Genomic map of Pseudomonas phage Phi-S1 (NC_021062)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021062
Definition
Pseudomonas phage Phi-S1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Pifdecavirus; Pseudomonas virus PhiS1.
DB of origin
REFSEQ
Length
40192
Host Name
Pseudomonas fluorescens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
47
%GC
56.21
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007869898.1 NC_021062_p21 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 12108 12644
YP_007869895.1 NC_021062_p18 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 10436 11128
YP_007869905.1 NC_021062_p28 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 17752 18663
YP_007869889.1 NC_021062_p12 hypothetical protein phrog_25890 unknown function unknown function 1 7154 7426
YP_007869920.1 NC_021062_p43 type II holin phrog_920 holin lysis 1 36975 37166
YP_007869903.1 NC_021062_p26 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 17184 17543
YP_007869906.1 NC_021062_p29 hypothetical protein phrog_1447 unknown function unknown function 1 18772 19038
YP_007869915.1 NC_021062_p38 hypothetical protein phrog_308 internal virion protein head and packaging 1 27892 28329
YP_007869901.1 NC_021062_p24 hypothetical protein phrog_9312 unknown function unknown function 1 14619 15059
YP_007869914.1 NC_021062_p37 tail tubular protein B phrog_457 tail protein tail 1 25438 27861
YP_007869909.1 NC_021062_p32 head-tail connector protein phrog_449 head-tail adaptor connector 1 19658 21265
YP_007869881.1 NC_021062_p4 hypothetical protein phrog_13431 virion structural protein head and packaging 1 1679 1954
YP_007869897.1 NC_021062_p20 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 11580 12041
YP_007869878.1 NC_021062_p1 hypothetical protein phrog_7806 unknown function unknown function 1 869 1351
YP_007869907.1 NC_021062_p30 hypothetical protein phrog_1391 unknown function unknown function 1 19025 19315
YP_007869911.1 NC_021062_p34 major capsid protein phrog_267 major head protein head and packaging 1 22331 23356
YP_007869879.1 NC_021062_p2 hypothetical protein phrog_7884 unknown function unknown function 1 1351 1554
YP_007869910.1 NC_021062_p33 capsid assembly protein phrog_1052 head assembly head and packaging 1 21330 22241
YP_007869924.1 NC_021062_p47 hypothetical protein phrog_2193 unknown function unknown function 1 39837 40010
YP_007869922.1 NC_021062_p45 Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 37425 37862
YP_007869883.1 NC_021062_p6 hypothetical protein phrog_8679 unknown function unknown function 1 2366 2902
YP_007869916.1 NC_021062_p39 DNA translocation protein phrog_805 internal virion protein head and packaging 1 28341 28898
YP_007869896.1 NC_021062_p19 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 11131 11568
YP_007869886.1 NC_021062_p9 hypothetical protein phrog_6379 unknown function unknown function 1 3861 4133
YP_007869921.1 NC_021062_p44 DNA packaging/maturation protein A phrog_1351 terminase small subunit head and packaging 1 37171 37425
YP_007869913.1 NC_021062_p36 tail tubular protein A phrog_446 tail protein tail 1 24839 25426
YP_007869902.1 NC_021062_p25 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 15046 17184
YP_007869884.1 NC_021062_p7 hypothetical protein phrog_61 2OG-Fe(II) oxygenase moron, auxiliary metabolic gene and host takeover 1 2899 3603
YP_007869923.1 NC_021062_p46 DNA packaging/maturation protein B phrog_38 terminase large subunit head and packaging 1 37859 39616
YP_007869892.1 NC_021062_p15 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 9180 9860
YP_007869891.1 NC_021062_p14 hypothetical protein phrog_13790 DNA ligase DNA, RNA and nucleotide metabolism 1 8488 8934
YP_007869917.1 NC_021062_p40 DNA translocation protein phrog_1339 internal virion protein head and packaging 1 28907 31102
YP_007869894.1 NC_021062_p17 hypothetical protein phrog_5138 unknown function unknown function 1 9991 10362
YP_007869887.1 NC_021062_p10 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 4248 6902
YP_007869904.1 NC_021062_p27 hypothetical protein phrog_1334 unknown function unknown function 1 17546 17755
YP_007869918.1 NC_021062_p41 DNA translocation protein phrog_342 internal virion protein with endolysin domain head and packaging 1 31124 35119
YP_007869880.1 NC_021062_p3 hypothetical protein singleton unknown function unknown function 1 1544 1666
YP_007869890.1 NC_021062_p13 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7426 8409
YP_007869908.1 NC_021062_p31 hypothetical protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 19325 19645
YP_007869882.1 NC_021062_p5 hypothetical protein phrog_18517 unknown function unknown function 1 1938 2237
YP_007869893.1 NC_021062_p16 hypothetical protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9857 9994
YP_007869899.1 NC_021062_p22 primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 12648 14339
YP_007869912.1 NC_021062_p35 minor capsid protein singleton unknown function unknown function 1 23399 24772
YP_007869900.1 NC_021062_p23 hypothetical protein phrog_9727 unknown function unknown function 1 14342 14560
YP_007869888.1 NC_021062_p11 hypothetical protein phrog_13307 unknown function unknown function 1 6966 7157
YP_007869919.1 NC_021062_p42 tail fiber protein phrog_4242 tail fiber protein tail 1 35177 36964
YP_007869885.1 NC_021062_p8 hypothetical protein phrog_7066 unknown function unknown function 1 3607 3861