| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_020876 |
Definition |
Mycobacterium phage First, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53028 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
63.42 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007677467.1 | NC_020876_p58 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38224 | 38547 |
| YP_007677438.1 | NC_020876_p29 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 22516 | 22857 |
| YP_007677487.1 | NC_020876_p78 | hypothetical protein | phrog_4569 | unknown function | unknown function | -1 | 46103 | 46357 |
| YP_007677429.1 | NC_020876_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14319 | 14654 |
| YP_007677491.1 | NC_020876_p82 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 47176 | 47298 |
| YP_007677423.1 | NC_020876_p14 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11599 | 12150 |
| YP_007677411.1 | NC_020876_p2 | hypothetical protein | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1591 | 2184 |
| YP_007677482.1 | NC_020876_p73 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43466 | 44362 |
| YP_007677421.1 | NC_020876_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9230 | 10690 |
| YP_007677492.1 | NC_020876_p83 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47298 | 47621 |
| YP_007677426.1 | NC_020876_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13386 | 13763 |
| YP_007677454.1 | NC_020876_p45 | hypothetical protein | phrog_3812 | unknown function | unknown function | -1 | 31501 | 31689 |
| YP_007677434.1 | NC_020876_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16642 | 19185 |
| YP_007677475.1 | NC_020876_p66 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41087 | 41317 |
| YP_007677440.1 | NC_020876_p31 | hypothetical protein | phrog_2570 | unknown function | unknown function | 1 | 25337 | 25531 |
| YP_007677449.1 | NC_020876_p40 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 28571 | 28870 |
| YP_007677470.1 | NC_020876_p61 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39081 | 39473 |
| YP_007677430.1 | NC_020876_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14664 | 15095 |
| YP_007677478.1 | NC_020876_p69 | hypothetical protein | phrog_12205 | unknown function | unknown function | -1 | 42609 | 42737 |
| YP_007677464.1 | NC_020876_p55 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36543 | 37304 |
| YP_007677431.1 | NC_020876_p22 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15114 | 15710 |
| YP_007677461.1 | NC_020876_p52 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34107 | 36164 |
| YP_007677442.1 | NC_020876_p33 | ParB | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 26715 | 26993 |
| YP_007677437.1 | NC_020876_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22076 | 22519 |
| YP_007677410.1 | NC_020876_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 569 | 1336 |
| YP_007677500.1 | NC_020876_p91 | hypothetical protein | phrog_8476 | unknown function | unknown function | -1 | 50042 | 50335 |
| YP_007677483.1 | NC_020876_p74 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44359 | 44772 |
| YP_007677457.1 | NC_020876_p48 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32308 | 32517 |
| YP_007677503.1 | NC_020876_p94 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51372 | 51452 |
| YP_007677443.1 | NC_020876_p34 | hypothetical protein | phrog_6992 | unknown function | unknown function | -1 | 27171 | 27341 |
| YP_007677502.1 | NC_020876_p93 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 50631 | 51341 |
| YP_007677476.1 | NC_020876_p67 | HTH binding protein | phrog_9069 | unknown function | unknown function | -1 | 41465 | 41764 |
| YP_007677498.1 | NC_020876_p89 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49678 | 49845 |
| YP_007677486.1 | NC_020876_p77 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 45943 | 46101 |
| YP_007677439.1 | NC_020876_p30 | minor tail subunit | phrog_737 | minor tail protein | tail | 1 | 22858 | 25263 |
| YP_007677450.1 | NC_020876_p41 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 28870 | 29103 |
| YP_007677420.1 | NC_020876_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7443 | 9233 |
| YP_007677458.1 | NC_020876_p49 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 32510 | 32758 |
| YP_007677494.1 | NC_020876_p85 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48376 | 48510 |
| YP_007677419.1 | NC_020876_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6443 | 7420 |
| YP_007677504.1 | NC_020876_p95 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51477 | 51767 |
| YP_007677485.1 | NC_020876_p76 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 45638 | 45805 |
| YP_007677497.1 | NC_020876_p88 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49328 | 49681 |
| YP_007677481.1 | NC_020876_p72 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43193 | 43417 |
| YP_007677477.1 | NC_020876_p68 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41792 | 42598 |
| YP_007677493.1 | NC_020876_p84 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 47618 | 48376 |
