Genomic map of Rhodovulum phage RS1 (NC_020866)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020866
Definition
Rhodovulum phage RS1 genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40231
Host Name
Rhodovulum sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
62.11
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007676384.1 NC_020866_p5 hypothetical protein phrog_38010 unknown function unknown function 1 2183 2467
YP_007676427.1 NC_020866_p48 hypothetical protein phrog_569 tail length tape measure protein tail 1 28417 28749
YP_007676410.1 NC_020866_p31 hypothetical protein phrog_1244 unknown function unknown function -1 15407 15877
YP_007676412.1 NC_020866_p33 hypothetical protein singleton unknown function unknown function 1 17655 17891
YP_007676399.1 NC_020866_p20 hypothetical protein phrog_22210 unknown function unknown function 1 10254 10472
YP_007676415.1 NC_020866_p36 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 20962 21471
YP_007676407.1 NC_020866_p28 hypothetical protein phrog_736 unknown function unknown function 1 14088 14489
YP_007676388.1 NC_020866_p9 transposase phrog_296 DNA transposition protein integration and excision 1 5191 5931
YP_007676430.1 NC_020866_p51 hypothetical protein phrog_384 virion structural protein head and packaging 1 32787 33209
YP_007676422.1 NC_020866_p43 hypothetical protein phrog_38659 unknown function unknown function 1 25997 26401
YP_007676402.1 NC_020866_p23 hypothetical protein phrog_8252 unknown function unknown function 1 11312 11599
YP_007676414.1 NC_020866_p35 hypothetical protein phrog_220 minor head protein and DNA pilot head and packaging 1 19609 20895
YP_007676394.1 NC_020866_p15 hypothetical protein phrog_28202 unknown function unknown function 1 8138 8332
YP_007676428.1 NC_020866_p49 hypothetical protein phrog_680 tail length tape measure protein tail 1 28746 29090
YP_007676396.1 NC_020866_p17 DNA-binding protein HU-beta phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 9043 9309
YP_007676382.1 NC_020866_p3 hypothetical protein phrog_7669 unknown function unknown function 1 1687 1947
YP_007676424.1 NC_020866_p45 hypothetical protein phrog_209 portal protein head and packaging 1 26883 27317
YP_007676385.1 NC_020866_p6 hypothetical protein phrog_13335 unknown function unknown function 1 2457 2723
YP_007676421.1 NC_020866_p42 major head protein phrog_371 major head protein head and packaging 1 25019 25912
YP_007676409.1 NC_020866_p30 hypothetical protein phrog_426 terminase small subunit head and packaging 1 14793 15383
YP_007676404.1 NC_020866_p25 hypothetical protein phrog_836 late transcriptional activator transcription regulation 1 12194 12568
YP_007676380.1 NC_020866_p1 hypothetical protein phrog_15412 unknown function unknown function -1 388 873
YP_007676418.1 NC_020866_p39 hypothetical protein phrog_28910 unknown function unknown function -1 22939 23343
YP_007676387.1 NC_020866_p8 integrase phrog_310 transposase integration and excision 1 3014 5131
YP_007676386.1 NC_020866_p7 hypothetical protein phrog_27611 unknown function unknown function 1 2733 2987
YP_007676433.1 NC_020866_p54 tail fiber protein phrog_31 central tail fiber J tail 1 34257 37514
YP_007676397.1 NC_020866_p18 hypothetical protein phrog_23215 unknown function unknown function 1 9359 10018
YP_007676419.1 NC_020866_p40 I protein phrog_328 head maturation protease head and packaging 1 23539 24576
YP_007676426.1 NC_020866_p47 hypothetical protein phrog_290 minor tail protein tail 1 27468 28406
YP_007676431.1 NC_020866_p52 hypothetical protein phrog_396 minor tail protein tail 1 33206 33733
YP_007676406.1 NC_020866_p27 hypothetical protein phrog_873 endolysin head and packaging 1 13579 14091
YP_007676425.1 NC_020866_p46 hypothetical protein singleton unknown function unknown function 1 27314 27466
YP_007676381.1 NC_020866_p2 phage repressor phrog_4 transcriptional repressor transcription regulation -1 891 1553
YP_007676423.1 NC_020866_p44 hypothetical protein phrog_195 head-tail adaptor connector 1 26455 26883
YP_007676413.1 NC_020866_p34 hypothetical protein phrog_113 portal protein head and packaging 1 17973 19616
YP_007676392.1 NC_020866_p13 hypothetical protein phrog_31202 unknown function unknown function 1 7433 7900
YP_007676395.1 NC_020866_p16 hypothetical protein phrog_846 unknown function unknown function 1 8334 8984
YP_007676429.1 NC_020866_p50 hypothetical protein phrog_19487 tail length tape measure protein tail 1 29095 32790
YP_007676416.1 NC_020866_p37 hypothetical protein phrog_1281 unknown function unknown function 1 21671 22159
YP_007676435.1 NC_020866_p56 hypothetical protein phrog_4912 tail fiber assembly tail 1 38943 39245
YP_007676389.1 NC_020866_p10 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 5874 6530
YP_007676408.1 NC_020866_p29 hypothetical protein phrog_436 unknown function unknown function 1 14486 14791
YP_007676391.1 NC_020866_p12 hypothetical protein phrog_34198 unknown function unknown function 1 6898 7440
YP_007676398.1 NC_020866_p19 hypothetical protein phrog_34056 unknown function unknown function 1 10027 10257
YP_007676420.1 NC_020866_p41 hypothetical protein phrog_1731 virion structural protein head and packaging 1 24573 25007
YP_007676390.1 NC_020866_p11 hypothetical protein phrog_2119 unknown function unknown function 1 6527 6898
YP_007676434.1 NC_020866_p55 hypothetical protein phrog_29482 unknown function unknown function 1 37522 38955
YP_007676400.1 NC_020866_p21 hypothetical protein phrog_286 unknown function unknown function 1 10478 11098
YP_007676405.1 NC_020866_p26 hypothetical protein phrog_7 endolysin lysis 1 12672 13577
YP_007676401.1 NC_020866_p22 hypothetical protein phrog_29579 unknown function unknown function 1 11095 11322
YP_007676383.1 NC_020866_p4 hypothetical protein phrog_22979 unknown function unknown function 1 1947 2198
YP_007676393.1 NC_020866_p14 hypothetical protein phrog_19497 unknown function unknown function 1 7893 8141
YP_007676411.1 NC_020866_p32 hypothetical protein phrog_2 terminase large subunit head and packaging 1 15958 17655
YP_007676417.1 NC_020866_p38 hypothetical protein singleton unknown function unknown function 1 22667 22891
YP_007676403.1 NC_020866_p24 MT-A70 family protein phrog_359 DNA methyltransferase other 1 11592 12197
YP_007676432.1 NC_020866_p53 tail assembly protein phrog_329 minor tail protein tail 1 33730 34173