Genomic map of Staphylococcus phage vB_SauM_Romulus (NC_020877)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_020877
Definition
Staphylococcus phage vB_SauM_Romulus, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Silviavirus.
DB of origin
REFSEQ
Length
131332
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
164
%GC
30.01
Number of singletons
0
Number of paralogs
9

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007677541.1 NC_020877_p37 structural protein phrog_1394 virion structural protein head and packaging 1 41745 42266
YP_007677519.1 NC_020877_p15 hypothetical protein phrog_1127 unknown function unknown function 1 17889 18509
YP_007677663.1 NC_020877_p159 hypothetical protein phrog_937 hemolysin other -1 129146 129478
YP_007677536.1 NC_020877_p32 structural protein phrog_1011 virion structural protein head and packaging 1 35790 36641
YP_007677525.1 NC_020877_p21 hypothetical protein phrog_1905 unknown function unknown function 1 22718 23167
YP_007677598.1 NC_020877_p94 hypothetical protein phrog_11752 unknown function unknown function 1 93928 94479
YP_007677638.1 NC_020877_p134 hypothetical protein phrog_3048 unknown function unknown function -1 113764 113949
YP_007677621.1 NC_020877_p117 hypothetical protein phrog_3549 unknown function unknown function 1 105807 106031
YP_007677511.1 NC_020877_p7 hypothetical protein phrog_1108 portal protein head and packaging 1 7931 8296
YP_007677611.1 NC_020877_p107 hypothetical protein phrog_1709 unknown function unknown function 1 101426 101707
YP_007677597.1 NC_020877_p93 hypothetical protein phrog_28697 unknown function unknown function 1 93846 93905
YP_007677507.1 NC_020877_p3 hypothetical protein phrog_1917 virion structural protein head and packaging 1 5196 5996
YP_007677553.1 NC_020877_p49 exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 56266 57297
YP_007677577.1 NC_020877_p73 hypothetical protein phrog_2673 unknown function unknown function 1 82828 83082
YP_007677505.1 NC_020877_p1 group I intron protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1213 1875
YP_007677658.1 NC_020877_p154 transposase phrog_506 transposase integration and excision -1 125392 126501
YP_007677517.1 NC_020877_p13 hypothetical protein phrog_772 tail fiber protein tail 1 15656 16405
YP_007677613.1 NC_020877_p109 hypothetical protein phrog_27640 unknown function unknown function -1 103176 103289
YP_007677623.1 NC_020877_p119 hypothetical protein phrog_17429 unknown function unknown function -1 107120 107686
YP_007677569.1 NC_020877_p65 hypothetical protein phrog_1069 unknown function unknown function 1 75857 76339
YP_007677516.1 NC_020877_p12 hypothetical protein phrog_1205 unknown function unknown function 1 15413 15646
YP_007677604.1 NC_020877_p100 hypothetical protein phrog_467 unknown function unknown function 1 96819 97211
YP_007677615.1 NC_020877_p111 hypothetical protein phrog_15099 unknown function unknown function 1 103881 104036
YP_007677652.1 NC_020877_p148 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 122189 122404
YP_007677534.1 NC_020877_p30 tail lysin phrog_2677 tail protein with lysin activity tail 1 32338 33231
YP_007677609.1 NC_020877_p105 intron-encoded nuclease phrog_467 unknown function unknown function 1 100635 101042
YP_007677583.1 NC_020877_p79 hypothetical protein phrog_2356 unknown function unknown function 1 86780 87286
YP_007677531.1 NC_020877_p27 tail tip protein phrog_10341 endolysin lysis 1 28090 28959
YP_007677590.1 NC_020877_p86 hypothetical protein phrog_3157 unknown function unknown function 1 91444 91695
YP_007677523.1 NC_020877_p19 capsid protein phrog_985 virion structural protein head and packaging 1 21416 21754