| YP_007677418.1 | NC_020876_p9 | holin | phrog_526 | holin | lysis | 1 | 5985 | 6446 |
| YP_007677459.1 | NC_020876_p50 | ThyX-like protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32760 | 33488 |
| YP_007677463.1 | NC_020876_p54 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36364 | 36546 |
| YP_007677417.1 | NC_020876_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 4690 | 5988 |
| YP_007677453.1 | NC_020876_p44 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 31151 | 31504 |
| YP_007677416.1 | NC_020876_p7 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 4532 | 4690 |
| YP_007677465.1 | NC_020876_p56 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 37301 | 37453 |
| YP_007677489.1 | NC_020876_p80 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 46671 | 46943 |
| YP_007677452.1 | NC_020876_p43 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29355 | 31142 |
| YP_007677436.1 | NC_020876_p27 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 20226 | 21998 |
| YP_007677422.1 | NC_020876_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10720 | 11583 |
| YP_007677473.1 | NC_020876_p64 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 40141 | 40254 |
| YP_007677415.1 | NC_020876_p6 | structural protein | phrog_1260 | minor tail protein | tail | 1 | 3375 | 4340 |
| YP_007677479.1 | NC_020876_p70 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42734 | 42973 |
| YP_007677433.1 | NC_020876_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15760 | 16230 |
| YP_007677495.1 | NC_020876_p86 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 48521 | 48829 |
| YP_007677469.1 | NC_020876_p60 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38621 | 39106 |
| YP_007677413.1 | NC_020876_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2483 | 2779 |
| YP_007677462.1 | NC_020876_p53 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 36164 | 36367 |
| YP_007677455.1 | NC_020876_p46 | hypothetical protein | phrog_11816 | unknown function | unknown function | -1 | 31689 | 31889 |
| YP_007677460.1 | NC_020876_p51 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33565 | 34110 |
| YP_007677499.1 | NC_020876_p90 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 49842 | 50042 |
| YP_007677441.1 | NC_020876_p32 | ParA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 26162 | 26722 |
| YP_007677446.1 | NC_020876_p37 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 27748 | 28125 |
| YP_007677424.1 | NC_020876_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12180 | 13136 |
| YP_007677474.1 | NC_020876_p65 | esterase/lipase | phrog_789 | esterase/lipase | other | -1 | 40251 | 41090 |
| YP_007677456.1 | NC_020876_p47 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31889 | 32311 |
| YP_007677428.1 | NC_020876_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13951 | 14319 |
| YP_007677496.1 | NC_020876_p87 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 48882 | 49307 |
| YP_007677471.1 | NC_020876_p62 | hypothetical protein | phrog_1370 | unknown function | unknown function | -1 | 39542 | 39676 |
| YP_007677425.1 | NC_020876_p16 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 13206 | 13382 |
| YP_007677444.1 | NC_020876_p35 | hypothetical protein | phrog_13926 | unknown function | unknown function | -1 | 27338 | 27556 |
| YP_007677490.1 | NC_020876_p81 | hypothetical protein | phrog_3351 | unknown function | unknown function | -1 | 46940 | 47167 |
| YP_007677480.1 | NC_020876_p71 | hypothetical protein | phrog_666 | unknown function | unknown function | -1 | 43002 | 43196 |
| YP_007677435.1 | NC_020876_p26 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 19219 | 20229 |
| YP_007677432.1 | NC_020876_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15760 | 16652 |
| YP_007677488.1 | NC_020876_p79 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 46357 | 46674 |
| YP_007677447.1 | NC_020876_p38 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 28103 | 28390 |
| YP_007677414.1 | NC_020876_p5 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 2818 | 3288 |
| YP_007677412.1 | NC_020876_p3 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 2181 | 2480 |
| YP_007677472.1 | NC_020876_p63 | endo VII protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39702 | 40175 |
| YP_007677468.1 | NC_020876_p59 | hypothetical protein | phrog_2264 | unknown function | unknown function | -1 | 38544 | 38621 |
| YP_007677445.1 | NC_020876_p36 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 27566 | 27751 |
| YP_007677484.1 | NC_020876_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44828 | 45400 |
| YP_007677466.1 | NC_020876_p57 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37457 | 38227 |
| YP_007677427.1 | NC_020876_p18 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 13760 | 13954 |
| YP_007677448.1 | NC_020876_p39 | hypothetical protein | phrog_12687 | unknown function | unknown function | -1 | 28387 | 28587 |
| YP_007677451.1 | NC_020876_p42 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29100 | 29321 |
| YP_007677501.1 | NC_020876_p92 | hypothetical protein | phrog_3207 | unknown function | unknown function | -1 | 50335 | 50622 |