| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020866 |
Definition |
Rhodovulum phage RS1 genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
40231 |
Host Name |
Rhodovulum sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
62.11 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007676384.1 | NC_020866_p5 | hypothetical protein | phrog_38010 | unknown function | unknown function | 1 | 2183 | 2467 |
| YP_007676427.1 | NC_020866_p48 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 28417 | 28749 |
| YP_007676410.1 | NC_020866_p31 | hypothetical protein | phrog_1244 | unknown function | unknown function | -1 | 15407 | 15877 |
| YP_007676412.1 | NC_020866_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17655 | 17891 |
| YP_007676399.1 | NC_020866_p20 | hypothetical protein | phrog_22210 | unknown function | unknown function | 1 | 10254 | 10472 |
| YP_007676415.1 | NC_020866_p36 | hypothetical protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 20962 | 21471 |
| YP_007676407.1 | NC_020866_p28 | hypothetical protein | phrog_736 | unknown function | unknown function | 1 | 14088 | 14489 |
| YP_007676388.1 | NC_020866_p9 | transposase | phrog_296 | DNA transposition protein | integration and excision | 1 | 5191 | 5931 |
| YP_007676430.1 | NC_020866_p51 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 32787 | 33209 |
| YP_007676422.1 | NC_020866_p43 | hypothetical protein | phrog_38659 | unknown function | unknown function | 1 | 25997 | 26401 |
| YP_007676402.1 | NC_020866_p23 | hypothetical protein | phrog_8252 | unknown function | unknown function | 1 | 11312 | 11599 |
| YP_007676414.1 | NC_020866_p35 | hypothetical protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 19609 | 20895 |
| YP_007676394.1 | NC_020866_p15 | hypothetical protein | phrog_28202 | unknown function | unknown function | 1 | 8138 | 8332 |
| YP_007676428.1 | NC_020866_p49 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 28746 | 29090 |
| YP_007676396.1 | NC_020866_p17 | DNA-binding protein HU-beta | phrog_379 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 9043 | 9309 |
| YP_007676382.1 | NC_020866_p3 | hypothetical protein | phrog_7669 | unknown function | unknown function | 1 | 1687 | 1947 |
| YP_007676424.1 | NC_020866_p45 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 26883 | 27317 |
| YP_007676385.1 | NC_020866_p6 | hypothetical protein | phrog_13335 | unknown function | unknown function | 1 | 2457 | 2723 |
| YP_007676421.1 | NC_020866_p42 | major head protein | phrog_371 | major head protein | head and packaging | 1 | 25019 | 25912 |
| YP_007676409.1 | NC_020866_p30 | hypothetical protein | phrog_426 | terminase small subunit | head and packaging | 1 | 14793 | 15383 |
| YP_007676404.1 | NC_020866_p25 | hypothetical protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 12194 | 12568 |
| YP_007676380.1 | NC_020866_p1 | hypothetical protein | phrog_15412 | unknown function | unknown function | -1 | 388 | 873 |
| YP_007676418.1 | NC_020866_p39 | hypothetical protein | phrog_28910 | unknown function | unknown function | -1 | 22939 | 23343 |
| YP_007676387.1 | NC_020866_p8 | integrase | phrog_310 | transposase | integration and excision | 1 | 3014 | 5131 |
| YP_007676386.1 | NC_020866_p7 | hypothetical protein | phrog_27611 | unknown function | unknown function | 1 | 2733 | 2987 |
| YP_007676433.1 | NC_020866_p54 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 34257 | 37514 |
| YP_007676397.1 | NC_020866_p18 | hypothetical protein | phrog_23215 | unknown function | unknown function | 1 | 9359 | 10018 |
| YP_007676419.1 | NC_020866_p40 | I protein | phrog_328 | head maturation protease | head and packaging | 1 | 23539 | 24576 |
| YP_007676426.1 | NC_020866_p47 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 27468 | 28406 |
| YP_007676431.1 | NC_020866_p52 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 33206 | 33733 |
| YP_007676406.1 | NC_020866_p27 | hypothetical protein | phrog_873 | endolysin | head and packaging | 1 | 13579 | 14091 |
| YP_007676425.1 | NC_020866_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27314 | 27466 |
| YP_007676381.1 | NC_020866_p2 | phage repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 891 | 1553 |
| YP_007676423.1 | NC_020866_p44 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 26455 | 26883 |
| YP_007676413.1 | NC_020866_p34 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 17973 | 19616 |
| YP_007676392.1 | NC_020866_p13 | hypothetical protein | phrog_31202 | unknown function | unknown function | 1 | 7433 | 7900 |
| YP_007676395.1 | NC_020866_p16 | hypothetical protein | phrog_846 | unknown function | unknown function | 1 | 8334 | 8984 |
| YP_007676429.1 | NC_020866_p50 | hypothetical protein | phrog_19487 | tail length tape measure protein | tail | 1 | 29095 | 32790 |
| YP_007676416.1 | NC_020866_p37 | hypothetical protein | phrog_1281 | unknown function | unknown function | 1 | 21671 | 22159 |
| YP_007676435.1 | NC_020866_p56 | hypothetical protein | phrog_4912 | tail fiber assembly | tail | 1 | 38943 | 39245 |
| YP_007676389.1 | NC_020866_p10 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 5874 | 6530 |
| YP_007676408.1 | NC_020866_p29 | hypothetical protein | phrog_436 | unknown function | unknown function | 1 | 14486 | 14791 |
| YP_007676391.1 | NC_020866_p12 | hypothetical protein | phrog_34198 | unknown function | unknown function | 1 | 6898 | 7440 |
| YP_007676398.1 | NC_020866_p19 | hypothetical protein | phrog_34056 | unknown function | unknown function | 1 | 10027 | 10257 |
| YP_007676420.1 | NC_020866_p41 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | 1 | 24573 | 25007 |
| YP_007676390.1 | NC_020866_p11 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 6527 | 6898 |
| YP_007676434.1 | NC_020866_p55 | hypothetical protein | phrog_29482 | unknown function | unknown function | 1 | 37522 | 38955 |
| YP_007676400.1 | NC_020866_p21 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 10478 | 11098 |
| YP_007676405.1 | NC_020866_p26 | hypothetical protein | phrog_7 | endolysin | lysis | 1 | 12672 | 13577 |
| YP_007676401.1 | NC_020866_p22 | hypothetical protein | phrog_29579 | unknown function | unknown function | 1 | 11095 | 11322 |
| YP_007676383.1 | NC_020866_p4 | hypothetical protein | phrog_22979 | unknown function | unknown function | 1 | 1947 | 2198 |
| YP_007676393.1 | NC_020866_p14 | hypothetical protein | phrog_19497 | unknown function | unknown function | 1 | 7893 | 8141 |
| YP_007676411.1 | NC_020866_p32 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | 1 | 15958 | 17655 |
| YP_007676417.1 | NC_020866_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22667 | 22891 |
| YP_007676403.1 | NC_020866_p24 | MT-A70 family protein | phrog_359 | DNA methyltransferase | other | 1 | 11592 | 12197 |
| YP_007676432.1 | NC_020866_p53 | tail assembly protein | phrog_329 | minor tail protein | tail | 1 | 33730 | 34173 |