Genomic map of Cyanophage SS120-1 (NC_020872)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020872
Definition
Cyanophage SS120-1 genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Banchanvirus; Prochlorococcus virus SS120-1.
DB of origin
REFSEQ
Length
46997
Host Name
Prochlorococcus marinus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
40.49
Number of singletons
14
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007676867.1 NC_020872_p21 hypothetical protein phrog_1755 unknown function unknown function -1 12529 12861
YP_007676853.1 NC_020872_p7 hypothetical protein singleton unknown function unknown function -1 5041 5259
YP_007676847.1 NC_020872_p1 ssDNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 34 615
YP_007676873.1 NC_020872_p27 hypothetical protein singleton unknown function unknown function -1 15997 16383
YP_007676856.1 NC_020872_p10 DNA primase phrog_7245 anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 5851 6834
YP_007676850.1 NC_020872_p4 MarR family protein phrog_9665 transcriptional regulator transcription regulation -1 2051 2419
YP_007676898.1 NC_020872_p52 ssDNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 46535 46997
YP_007676879.1 NC_020872_p33 polyketide synthase phrog_308 internal virion protein head and packaging -1 30224 30685
YP_007676895.1 NC_020872_p49 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 44472 46052
YP_007676890.1 NC_020872_p44 hypothetical protein phrog_671 nucleotide pyrophosphohydrolase other -1 40881 41270
YP_007676882.1 NC_020872_p36 major capsid protein phrog_267 major head protein head and packaging -1 34112 35098
YP_007676865.1 NC_020872_p19 hypothetical protein phrog_2738 unknown function unknown function -1 11972 12133
YP_007676887.1 NC_020872_p41 hypothetical protein phrog_4970 unknown function unknown function -1 38551 38739
YP_007676860.1 NC_020872_p14 DNA packaging protein phrog_38 terminase large subunit head and packaging -1 8888 10624
YP_007676858.1 NC_020872_p12 hypothetical protein singleton unknown function unknown function -1 7725 7898
YP_007676886.1 NC_020872_p40 hypothetical protein phrog_13568 unknown function unknown function -1 38262 38558
YP_007676888.1 NC_020872_p42 hypothetical protein phrog_6799 ribonucleotide reductase class Ia beta subunit DNA, RNA and nucleotide metabolism -1 38732 39454
YP_007676864.1 NC_020872_p18 hypothetical protein phrog_891 terminase small subunit head and packaging -1 11728 11958
YP_007676893.1 NC_020872_p47 endonuclease VII phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism -1 42363 42779
YP_007676851.1 NC_020872_p5 hypothetical protein phrog_24878 unknown function unknown function -1 2524 2685
YP_007676868.1 NC_020872_p22 hypothetical protein phrog_650 unknown function unknown function -1 13044 13400
YP_007676871.1 NC_020872_p25 hypothetical protein singleton unknown function unknown function -1 14666 15382
YP_007676877.1 NC_020872_p31 hypothetical protein phrog_19560 virion structural protein head and packaging -1 26986 29541
YP_007676881.1 NC_020872_p35 tail tube A phrog_446 tail protein tail -1 33436 33933
YP_007676891.1 NC_020872_p45 hypothetical protein phrog_236 nucleotide kinase other -1 41255 41482
YP_007676849.1 NC_020872_p3 integrase phrog_1 integrase integration and excision -1 1188 2054
YP_007676866.1 NC_020872_p20 hypothetical protein singleton unknown function unknown function -1 12138 12455
YP_007676894.1 NC_020872_p48 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 42700 44472
YP_007676855.1 NC_020872_p9 hypothetical protein singleton unknown function unknown function -1 5566 5850
YP_007676859.1 NC_020872_p13 hypothetical protein singleton unknown function unknown function -1 8194 8340
YP_007676896.1 NC_020872_p50 hypothetical protein singleton unknown function unknown function -1 46024 46188
YP_007676857.1 NC_020872_p11 hypothetical protein singleton unknown function unknown function -1 7421 7627
YP_007676869.1 NC_020872_p23 hypothetical protein phrog_9426 unknown function unknown function -1 13653 14072
YP_007676884.1 NC_020872_p38 hypothetical protein singleton unknown function unknown function -1 36447 36701
YP_007676852.1 NC_020872_p6 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism -1 2708 4759
YP_007676885.1 NC_020872_p39 head to tail connector phrog_449 head-tail adaptor connector -1 36622 38262
YP_007676874.1 NC_020872_p28 hypothetical protein phrog_19943 virion structural protein head and packaging -1 16531 18876
YP_007676878.1 NC_020872_p32 hypothetical protein phrog_15746 internal virion protein head and packaging -1 29544 30242
YP_007676897.1 NC_020872_p51 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism -1 46185 46535
YP_007676889.1 NC_020872_p43 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 39454 40884
YP_007676876.1 NC_020872_p30 internal virion protein phrog_6651 internal virion protein head and packaging -1 21513 26936
YP_007676883.1 NC_020872_p37 scaffolding protein phrog_1052 head assembly head and packaging -1 35613 36443
YP_007676862.1 NC_020872_p16 HNH endonuclease phrog_2214 HNH endonuclease DNA, RNA and nucleotide metabolism -1 11112 11411
YP_007676863.1 NC_020872_p17 hypothetical protein phrog_6437 unknown function unknown function -1 11435 11728
YP_007676875.1 NC_020872_p29 hypothetical protein phrog_13518 unknown function unknown function -1 18878 21502
YP_007676861.1 NC_020872_p15 hypothetical protein singleton unknown function unknown function -1 10628 11149
YP_007676870.1 NC_020872_p24 C1q domain-containing protein phrog_15750 unknown function unknown function -1 14076 14663
YP_007676892.1 NC_020872_p46 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 41645 42382
YP_007676872.1 NC_020872_p26 hypothetical protein singleton unknown function unknown function -1 15349 15993
YP_007676854.1 NC_020872_p8 hypothetical protein singleton unknown function unknown function -1 5256 5537
YP_007676880.1 NC_020872_p34 tail tubular protein B phrog_457 tail protein tail -1 30689 33433
YP_007676848.1 NC_020872_p2 hypothetical protein singleton unknown function unknown function -1 768 917