| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020860 |
Definition |
Cellulophaga phage phiSM genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae. |
DB of origin |
REFSEQ |
Length |
44557 |
Host Name |
Cellulophaga sp. MM#3 |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
33.92 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007675702.1 | NC_020860_p26 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 22243 | 23418 |
| YP_007675732.1 | NC_020860_p56 | hypothetical protein | phrog_15829 | unknown function | unknown function | -1 | 42548 | 43156 |
| YP_007675688.1 | NC_020860_p12 | hypothetical protein | phrog_10423 | unknown function | unknown function | 1 | 12299 | 12580 |
| YP_007675728.1 | NC_020860_p52 | hypothetical protein | phrog_16545 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 40255 | 40719 |
| YP_007675711.1 | NC_020860_p35 | hypothetical protein | phrog_3628 | unknown function | unknown function | -1 | 29868 | 30632 |
| YP_007675717.1 | NC_020860_p41 | hypothetical protein | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 33804 | 34532 |
| YP_007675729.1 | NC_020860_p53 | hypothetical protein | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 40707 | 41429 |
| YP_007675718.1 | NC_020860_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34501 | 34923 |
| YP_007675682.1 | NC_020860_p6 | hypothetical protein | phrog_15569 | unknown function | unknown function | 1 | 5596 | 5958 |
| YP_007675723.1 | NC_020860_p47 | DNA polymerase subunit III | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 37103 | 38185 |
| YP_007675706.1 | NC_020860_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26405 | 26590 |
| YP_007675709.1 | NC_020860_p33 | hypothetical protein | phrog_177 | baseplate hub | tail | 1 | 28357 | 29376 |
| YP_007675698.1 | NC_020860_p22 | hypothetical protein | phrog_4648 | unknown function | unknown function | 1 | 19201 | 19629 |
| YP_007675733.1 | NC_020860_p57 | hypothetical protein | phrog_8580 | unknown function | unknown function | -1 | 43246 | 43431 |
| YP_007675693.1 | NC_020860_p17 | hypothetical protein | phrog_15308 | unknown function | unknown function | 1 | 15755 | 16180 |
| YP_007675689.1 | NC_020860_p13 | hypothetical protein | phrog_10645 | unknown function | unknown function | 1 | 12537 | 12851 |
| YP_007675683.1 | NC_020860_p7 | hypothetical protein | phrog_16388 | virion structural protein | head and packaging | 1 | 5962 | 7185 |
| YP_007675679.1 | NC_020860_p3 | phage terminase | phrog_15 | terminase large subunit | head and packaging | 1 | 1535 | 3580 |
| YP_007675700.1 | NC_020860_p24 | phage tail tape measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 19800 | 21746 |
| YP_007675730.1 | NC_020860_p54 | hypothetical protein | phrog_16018 | unknown function | unknown function | -1 | 41439 | 42092 |
| YP_007675707.1 | NC_020860_p31 | hypothetical protein | phrog_4688 | minor tail protein | tail | 1 | 26637 | 27149 |
| YP_007675734.1 | NC_020860_p58 | GTP cyclohydrolase I | phrog_2197 | GTP cyclohydrolase | other | -1 | 43431 | 44090 |
| YP_007675690.1 | NC_020860_p14 | hypothetical protein | phrog_53 | head maturation protease | head and packaging | 1 | 12916 | 14181 |
| YP_007675721.1 | NC_020860_p45 | hypothetical protein | phrog_16181 | unknown function | unknown function | -1 | 35971 | 36144 |
| YP_007675725.1 | NC_020860_p49 | radical SAM domain-containing protein | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 38351 | 39067 |
| YP_007675691.1 | NC_020860_p15 | hypothetical protein | phrog_5204 | head decoration | head and packaging | 1 | 14185 | 14625 |
| YP_007675697.1 | NC_020860_p21 | hypothetical protein | phrog_4699 | tail tube protein | tail | 1 | 18725 | 19135 |
| YP_007675695.1 | NC_020860_p19 | hypothetical protein | phrog_4671 | unknown function | unknown function | 1 | 16560 | 17156 |
