Genomic map of Mycobacterium phage PattyP (NC_021297)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021297
Definition
Mycobacterium phage PattyP, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52057
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
92
%GC
63.58
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008050832.1 NC_021297_p67 hypothetical protein singleton unknown function unknown function -1 43305 43598
YP_008050813.1 NC_021297_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34753 35244
YP_008050792.1 NC_021297_p27 minor tail protein phrog_106 minor tail protein tail 1 19124 21181
YP_008050793.1 NC_021297_p28 hypothetical protein phrog_1543 minor tail protein tail 1 21200 21382
YP_008050786.1 NC_021297_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13992 14387
YP_008050767.1 NC_021297_p2 HNH endonuclease domain protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 748 1044
YP_008050814.1 NC_021297_p49 hypothetical protein phrog_499 unknown function unknown function -1 35241 35423
YP_008050820.1 NC_021297_p55 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39052 39696
YP_008050852.1 NC_021297_p87 hypothetical protein phrog_5419 unknown function unknown function -1 49974 50303
YP_008050799.1 NC_021297_p34 carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 26227 27705
YP_008050836.1 NC_021297_p71 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44418 45236
YP_008050841.1 NC_021297_p76 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 46928 47227
YP_008050819.1 NC_021297_p54 hypothetical protein phrog_8843 unknown function unknown function -1 38834 39055
YP_008050850.1 NC_021297_p85 DNA methylase phrog_363 DNA methyltransferase other -1 49100 49801
YP_008050797.1 NC_021297_p32 minor tail protein phrog_1397 unknown function unknown function 1 24009 24356
YP_008050827.1 NC_021297_p62 endo VII protein phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41481 41975
YP_008050800.1 NC_021297_p35 hypothetical protein phrog_644 unknown function unknown function 1 27795 28118
YP_008050768.1 NC_021297_p3 hypothetical protein phrog_14140 unknown function unknown function 1 1052 1243
YP_008050778.1 NC_021297_p13 terminase phrog_9 terminase large subunit head and packaging 1 7272 8960
YP_008050794.1 NC_021297_p29 minor tail protein phrog_110 minor tail protein tail 1 21382 23184
YP_008050803.1 NC_021297_p38 hypothetical protein phrog_411 unknown function unknown function 1 29240 29536
YP_008050834.1 NC_021297_p69 hypothetical protein phrog_2184 unknown function unknown function -1 43885 44205
YP_008050830.1 NC_021297_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42320 43141
YP_008050805.1 NC_021297_p40 hypothetical protein phrog_1966 unknown function unknown function -1 31313 31585
YP_008050855.1 NC_021297_p90 carboxylase phrog_15443 unknown function unknown function -1 50856 51068
YP_008050809.1 NC_021297_p44 hypothetical protein phrog_383 unknown function unknown function -1 32116 32472
YP_008050789.1 NC_021297_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15719 16617
YP_008050843.1 NC_021297_p78 hypothetical protein phrog_1720 unknown function unknown function -1 47396 47668
YP_008050833.1 NC_021297_p68 hypothetical protein phrog_520 unknown function unknown function -1 43595 43888
YP_008050781.1 NC_021297_p16 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11336 11848
YP_008050822.1 NC_021297_p57 hypothetical protein phrog_1783 unknown function unknown function -1 39913 40092
YP_008050816.1 NC_021297_p51 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36204 36344
YP_008050774.1 NC_021297_p9 hypothetical protein phrog_747 unknown function unknown function 1 4104 4361
YP_008050854.1 NC_021297_p89 hypothetical protein phrog_5130 unknown function unknown function -1 50533 50721
YP_008050798.1 NC_021297_p33 minor tail protein phrog_346 minor tail protein tail 1 24381 26234
YP_008050844.1 NC_021297_p79 hypothetical protein phrog_1387 unknown function unknown function -1 47665 47859
YP_008050790.1 NC_021297_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15719 16195
YP_008050782.1 NC_021297_p17 major capsid protein phrog_10 major head protein head and packaging 1 11858 12859
YP_008050829.1 NC_021297_p64 NrdH-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42045 42323
YP_008050784.1 NC_021297_p19 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13181 13630
YP_008050828.1 NC_021297_p63 hypothetical protein phrog_1019 unknown function unknown function -1 41962 42048
YP_008050770.1 NC_021297_p5 hypothetical protein phrog_7087 unknown function unknown function 1 1734 2024
YP_008050777.1 NC_021297_p12 HNH endonuclease phrog_8660 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6770 7288