YP_007677650.1 NC_020877_p146 hypothetical protein phrog_2706 unknown function unknown function -1 121356 121544
YP_007677629.1 NC_020877_p125 hypothetical protein phrog_2948 unknown function unknown function -1 109283 109813
YP_007677588.1 NC_020877_p84 hypothetical protein phrog_2726 unknown function unknown function 1 90234 90869
YP_007677610.1 NC_020877_p106 hypothetical protein phrog_16365 unknown function unknown function 1 101168 101377
YP_007677635.1 NC_020877_p131 hypothetical protein phrog_152 RinB-like transcriptional activator transcription regulation -1 112782 112922
YP_007677592.1 NC_020877_p88 hypothetical protein phrog_3128 unknown function unknown function 1 91969 92253
YP_007677657.1 NC_020877_p153 hypothetical protein phrog_987 unknown function unknown function -1 125011 125286
YP_007677562.1 NC_020877_p58 ribonucleotide-diphosphate reductase alpha subunit phrog_12229 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 63931 65664
YP_007677518.1 NC_020877_p14 hypothetical protein phrog_1004 virion structural protein head and packaging 1 17014 17889
YP_007677655.1 NC_020877_p151 N-acetylmuramoyl-L-alanine amidase phrog_833 endolysin lysis -1 123513 124430
YP_007677563.1 NC_020877_p59 homing endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 65959 66441
YP_007677630.1 NC_020877_p126 hypothetical protein phrog_2981 unknown function unknown function -1 109940 110500
YP_007677633.1 NC_020877_p129 ArpR DNA-binding protein phrog_14652 DNA binding protein DNA, RNA and nucleotide metabolism -1 111147 111932
YP_007677618.1 NC_020877_p114 hypothetical protein phrog_12335 unknown function unknown function 1 104779 105045
YP_007677605.1 NC_020877_p101 pentapeptide repeat-containing protein phrog_923 unknown function unknown function 1 97211 97942
YP_007677636.1 NC_020877_p132 hypothetical protein phrog_2861 unknown function unknown function -1 112919 113242
YP_007677549.1 NC_020877_p45 hypothetical protein phrog_11461 unknown function unknown function 1 54725 54982
YP_007677559.1 NC_020877_p55 hypothetical protein phrog_1095 unknown function unknown function 1 61528 61965
YP_007677648.1 NC_020877_p144 hypothetical protein phrog_29421 unknown function unknown function -1 120864 120926
YP_007677627.1 NC_020877_p123 hypothetical protein phrog_2532 unknown function unknown function -1 108673 108867
YP_007677607.1 NC_020877_p103 hypothetical protein phrog_19178 unknown function unknown function 1 98416 98853
YP_007677528.1 NC_020877_p24 hypothetical protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 24141 24599
YP_007677620.1 NC_020877_p116 hypothetical protein phrog_8830 unknown function unknown function 1 105452 105793
YP_007677529.1 NC_020877_p25 tail lysin phrog_1047 tail associated lysin tail 1 24653 27634
YP_007677665.1 NC_020877_p161 hypothetical protein phrog_4526 unknown function unknown function -1 129854 130117
YP_007677515.1 NC_020877_p11 major capsid protein phrog_752 major head protein head and packaging 1 13918 15309
YP_007677634.1 NC_020877_p130 nuclease phrog_452 endonuclease DNA, RNA and nucleotide metabolism -1 112319 112681
YP_007677535.1 NC_020877_p31 glycerophosphoryl diester phosphodiesterase phrog_2204 glycerophosphoryl diester phosphodiesterase other 1 33222 35678
YP_007677578.1 NC_020877_p74 hypothetical protein phrog_2721 unknown function unknown function 1 83079 83852
YP_007677641.1 NC_020877_p137 hypothetical protein phrog_2811 virion structural protein head and packaging -1 116228 116491
YP_007677566.1 NC_020877_p62 thioredoxin-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 68783 69103
YP_007677524.1 NC_020877_p20 hypothetical protein phrog_2701 unknown function unknown function 1 22544 22681
YP_007677551.1 NC_020877_p47 hypothetical protein phrog_9725 unknown function unknown function 1 55259 55507
