Genomic map of Mycobacterium phage First (NC_020876)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020876
Definition
Mycobacterium phage First, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
53028
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
95
%GC
63.42
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007677467.1 NC_020876_p58 hypothetical protein phrog_474 phosphofructokinase other -1 38224 38547
YP_007677438.1 NC_020876_p29 hypothetical protein phrog_404 minor tail protein tail 1 22516 22857
YP_007677487.1 NC_020876_p78 hypothetical protein phrog_4569 unknown function unknown function -1 46103 46357
YP_007677429.1 NC_020876_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14319 14654
YP_007677491.1 NC_020876_p82 hypothetical protein phrog_1477 unknown function unknown function -1 47176 47298
YP_007677423.1 NC_020876_p14 scaffold protein phrog_233 head scaffolding protein head and packaging 1 11599 12150
YP_007677411.1 NC_020876_p2 hypothetical protein phrog_3895 ADP-ribosyltransferase exoenzyme toxin moron, auxiliary metabolic gene and host takeover 1 1591 2184
YP_007677482.1 NC_020876_p73 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43466 44362
YP_007677421.1 NC_020876_p12 portal protein phrog_104 portal protein head and packaging 1 9230 10690
YP_007677492.1 NC_020876_p83 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47298 47621
YP_007677426.1 NC_020876_p17 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13386 13763
YP_007677454.1 NC_020876_p45 hypothetical protein phrog_3812 unknown function unknown function -1 31501 31689
YP_007677434.1 NC_020876_p25 tape measure protein phrog_305 tail length tape measure protein tail 1 16642 19185
YP_007677475.1 NC_020876_p66 hypothetical protein phrog_397 unknown function unknown function -1 41087 41317
YP_007677440.1 NC_020876_p31 hypothetical protein phrog_2570 unknown function unknown function 1 25337 25531
YP_007677449.1 NC_020876_p40 hypothetical protein phrog_3771 unknown function unknown function -1 28571 28870
YP_007677470.1 NC_020876_p61 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39081 39473
YP_007677430.1 NC_020876_p21 hypothetical protein phrog_123 tail terminator connector 1 14664 15095
YP_007677478.1 NC_020876_p69 hypothetical protein phrog_12205 unknown function unknown function -1 42609 42737
YP_007677464.1 NC_020876_p55 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36543 37304
YP_007677431.1 NC_020876_p22 major tail subunit phrog_117 major tail protein tail 1 15114 15710
YP_007677461.1 NC_020876_p52 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 34107 36164
YP_007677442.1 NC_020876_p33 ParB phrog_2639 Arc-like repressor transcription regulation 1 26715 26993
YP_007677437.1 NC_020876_p28 hypothetical protein phrog_352 minor tail protein tail 1 22076 22519
YP_007677410.1 NC_020876_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 569 1336
YP_007677500.1 NC_020876_p91 hypothetical protein phrog_8476 unknown function unknown function -1 50042 50335
YP_007677483.1 NC_020876_p74 hypothetical protein phrog_1562 unknown function unknown function -1 44359 44772
YP_007677457.1 NC_020876_p48 hypothetical protein phrog_690 unknown function unknown function -1 32308 32517
YP_007677503.1 NC_020876_p94 hypothetical protein phrog_1445 unknown function unknown function -1 51372 51452
YP_007677443.1 NC_020876_p34 hypothetical protein phrog_6992 unknown function unknown function -1 27171 27341
YP_007677502.1 NC_020876_p93 hypothetical protein phrog_1392 unknown function unknown function -1 50631 51341
YP_007677476.1 NC_020876_p67 HTH binding protein phrog_9069 unknown function unknown function -1 41465 41764
YP_007677498.1 NC_020876_p89 hypothetical protein phrog_519 unknown function unknown function -1 49678 49845
YP_007677486.1 NC_020876_p77 hypothetical protein phrog_4294 unknown function unknown function -1 45943 46101
YP_007677439.1 NC_020876_p30 minor tail subunit phrog_737 minor tail protein tail 1 22858 25263
YP_007677450.1 NC_020876_p41 hypothetical protein phrog_3283 unknown function unknown function -1 28870 29103
YP_007677420.1 NC_020876_p11 terminase phrog_9 terminase large subunit head and packaging 1 7443 9233
YP_007677458.1 NC_020876_p49 hypothetical protein phrog_1454 unknown function unknown function -1 32510 32758
YP_007677494.1 NC_020876_p85 hypothetical protein phrog_855 unknown function unknown function -1 48376 48510
YP_007677419.1 NC_020876_p10 lysin B phrog_102 endolysin lysis 1 6443 7420
YP_007677504.1 NC_020876_p95 hypothetical protein phrog_1676 unknown function unknown function -1 51477 51767
YP_007677485.1 NC_020876_p76 hypothetical protein phrog_1173 unknown function unknown function -1 45638 45805
YP_007677497.1 NC_020876_p88 hypothetical protein phrog_586 unknown function unknown function -1 49328 49681
YP_007677481.1 NC_020876_p72 hypothetical protein phrog_642 unknown function unknown function -1 43193 43417
YP_007677477.1 NC_020876_p68 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41792 42598
YP_007677493.1 NC_020876_p84 hypothetical protein phrog_421 unknown function unknown function -1 47618 48376
