Genomic map of Cellulophaga phage phiSM (NC_020860)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020860
Definition
Cellulophaga phage phiSM genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
DB of origin
REFSEQ
Length
44557
Host Name
Cellulophaga sp. MM#3
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
33.92
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007675702.1 NC_020860_p26 hypothetical protein phrog_6 baseplate wedge subunit tail 1 22243 23418
YP_007675732.1 NC_020860_p56 hypothetical protein phrog_15829 unknown function unknown function -1 42548 43156
YP_007675688.1 NC_020860_p12 hypothetical protein phrog_10423 unknown function unknown function 1 12299 12580
YP_007675728.1 NC_020860_p52 hypothetical protein phrog_16545 ParB-like partition protein DNA, RNA and nucleotide metabolism -1 40255 40719
YP_007675711.1 NC_020860_p35 hypothetical protein phrog_3628 unknown function unknown function -1 29868 30632
YP_007675717.1 NC_020860_p41 hypothetical protein phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 33804 34532
YP_007675729.1 NC_020860_p53 hypothetical protein phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover -1 40707 41429
YP_007675718.1 NC_020860_p42 hypothetical protein singleton unknown function unknown function -1 34501 34923
YP_007675682.1 NC_020860_p6 hypothetical protein phrog_15569 unknown function unknown function 1 5596 5958
YP_007675723.1 NC_020860_p47 DNA polymerase subunit III phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 37103 38185
YP_007675706.1 NC_020860_p30 hypothetical protein singleton unknown function unknown function 1 26405 26590
YP_007675709.1 NC_020860_p33 hypothetical protein phrog_177 baseplate hub tail 1 28357 29376
YP_007675698.1 NC_020860_p22 hypothetical protein phrog_4648 unknown function unknown function 1 19201 19629
YP_007675733.1 NC_020860_p57 hypothetical protein phrog_8580 unknown function unknown function -1 43246 43431
YP_007675693.1 NC_020860_p17 hypothetical protein phrog_15308 unknown function unknown function 1 15755 16180
YP_007675689.1 NC_020860_p13 hypothetical protein phrog_10645 unknown function unknown function 1 12537 12851
YP_007675683.1 NC_020860_p7 hypothetical protein phrog_16388 virion structural protein head and packaging 1 5962 7185
YP_007675679.1 NC_020860_p3 phage terminase phrog_15 terminase large subunit head and packaging 1 1535 3580
YP_007675700.1 NC_020860_p24 phage tail tape measure protein phrog_28 tail length tape measure protein tail 1 19800 21746
YP_007675730.1 NC_020860_p54 hypothetical protein phrog_16018 unknown function unknown function -1 41439 42092
YP_007675707.1 NC_020860_p31 hypothetical protein phrog_4688 minor tail protein tail 1 26637 27149
YP_007675734.1 NC_020860_p58 GTP cyclohydrolase I phrog_2197 GTP cyclohydrolase other -1 43431 44090
YP_007675690.1 NC_020860_p14 hypothetical protein phrog_53 head maturation protease head and packaging 1 12916 14181
YP_007675721.1 NC_020860_p45 hypothetical protein phrog_16181 unknown function unknown function -1 35971 36144
YP_007675725.1 NC_020860_p49 radical SAM domain-containing protein phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover -1 38351 39067
YP_007675691.1 NC_020860_p15 hypothetical protein phrog_5204 head decoration head and packaging 1 14185 14625
YP_007675697.1 NC_020860_p21 hypothetical protein phrog_4699 tail tube protein tail 1 18725 19135
YP_007675695.1 NC_020860_p19 hypothetical protein phrog_4671 unknown function unknown function 1 16560 17156
YP_007675705.1 NC_020860_p29 hypothetical protein phrog_5221 unknown function unknown function 1 25226 26404
YP_007675687.1 NC_020860_p11 phage lysin phrog_465 endolysin lysis 1 11676 12302
YP_007675696.1 NC_020860_p20 tail protein phrog_165 tail sheath tail 1 17176 18702
YP_007675731.1 NC_020860_p55 7-cyano-7-deazaguanine reductase phrog_5949 GTP cyclohydrolase other -1 42145 42546
YP_007675684.1 NC_020860_p8 hypothetical protein phrog_10327 hydrolase other 1 7209 10493
YP_007675694.1 NC_020860_p18 hypothetical protein phrog_4598 head closure Hc1 connector 1 16181 16576
YP_007675686.1 NC_020860_p10 hypothetical protein phrog_10199 unknown function unknown function 1 11054 11689
YP_007675685.1 NC_020860_p9 hypothetical protein phrog_15401 unknown function unknown function 1 10595 10969
YP_007675720.1 NC_020860_p44 hypothetical protein phrog_15115 unknown function unknown function -1 35471 35806
YP_007675727.1 NC_020860_p51 queuosine biosynthesis protein QueC phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover -1 39535 40245
YP_007675708.1 NC_020860_p32 hypothetical protein phrog_184 baseplate hub tail 1 27146 28357
YP_007675719.1 NC_020860_p43 hypothetical protein phrog_15333 unknown function unknown function -1 34924 35478
YP_007675715.1 NC_020860_p39 hypothetical protein singleton unknown function unknown function -1 31872 32057
YP_007675701.1 NC_020860_p25 hypothetical protein phrog_180 baseplate wedge subunit tail 1 21761 22243
YP_007675710.1 NC_020860_p34 hypothetical protein phrog_5226 unknown function unknown function 1 29369 29881
YP_007675681.1 NC_020860_p5 phage portal protein phrog_21 portal protein head and packaging 1 4017 5627
YP_007675716.1 NC_020860_p40 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 32057 33709
YP_007675724.1 NC_020860_p48 hypothetical protein phrog_15235 unknown function unknown function -1 38175 38351
YP_007675713.1 NC_020860_p37 hypothetical protein phrog_14845 unknown function unknown function -1 30956 31384
YP_007675712.1 NC_020860_p36 hypothetical protein phrog_15903 unknown function unknown function -1 30705 30974
YP_007675692.1 NC_020860_p16 hypothetical protein phrog_29 major head protein head and packaging 1 14615 15703
YP_007675678.1 NC_020860_p2 hypothetical protein phrog_6645 unknown function unknown function 1 964 1392
YP_007675726.1 NC_020860_p50 6-pyruvoyl-tetrahydropterin synthase phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover -1 39051 39542
YP_007675735.1 NC_020860_p59 hypothetical protein phrog_10144 unknown function unknown function -1 44225 44380
YP_007675677.1 NC_020860_p1 hypothetical protein phrog_5193 unknown function unknown function 1 155 832
YP_007675722.1 NC_020860_p46 hypothetical protein phrog_14787 unknown function unknown function -1 36217 37116
YP_007675680.1 NC_020860_p4 hypothetical protein phrog_5196 unknown function unknown function 1 3726 4013
YP_007675714.1 NC_020860_p38 hypothetical protein singleton unknown function unknown function -1 31391 31723
YP_007675699.1 NC_020860_p23 hypothetical protein phrog_5697 unknown function unknown function 1 19614 19799
YP_007675703.1 NC_020860_p27 hypothetical protein phrog_4920 unknown function unknown function 1 23418 24179
YP_007675704.1 NC_020860_p28 hypothetical protein phrog_5194 unknown function unknown function 1 24184 25215