC_020857_p60 hypothetical protein phrog_14 minor tail protein tail -1 34985 35557
YP_007675336.1 NC_020857_p7 hypothetical protein phrog_34166 unknown function unknown function -1 2441 2686
YP_007675372.1 NC_020857_p43 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 22993 23217
YP_007675384.1 NC_020857_p55 hypothetical protein phrog_9114 unknown function unknown function -1 27633 27965
YP_007675383.1 NC_020857_p54 hypothetical protein phrog_7802 unknown function unknown function -1 27274 27609
YP_007675335.1 NC_020857_p6 hypothetical protein phrog_161 head closure Hc1 connector -1 2091 2444
YP_007675370.1 NC_020857_p41 hypothetical protein phrog_5931 unknown function unknown function 1 21366 22361
YP_007675331.1 NC_020857_p2 hypothetical protein phrog_10528 major tail protein tail -1 611 1030
YP_007675345.1 NC_020857_p16 hypothetical protein phrog_36872 unknown function unknown function -1 6746 6937
YP_007675363.1 NC_020857_p34 hypothetical protein phrog_36669 unknown function unknown function -1 17675 18679
YP_007675365.1 NC_020857_p36 hypothetical protein phrog_5643 unknown function unknown function 1 19099 19338
YP_007675386.1 NC_020857_p57 host specificity protein phrog_31 central tail fiber J tail -1 29741 33343
YP_007675361.1 NC_020857_p32 hypothetical protein phrog_336 unknown function unknown function -1 17297 17488
YP_007675338.1 NC_020857_p9 hypothetical protein phrog_18251 unknown function unknown function -1 3364 3729
YP_007675390.1 NC_020857_p61 tail tape measure protein phrog_991 tail length tape measure protein tail -1 35560 37890
YP_007675385.1 NC_020857_p56 hypothetical protein phrog_29834 unknown function unknown function -1 27962 29707
YP_007675354.1 NC_020857_p25 hypothetical protein phrog_35089 unknown function unknown function -1 14662 15135
YP_007675364.1 NC_020857_p35 hypothetical protein singleton unknown function unknown function 1 18881 19099
YP_007675344.1 NC_020857_p15 hypothetical protein phrog_38321 unknown function unknown function -1 6208 6420
YP_007675367.1 NC_020857_p38 hypothetical protein phrog_35402 unknown function unknown function 1 19677 20144
YP_007675350.1 NC_020857_p21 hypothetical protein phrog_34910 unknown function unknown function -1 12024 12347
YP_007675381.1 NC_020857_p52 hypothetical protein phrog_568 plasmid stability DNA, RNA and nucleotide metabolism -1 26729 26965