Genomic map of Synechococcus phage S-RIP1 (NC_020867)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020867
Definition
Synechococcus phage S-RIP1 genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Kajamvirus; Synechococcus virus SRIP1.
DB of origin
REFSEQ
Length
44892
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
42.92
Number of singletons
15
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007676458.1 NC_020867_p23 hypothetical protein singleton unknown function unknown function 1 23255 23443
YP_007676473.1 NC_020867_p38 hypothetical protein phrog_18695 unknown function unknown function 1 31693 31854
YP_007676480.1 NC_020867_p45 hypothetical protein singleton unknown function unknown function 1 38061 38543
YP_007676460.1 NC_020867_p25 hypothetical protein singleton unknown function unknown function 1 23605 23793
YP_007676440.1 NC_020867_p5 hypothetical protein phrog_90 endolysin lysis 1 5977 8340
YP_007676463.1 NC_020867_p28 hypothetical protein phrog_7365 unknown function unknown function 1 24584 24808
YP_007676455.1 NC_020867_p20 hypothetical protein singleton unknown function unknown function 1 18648 19634
YP_007676467.1 NC_020867_p32 hypothetical protein singleton unknown function unknown function 1 26043 26198
YP_007676461.1 NC_020867_p26 hypothetical protein phrog_734 unknown function unknown function 1 24003 24224
YP_007676457.1 NC_020867_p22 DNA maturase beta subunit phrog_38 terminase large subunit head and packaging 1 20140 21828
YP_007676469.1 NC_020867_p34 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 29062 29625
YP_007676468.1 NC_020867_p33 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 26264 28606
YP_007676445.1 NC_020867_p10 hypothetical protein phrog_19195 virion structural protein head and packaging 1 14047 15435
YP_007676489.1 NC_020867_p54 hypothetical protein singleton unknown function unknown function 1 43720 43941
YP_007676479.1 NC_020867_p44 hypothetical protein phrog_4970 unknown function unknown function 1 37882 38064
YP_007676459.1 NC_020867_p24 hypothetical protein singleton unknown function unknown function 1 23456 23605
YP_007676443.1 NC_020867_p8 hypothetical protein singleton unknown function unknown function 1 12349 13839
YP_007676449.1 NC_020867_p14 hypothetical protein phrog_650 unknown function unknown function 1 16585 16947
YP_007676464.1 NC_020867_p29 hypothetical protein singleton unknown function unknown function 1 24878 25222
YP_007676448.1 NC_020867_p13 hypothetical protein phrog_21865 unknown function unknown function 1 16425 16601
YP_007676437.1 NC_020867_p2 tail tube A phrog_446 tail protein tail 1 1175 2059
YP_007676452.1 NC_020867_p17 hypothetical protein phrog_891 terminase small subunit head and packaging 1 17612 17860
YP_007676472.1 NC_020867_p37 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 30132 31715
YP_007676490.1 NC_020867_p55 major capsid protein phrog_27239 major head protein head and packaging 1 44404 44892
YP_007676451.1 NC_020867_p16 hypothetical protein phrog_12220 unknown function unknown function 1 17386 17619
YP_007676474.1 NC_020867_p39 hypothetical protein phrog_32006 unknown function unknown function 1 31851 32192
YP_007676470.1 NC_020867_p35 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 29625 29978
YP_007676462.1 NC_020867_p27 hypothetical protein phrog_7365 unknown function unknown function 1 24297 24539
YP_007676454.1 NC_020867_p19 hypothetical protein singleton unknown function unknown function 1 18406 18639
YP_007676485.1 NC_020867_p50 hypothetical protein phrog_512 unknown function unknown function 1 41340 41855
YP_007676487.1 NC_020867_p52 photosystem II protein D1 phrog_182 photosystem II D1 moron, auxiliary metabolic gene and host takeover 1 42244 43320
YP_007676471.1 NC_020867_p36 hypothetical protein phrog_18637 unknown function unknown function 1 29975 30178
YP_007676436.1 NC_020867_p1 capsid protein phrog_267 major head protein head and packaging 1 1 1080
YP_007676447.1 NC_020867_p12 hypothetical protein phrog_9426 unknown function unknown function 1 16021 16458
YP_007676441.1 NC_020867_p6 hypothetical protein singleton unknown function unknown function 1 8349 9140
YP_007676477.1 NC_020867_p42 ribonucleotide reductase domain-containing protein phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 35785 37176
YP_007676483.1 NC_020867_p48 hypothetical protein phrog_10346 unknown function unknown function 1 40974 41255
YP_007676466.1 NC_020867_p31 hypothetical protein phrog_9569 unknown function unknown function 1 25739 26062
YP_007676439.1 NC_020867_p4 hypothetical protein singleton unknown function unknown function 1 5603 5887
YP_007676442.1 NC_020867_p7 hypothetical protein phrog_6651 internal virion protein head and packaging 1 9143 12346
YP_007676453.1 NC_020867_p18 hypothetical protein phrog_2214 HNH endonuclease DNA, RNA and nucleotide metabolism 1 18076 18405
YP_007676481.1 NC_020867_p46 hypothetical protein phrog_1052 head assembly head and packaging 1 40133 40780
YP_007676450.1 NC_020867_p15 hypothetical protein phrog_1755 unknown function unknown function 1 17103 17393
YP_007676444.1 NC_020867_p9 hypothetical protein singleton unknown function unknown function 1 13856 14044
YP_007676456.1 NC_020867_p21 hypothetical protein phrog_36777 unknown function unknown function 1 19667 20059
YP_007676478.1 NC_020867_p43 hypothetical protein phrog_6799 ribonucleotide reductase class Ia beta subunit DNA, RNA and nucleotide metabolism 1 37194 37889
YP_007676484.1 NC_020867_p49 hypothetical protein phrog_16028 unknown function unknown function 1 41258 41419
YP_007676488.1 NC_020867_p53 hypothetical protein singleton unknown function unknown function 1 43323 43508
YP_007676476.1 NC_020867_p41 hypothetical protein phrog_671 nucleotide pyrophosphohydrolase other 1 35445 35801
YP_007676438.1 NC_020867_p3 hypothetical protein phrog_20153 unknown function unknown function 1 4592 5602
YP_007676446.1 NC_020867_p11 hypothetical protein phrog_7802 unknown function unknown function 1 15520 15837
YP_007676482.1 NC_020867_p47 hypothetical protein phrog_178 high light inducible protein other 1 40780 40974
YP_007676475.1 NC_020867_p40 hypothetical protein phrog_2255 HNH endonuclease DNA, RNA and nucleotide metabolism 1 34957 35292
YP_007676486.1 NC_020867_p51 hypothetical protein phrog_417 unknown function unknown function 1 41852 42193
YP_007676465.1 NC_020867_p30 hypothetical protein singleton unknown function unknown function 1 25440 25631