Genomic map of Prochlorococcus phage P-SSP3 (NC_020874)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020874
Definition
Prochlorococcus phage P-SSP3 genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Tritonvirus; Prochlorococcus virus PSSP3.
DB of origin
REFSEQ
Length
46198
Host Name
Prochlorococcus marinus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
37.94
Number of singletons
6
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007677183.1 NC_020874_p47 hypothetical protein phrog_25438 unknown function unknown function -1 42911 43150
YP_007677145.1 NC_020874_p9 hypothetical protein phrog_650 unknown function unknown function -1 5836 6198
YP_007677186.1 NC_020874_p50 hypothetical protein phrog_33278 unknown function unknown function -1 43695 44021
YP_007677161.1 NC_020874_p25 major capsid protein phrog_267 major head protein head and packaging -1 24016 25329
YP_007677143.1 NC_020874_p7 hypothetical protein phrog_891 terminase small subunit head and packaging -1 4868 5113
YP_007677173.1 NC_020874_p37 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 32789 33553
YP_007677149.1 NC_020874_p13 hypothetical protein phrog_9942 tail fiber protein tail -1 6989 8719
YP_007677139.1 NC_020874_p3 DNA maturase beta subunit phrog_38 terminase large subunit head and packaging -1 1344 3077
YP_007677172.1 NC_020874_p36 hypothetical protein phrog_236 nucleotide kinase other -1 32459 32677
YP_007677179.1 NC_020874_p43 hypothetical protein phrog_21680 unknown function unknown function -1 41940 42104
YP_007677148.1 NC_020874_p12 hypothetical protein phrog_20003 unknown function unknown function -1 6800 6979
YP_007677150.1 NC_020874_p14 hypothetical protein singleton unknown function unknown function -1 8719 9111
YP_007677144.1 NC_020874_p8 hypothetical protein phrog_1755 unknown function unknown function -1 5192 5902
YP_007677187.1 NC_020874_p51 hypothetical protein phrog_2554 unknown function unknown function -1 44113 44802
YP_007677138.1 NC_020874_p2 hypothetical protein phrog_16742 unknown function unknown function -1 928 1188
YP_007677142.1 NC_020874_p6 hypothetical protein phrog_6437 unknown function unknown function -1 4651 4887
YP_007677157.1 NC_020874_p21 hypothetical protein phrog_17835 unknown function unknown function -1 19835 20008
YP_007677152.1 NC_020874_p16 hypothetical protein phrog_13518 unknown function unknown function -1 9545 12583
YP_007677175.1 NC_020874_p39 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 37298 37873
YP_007677166.1 NC_020874_p30 capsid assembly protein phrog_1052 head assembly head and packaging -1 27580 28374
YP_007677140.1 NC_020874_p4 hypothetical protein phrog_33051 unknown function unknown function -1 3095 4276
YP_007677156.1 NC_020874_p20 hypothetical protein phrog_308 internal virion protein head and packaging -1 19387 19842
YP_007677180.1 NC_020874_p44 hypothetical protein phrog_9569 unknown function unknown function -1 42101 42415
YP_007677147.1 NC_020874_p11 hypothetical protein phrog_9426 unknown function unknown function -1 6463 6843
YP_007677185.1 NC_020874_p49 hypothetical protein singleton unknown function unknown function -1 43418 43732
YP_007677188.1 NC_020874_p52 hypothetical protein phrog_7365 unknown function unknown function -1 44805 45128
YP_007677178.1 NC_020874_p42 hypothetical protein singleton unknown function unknown function -1 41712 41888
YP_007677184.1 NC_020874_p48 hypothetical protein phrog_36314 unknown function unknown function -1 43147 43305
YP_007677141.1 NC_020874_p5 hypothetical protein phrog_2214 HNH endonuclease DNA, RNA and nucleotide metabolism -1 4322 4654
YP_007677162.1 NC_020874_p26 hypothetical protein phrog_28543 unknown function unknown function -1 25634 25831
YP_007677146.1 NC_020874_p10 hypothetical protein singleton unknown function unknown function -1 6195 6365
YP_007677137.1 NC_020874_p1 transaldolase phrog_440 transaldolase other -1 214 858
YP_007677159.1 NC_020874_p23 tail tubular protein phrog_446 tail protein tail -1 22934 23551
YP_007677158.1 NC_020874_p22 tail tubular protein phrog_457 tail protein tail -1 20001 22934
YP_007677170.1 NC_020874_p34 hypothetical protein phrog_6799 ribonucleotide reductase class Ia beta subunit DNA, RNA and nucleotide metabolism -1 30377 31090
YP_007677160.1 NC_020874_p24 hypothetical protein phrog_35130 unknown function unknown function -1 23556 23975
YP_007677151.1 NC_020874_p15 hypothetical protein singleton unknown function unknown function -1 9111 9545
YP_007677163.1 NC_020874_p27 photosystem II protein D1 phrog_182 photosystem II D1 moron, auxiliary metabolic gene and host takeover -1 25828 26910
YP_007677171.1 NC_020874_p35 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 31087 32493
YP_007677182.1 NC_020874_p46 hypothetical protein phrog_23048 unknown function unknown function -1 42732 42914
YP_007677174.1 NC_020874_p38 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism -1 36954 37298
YP_007677167.1 NC_020874_p31 head-tail connector protein phrog_449 head-tail adaptor connector -1 28377 29942
YP_007677176.1 NC_020874_p40 integrase phrog_1 integrase integration and excision -1 40483 41391
YP_007677181.1 NC_020874_p45 hypothetical protein phrog_30072 unknown function unknown function -1 42412 42564
YP_007677164.1 NC_020874_p28 hypothetical protein phrog_417 unknown function unknown function -1 26911 27270
YP_007677189.1 NC_020874_p53 transaldolase singleton unknown function unknown function -1 45907 46198
YP_007677165.1 NC_020874_p29 hgh-light inducible protein phrog_178 high light inducible protein other -1 27333 27524
YP_007677177.1 NC_020874_p41 hypothetical protein phrog_9665 transcriptional regulator transcription regulation -1 41384 41752
YP_007677153.1 NC_020874_p17 hypothetical protein phrog_6651 internal virion protein head and packaging -1 12624 16688
YP_007677155.1 NC_020874_p19 hypothetical protein phrog_19322 unknown function unknown function -1 18837 19331
YP_007677154.1 NC_020874_p18 hypothetical protein phrog_36240 unknown function unknown function -1 16707 18830
YP_007677168.1 NC_020874_p32 hypothetical protein phrog_13568 unknown function unknown function -1 29942 30217
YP_007677169.1 NC_020874_p33 hypothetical protein phrog_4970 unknown function unknown function -1 30217 30408