YP_007677617.1 NC_020877_p113 hypothetical protein phrog_14210 unknown function unknown function 1 104353 104643
YP_007677547.1 NC_020877_p43 Rep protein phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 51707 53293
YP_007677556.1 NC_020877_p52 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 59476 60069
YP_007677575.1 NC_020877_p71 major tail protein phrog_341 major tail protein tail 1 81990 82502
YP_007677558.1 NC_020877_p54 hypothetical protein phrog_1291 unknown function unknown function 1 61220 61528
YP_007677560.1 NC_020877_p56 resolvase phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 61955 62563
YP_007677647.1 NC_020877_p143 hypothetical protein phrog_8238 RNA ligase DNA, RNA and nucleotide metabolism -1 119387 120829
YP_007677512.1 NC_020877_p8 transposase, IS605 OrfB family protein phrog_506 transposase integration and excision 1 9677 10930
YP_007677602.1 NC_020877_p98 hypothetical protein phrog_17473 unknown function unknown function 1 95648 96544
YP_007677506.1 NC_020877_p2 group I intron protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4022 4942
YP_007677572.1 NC_020877_p68 hypothetical protein phrog_1089 unknown function unknown function 1 80233 80586
YP_007677564.1 NC_020877_p60 HNH endonuclease family protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 67108 67824
YP_007677622.1 NC_020877_p118 hypothetical protein phrog_8830 unknown function unknown function 1 106136 106480
YP_007677546.1 NC_020877_p42 hypothetical protein phrog_2691 tail fiber protein tail 1 48249 49613
YP_007677625.1 NC_020877_p121 YpoX protein II phrog_98 unknown function unknown function -1 107937 108290
YP_007677532.1 NC_020877_p28 hypothetical protein phrog_8949 unknown function unknown function 1 29018 29848
YP_007677574.1 NC_020877_p70 structural protein phrog_1240 Ig domain containing protein other 1 81336 81968
YP_007677586.1 NC_020877_p82 structural protein phrog_1104 virion structural protein head and packaging 1 89263 89721
YP_007677596.1 NC_020877_p92 hypothetical protein phrog_13381 unknown function unknown function 1 93320 93817
YP_007677595.1 NC_020877_p91 hypothetical protein phrog_13794 unknown function unknown function 1 92940 93185
YP_007677662.1 NC_020877_p158 hypothetical protein phrog_1215 unknown function unknown function -1 128920 129135
YP_007677521.1 NC_020877_p17 hypothetical protein phrog_1151 unknown function unknown function 1 19364 19570
YP_007677510.1 NC_020877_p6 hypothetical protein phrog_3937 unknown function unknown function 1 7566 7925
YP_007677653.1 NC_020877_p149 hypothetical protein phrog_2770 unknown function unknown function -1 122418 122639
YP_007677601.1 NC_020877_p97 hypothetical protein phrog_13842 unknown function unknown function 1 95397 95654
YP_007677606.1 NC_020877_p102 hypothetical protein phrog_13526 unknown function unknown function 1 98083 98394
YP_007677631.1 NC_020877_p127 hypothetical protein phrog_4178 major tail protein tail -1 110517 110840
YP_007677667.1 NC_020877_p163 hypothetical protein phrog_1321 unknown function unknown function 1 130625 130906
YP_007677589.1 NC_020877_p85 hypothetical protein phrog_2863 unknown function unknown function 1 90905 91303
YP_007677637.1 NC_020877_p133 hypothetical protein phrog_2708 nucleotide kinase other -1 113229 113645
YP_007677591.1 NC_020877_p87 hypothetical protein phrog_13266 unknown function unknown function 1 91705 91968
YP_007677522.1 NC_020877_p18 hypothetical protein phrog_279 tail sheath tail 1 19593 21353
YP_007677587.1 NC_020877_p83 hypothetical protein phrog_1303 DNA binding protein DNA, RNA and nucleotide metabolism 1 89786 90223
YP_007677576.1 NC_020877_p72 structural protein phrog_1696 major tail protein tail 1 82519 82731