YP_007677418.1 NC_020876_p9 holin phrog_526 holin lysis 1 5985 6446
YP_007677459.1 NC_020876_p50 ThyX-like protein phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 32760 33488
YP_007677463.1 NC_020876_p54 hypothetical protein phrog_499 unknown function unknown function -1 36364 36546
YP_007677417.1 NC_020876_p8 lysin A phrog_317 endolysin lysis 1 4690 5988
YP_007677453.1 NC_020876_p44 hypothetical protein phrog_2094 unknown function unknown function -1 31151 31504
YP_007677416.1 NC_020876_p7 hypothetical protein phrog_1087 unknown function unknown function 1 4532 4690
YP_007677465.1 NC_020876_p56 hypothetical protein phrog_2436 unknown function unknown function -1 37301 37453
YP_007677489.1 NC_020876_p80 hypothetical protein phrog_1875 unknown function unknown function -1 46671 46943
YP_007677452.1 NC_020876_p43 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29355 31142
YP_007677436.1 NC_020876_p27 minor tail subunit phrog_110 minor tail protein tail 1 20226 21998
YP_007677422.1 NC_020876_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10720 11583
YP_007677473.1 NC_020876_p64 hypothetical protein phrog_2187 unknown function unknown function -1 40141 40254
YP_007677415.1 NC_020876_p6 structural protein phrog_1260 minor tail protein tail 1 3375 4340
YP_007677479.1 NC_020876_p70 hypothetical protein phrog_520 unknown function unknown function -1 42734 42973
YP_007677433.1 NC_020876_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15760 16230
YP_007677495.1 NC_020876_p86 hypothetical protein phrog_3718 unknown function unknown function -1 48521 48829
YP_007677469.1 NC_020876_p60 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38621 39106
YP_007677413.1 NC_020876_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2483 2779
YP_007677462.1 NC_020876_p53 hypothetical protein phrog_2046 unknown function unknown function -1 36164 36367
YP_007677455.1 NC_020876_p46 hypothetical protein phrog_11816 unknown function unknown function -1 31689 31889
YP_007677460.1 NC_020876_p51 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 33565 34110
YP_007677499.1 NC_020876_p90 hypothetical protein phrog_1946 unknown function unknown function -1 49842 50042
YP_007677441.1 NC_020876_p32 ParA phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 26162 26722
YP_007677446.1 NC_020876_p37 hypothetical protein phrog_383 unknown function unknown function -1 27748 28125
YP_007677424.1 NC_020876_p15 major capsid protein phrog_10 major head protein head and packaging 1 12180 13136
YP_007677474.1 NC_020876_p65 esterase/lipase phrog_789 esterase/lipase other -1 40251 41090
YP_007677456.1 NC_020876_p47 HTH DNA binding protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31889 32311
YP_007677428.1 NC_020876_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 13951 14319
YP_007677496.1 NC_020876_p87 hypothetical protein phrog_2355 unknown function unknown function -1 48882 49307
YP_007677471.1 NC_020876_p62 hypothetical protein phrog_1370 unknown function unknown function -1 39542 39676
YP_007677425.1 NC_020876_p16 hypothetical protein phrog_748 head-tail connector protein connector 1 13206 13382
YP_007677444.1 NC_020876_p35 hypothetical protein phrog_13926 unknown function unknown function -1 27338 27556
YP_007677490.1 NC_020876_p81 hypothetical protein phrog_3351 unknown function unknown function -1 46940 47167
YP_007677480.1 NC_020876_p71 hypothetical protein phrog_666 unknown function unknown function -1 43002 43196
YP_007677435.1 NC_020876_p26 minor tail subunit phrog_106 minor tail protein tail 1 19219 20229
YP_007677432.1 NC_020876_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15760 16652
YP_007677488.1 NC_020876_p79 hypothetical protein phrog_1178 unknown function unknown function -1 46357 46674
YP_007677447.1 NC_020876_p38 hypothetical protein phrog_2099 unknown function unknown function -1 28103 28390
YP_007677414.1 NC_020876_p5 terminase small subunit phrog_226 minor tail protein tail 1 2818 3288
YP_007677412.1 NC_020876_p3 hypothetical protein phrog_4491 unknown function unknown function 1 2181 2480
YP_007677472.1 NC_020876_p63 endo VII protein phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39702 40175
YP_007677468.1 NC_020876_p59 hypothetical protein phrog_2264 unknown function unknown function -1 38544 38621
YP_007677445.1 NC_020876_p36 hypothetical protein phrog_542 unknown function unknown function -1 27566 27751
YP_007677484.1 NC_020876_p75 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44828 45400
YP_007677466.1 NC_020876_p57 metallophosphoesterase phrog_221 metallo-phosphoesterase other -1 37457 38227
YP_007677427.1 NC_020876_p18 hypothetical protein phrog_830 head-tail connector protein connector 1 13760 13954
YP_007677448.1 NC_020876_p39 hypothetical protein phrog_12687 unknown function unknown function -1 28387 28587
YP_007677451.1 NC_020876_p42 hypothetical protein phrog_896 unknown function unknown function -1 29100 29321
YP_007677501.1 NC_020876_p92 hypothetical protein phrog_3207 unknown function unknown function -1 50335 50622