| YP_007675705.1 | NC_020860_p29 | hypothetical protein | phrog_5221 | unknown function | unknown function | 1 | 25226 | 26404 |
| YP_007675687.1 | NC_020860_p11 | phage lysin | phrog_465 | endolysin | lysis | 1 | 11676 | 12302 |
| YP_007675696.1 | NC_020860_p20 | tail protein | phrog_165 | tail sheath | tail | 1 | 17176 | 18702 |
| YP_007675731.1 | NC_020860_p55 | 7-cyano-7-deazaguanine reductase | phrog_5949 | GTP cyclohydrolase | other | -1 | 42145 | 42546 |
| YP_007675684.1 | NC_020860_p8 | hypothetical protein | phrog_10327 | hydrolase | other | 1 | 7209 | 10493 |
| YP_007675694.1 | NC_020860_p18 | hypothetical protein | phrog_4598 | head closure Hc1 | connector | 1 | 16181 | 16576 |
| YP_007675686.1 | NC_020860_p10 | hypothetical protein | phrog_10199 | unknown function | unknown function | 1 | 11054 | 11689 |
| YP_007675685.1 | NC_020860_p9 | hypothetical protein | phrog_15401 | unknown function | unknown function | 1 | 10595 | 10969 |
| YP_007675720.1 | NC_020860_p44 | hypothetical protein | phrog_15115 | unknown function | unknown function | -1 | 35471 | 35806 |
| YP_007675727.1 | NC_020860_p51 | queuosine biosynthesis protein QueC | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 39535 | 40245 |
| YP_007675708.1 | NC_020860_p32 | hypothetical protein | phrog_184 | baseplate hub | tail | 1 | 27146 | 28357 |
| YP_007675719.1 | NC_020860_p43 | hypothetical protein | phrog_15333 | unknown function | unknown function | -1 | 34924 | 35478 |
| YP_007675715.1 | NC_020860_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31872 | 32057 |
| YP_007675701.1 | NC_020860_p25 | hypothetical protein | phrog_180 | baseplate wedge subunit | tail | 1 | 21761 | 22243 |
| YP_007675710.1 | NC_020860_p34 | hypothetical protein | phrog_5226 | unknown function | unknown function | 1 | 29369 | 29881 |
| YP_007675681.1 | NC_020860_p5 | phage portal protein | phrog_21 | portal protein | head and packaging | 1 | 4017 | 5627 |
| YP_007675716.1 | NC_020860_p40 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 32057 | 33709 |
| YP_007675724.1 | NC_020860_p48 | hypothetical protein | phrog_15235 | unknown function | unknown function | -1 | 38175 | 38351 |
| YP_007675713.1 | NC_020860_p37 | hypothetical protein | phrog_14845 | unknown function | unknown function | -1 | 30956 | 31384 |
| YP_007675712.1 | NC_020860_p36 | hypothetical protein | phrog_15903 | unknown function | unknown function | -1 | 30705 | 30974 |
| YP_007675692.1 | NC_020860_p16 | hypothetical protein | phrog_29 | major head protein | head and packaging | 1 | 14615 | 15703 |
| YP_007675678.1 | NC_020860_p2 | hypothetical protein | phrog_6645 | unknown function | unknown function | 1 | 964 | 1392 |
| YP_007675726.1 | NC_020860_p50 | 6-pyruvoyl-tetrahydropterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 39051 | 39542 |
| YP_007675735.1 | NC_020860_p59 | hypothetical protein | phrog_10144 | unknown function | unknown function | -1 | 44225 | 44380 |
| YP_007675677.1 | NC_020860_p1 | hypothetical protein | phrog_5193 | unknown function | unknown function | 1 | 155 | 832 |
| YP_007675722.1 | NC_020860_p46 | hypothetical protein | phrog_14787 | unknown function | unknown function | -1 | 36217 | 37116 |
| YP_007675680.1 | NC_020860_p4 | hypothetical protein | phrog_5196 | unknown function | unknown function | 1 | 3726 | 4013 |
| YP_007675714.1 | NC_020860_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31391 | 31723 |
| YP_007675699.1 | NC_020860_p23 | hypothetical protein | phrog_5697 | unknown function | unknown function | 1 | 19614 | 19799 |
| YP_007675703.1 | NC_020860_p27 | hypothetical protein | phrog_4920 | unknown function | unknown function | 1 | 23418 | 24179 |
| YP_007675704.1 | NC_020860_p28 | hypothetical protein | phrog_5194 | unknown function | unknown function | 1 | 24184 | 25215 |