YP_007677660.1 NC_020877_p156 hypothetical protein phrog_29176 unknown function unknown function -1 127779 128327
YP_007677632.1 NC_020877_p128 hypothetical protein phrog_12286 unknown function unknown function -1 110930 111154
YP_007677584.1 NC_020877_p80 hypothetical protein phrog_1113 unknown function unknown function 1 87286 88140
YP_007677542.1 NC_020877_p38 tail protein phrog_877 unknown function unknown function 1 42286 45744
YP_007677526.1 NC_020877_p22 hypothetical protein phrog_2754 virion structural protein head and packaging 1 23224 23532
YP_007677530.1 NC_020877_p26 hypothetical protein phrog_37508 unknown function unknown function 1 27798 27941
YP_007677619.1 NC_020877_p115 hypothetical protein phrog_3325 TreN-like membrane protein other 1 105061 105207
YP_007677554.1 NC_020877_p50 hypothetical protein phrog_2773 unknown function unknown function 1 57299 57565
YP_007677639.1 NC_020877_p135 hypothetical protein phrog_2966 unknown function unknown function -1 113949 114110
YP_007677599.1 NC_020877_p95 hypothetical protein phrog_3453 unknown function unknown function 1 94485 94691
YP_007677579.1 NC_020877_p75 DNA repair exonuclease phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 83845 85098
YP_007677645.1 NC_020877_p141 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 118029 118619
YP_007677570.1 NC_020877_p66 hypothetical protein phrog_2672 unknown function unknown function 1 76410 77570
YP_007677594.1 NC_020877_p90 hypothetical protein phrog_3143 unknown function unknown function 1 92623 92937
YP_007677649.1 NC_020877_p145 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 120938 121363
YP_007677626.1 NC_020877_p122 YpoX protein I phrog_98 unknown function unknown function -1 108287 108676
YP_007677571.1 NC_020877_p67 intron-encoded endonuclease phrog_4645 endonuclease DNA, RNA and nucleotide metabolism 1 78186 79166
YP_007677543.1 NC_020877_p39 hypothetical protein phrog_1074 unknown function unknown function 1 45796 45966
YP_007677552.1 NC_020877_p48 adenine-specific methyltransferase phrog_67 DNA methyltransferase other 1 55507 56196
YP_007677573.1 NC_020877_p69 sigma factor phrog_1025 RNA polymerase sigma factor transcription regulation 1 80573 81232
YP_007677527.1 NC_020877_p23 hypothetical protein phrog_1038 tail assembly chaperone tail 1 23633 24049
YP_007677651.1 NC_020877_p147 hypothetical protein phrog_2896 unknown function unknown function -1 121558 122196
YP_007677544.1 NC_020877_p40 structural protein phrog_2665 virion structural protein head and packaging 1 45956 47869
YP_007677608.1 NC_020877_p104 hypothetical protein phrog_9084 homing endonuclease DNA, RNA and nucleotide metabolism 1 98904 99449
YP_007677540.1 NC_020877_p36 structural protein phrog_2386 virion structural protein head and packaging 1 38939 41641
YP_007677603.1 NC_020877_p99 hypothetical protein phrog_36388 unknown function unknown function 1 96561 96797
YP_007677644.1 NC_020877_p140 HNH endonuclease domain protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 117269 117994
YP_007677600.1 NC_020877_p96 pentapeptide repeat-containing protein phrog_923 unknown function unknown function 1 94691 95410
YP_007677580.1 NC_020877_p76 hypothetical protein phrog_2892 unknown function unknown function 1 85110 85439
YP_007677565.1 NC_020877_p61 hypothetical protein phrog_2797 unknown function unknown function 1 68473 68799
YP_007677581.1 NC_020877_p77 hypothetical protein phrog_1080 unknown function unknown function 1 85512 86045
YP_007677643.1 NC_020877_p139 hypothetical protein phrog_2642 unknown function unknown function -1 116653 117276
YP_007677513.1 NC_020877_p9 prohead protease phrog_1028 head maturation protease head and packaging 1 12096 12869
YP_007677624.1 NC_020877_p120 hypothetical protein phrog_2884 unknown function unknown function -1 107701 107940
YP_007677628.1 NC_020877_p124 hypothetical protein phrog_467 unknown function unknown function -1 108864 109271
YP_007677509.1 NC_020877_p5 hypothetical protein phrog_3094 unknown function unknown function 1 6671 7504
YP_007677520.1 NC_020877_p16 hypothetical protein phrog_1000 unknown function unknown function 1 18528 19364
YP_007677666.1 NC_020877_p162 hypothetical protein phrog_3395 membrane protein moron, auxiliary metabolic gene and host takeover 1 130261 130647
YP_007677640.1 NC_020877_p136 hypothetical protein phrog_3200 unknown function unknown function -1 114110 116149
YP_007677514.1 NC_020877_p10 hypothetical protein phrog_1133 unknown function unknown function 1 12883 13833
YP_007677533.1 NC_020877_p29 tail lysin phrog_1015 tail protein with lysin activity tail 1 29900 32332
YP_007677659.1 NC_020877_p155 hypothetical protein phrog_1257 ribosome associated inhibitor A; zinc finger domain moron, auxiliary metabolic gene and host takeover -1 127466 127681
YP_007677661.1 NC_020877_p157 phage anti-repressor protein phrog_2977 anti-repressor transcription regulation -1 128388 128642
YP_007677614.1 NC_020877_p110 hypothetical protein phrog_2601 unknown function unknown function 1 103494 103808
YP_007677539.1 NC_020877_p35 tail protein phrog_6 baseplate wedge subunit tail 1 37881 38927
YP_007677568.1 NC_020877_p64 integration host factor phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 69921 70223
YP_007677537.1 NC_020877_p33 structural protein phrog_1073 unknown function unknown function 1 36641 37162
YP_007677593.1 NC_020877_p89 hypothetical protein phrog_2988 unknown function unknown function 1 92266 92559
YP_007677656.1 NC_020877_p152 holin phrog_962 holin lysis -1 124430 124930
YP_007677561.1 NC_020877_p57 ribonucleotide-diphosphate reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 62578 63915
YP_007677555.1 NC_020877_p51 exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 57558 59492
YP_007677646.1 NC_020877_p142 HNH endonuclease protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 118651 119370
YP_007677616.1 NC_020877_p112 hypothetical protein phrog_10311 unknown function unknown function 1 104038 104271
YP_007677668.1 NC_020877_p164 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 130903 131316
YP_007677550.1 NC_020877_p46 DNA methylase phrog_8769 methyltransferase other 1 55132 55290
YP_007677508.1 NC_020877_p4 hypothetical protein phrog_1116 unknown function unknown function 1 6149 6628
YP_007677545.1 NC_020877_p41 hypothetical protein phrog_2671 tail fiber protein tail 1 47887 48243
YP_007677557.1 NC_020877_p53 primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 60083 61159
YP_007677612.1 NC_020877_p108 hypothetical protein phrog_12518 unknown function unknown function 1 102517 102924
YP_007677664.1 NC_020877_p160 hypothetical protein phrog_1481 unknown function unknown function -1 129485 129817
YP_007677538.1 NC_020877_p34 baseplate protein phrog_975 baseplate protein tail 1 37162 37866
YP_007677642.1 NC_020877_p138 LysM domain-containing protein phrog_1274 lysM motif protein lysis -1 116505 116678
YP_007677654.1 NC_020877_p150 amidase phrog_12367 endolysin lysis -1 122741 123499
YP_007677567.1 NC_020877_p63 hypothetical protein phrog_1054 unknown function unknown function 1 69310 69912
YP_007677582.1 NC_020877_p78 hypothetical protein phrog_984 unknown function unknown function 1 86038 86799
YP_007677548.1 NC_020877_p44 helicase/primase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 53286 54725
YP_007677585.1 NC_020877_p81 hypothetical protein phrog_1007 unknown function unknown function 1 88514 89245