YP_008050849.1 NC_021297_p84 cellulase phrog_4631 unknown function unknown function -1 48503 48820
YP_008050807.1 NC_021297_p42 hypothetical protein phrog_1860 unknown function unknown function -1 31749 31895
YP_008050801.1 NC_021297_p36 hypothetical protein phrog_1560 unknown function unknown function 1 28128 28319
YP_008050776.1 NC_021297_p11 lysin B phrog_102 endolysin lysis 1 5782 6750
YP_008050788.1 NC_021297_p23 major tail subunit phrog_117 major tail protein tail 1 14846 15697
YP_008050785.1 NC_021297_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 13630 13992
YP_008050780.1 NC_021297_p15 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10396 11277
YP_008050831.1 NC_021297_p66 hypothetical protein phrog_2864 unknown function unknown function -1 43135 43305
YP_008050779.1 NC_021297_p14 portal protein phrog_104 portal protein head and packaging 1 8957 10399
YP_008050766.1 NC_021297_p1 hypothetical protein phrog_4649 unknown function unknown function 1 599 751
YP_008050775.1 NC_021297_p10 lysin A phrog_317 endolysin lysis 1 4371 5792
YP_008050835.1 NC_021297_p70 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44209 44391
YP_008050848.1 NC_021297_p83 hypothetical protein phrog_932 unknown function unknown function -1 48357 48506
YP_008050825.1 NC_021297_p60 hypothetical protein phrog_397 unknown function unknown function -1 40344 40478
YP_008050815.1 NC_021297_p50 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35420 36211
YP_008050810.1 NC_021297_p45 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32500 34329
YP_008050842.1 NC_021297_p77 hypothetical protein phrog_6474 recombination directionality factor integration and excision -1 47220 47399
YP_008050839.1 NC_021297_p74 hypothetical protein phrog_1809 unknown function unknown function -1 45717 46112
YP_008050837.1 NC_021297_p72 hypothetical protein phrog_2730 unknown function unknown function -1 45233 45406
YP_008050804.1 NC_021297_p39 integrase, s-int phrog_95 integrase integration and excision 1 29688 31190
YP_008050845.1 NC_021297_p80 hypothetical protein phrog_1155 unknown function unknown function -1 47856 48044
YP_008050838.1 NC_021297_p73 hypothetical protein phrog_1584 unknown function unknown function -1 45403 45720
YP_008050846.1 NC_021297_p81 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48044 48211
YP_008050796.1 NC_021297_p31 minor tail protein phrog_981 minor tail protein tail 1 23665 24012
YP_008050856.1 NC_021297_p91 hypothetical protein phrog_10520 unknown function unknown function -1 51065 51310
YP_008050823.1 NC_021297_p58 hypothetical protein phrog_11567 unknown function unknown function -1 40074 40250
YP_008050811.1 NC_021297_p46 hypothetical protein phrog_542 unknown function unknown function -1 34370 34495
YP_008050783.1 NC_021297_p18 hypothetical protein phrog_1857 head-tail connector protein connector 1 12945 13181
YP_008050821.1 NC_021297_p56 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39524 39934
YP_008050857.1 NC_021297_p92 hypothetical protein phrog_828 unknown function unknown function -1 51476 51679
YP_008050824.1 NC_021297_p59 hypothetical protein phrog_5801 unknown function unknown function -1 40273 40356
YP_008050773.1 NC_021297_p8 hypothetical protein phrog_1718 tail protein tail 1 3836 4096
YP_008050772.1 NC_021297_p7 hypothetical protein phrog_553 minor tail protein tail 1 3121 3822
YP_008050795.1 NC_021297_p30 minor tail protein phrog_352 minor tail protein tail 1 23222 23668
YP_008050806.1 NC_021297_p41 hypothetical protein phrog_2035 unknown function unknown function -1 31582 31752
YP_008050771.1 NC_021297_p6 hypothetical protein phrog_1197 tail protein tail 1 2041 3111
YP_008050808.1 NC_021297_p43 hypothetical protein phrog_1971 unknown function unknown function -1 31841 32119
YP_008050826.1 NC_021297_p61 DNA methylase phrog_67 DNA methyltransferase other -1 40504 41484
YP_008050851.1 NC_021297_p86 hypothetical protein phrog_2212 unknown function unknown function -1 49804 49896
YP_008050769.1 NC_021297_p4 hypothetical protein phrog_226 minor tail protein tail 1 1279 1713
YP_008050812.1 NC_021297_p47 hypothetical protein phrog_1781 unknown function unknown function -1 34492 34722
YP_008050787.1 NC_021297_p22 hypothetical protein phrog_123 tail terminator connector 1 14391 14837
YP_008050818.1 NC_021297_p53 hypothetical protein phrog_1167 phosphofructokinase other -1 38064 38837
YP_008050847.1 NC_021297_p82 hypothetical protein phrog_2093 unknown function unknown function -1 48208 48360
YP_008050840.1 NC_021297_p75 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46154 46666
YP_008050817.1 NC_021297_p52 phosphoesterase phrog_221 metallo-phosphoesterase other -1 36349 38067
YP_008050802.1 NC_021297_p37 hypothetical protein phrog_754 minor tail protein tail 1 28316 29119
YP_008050853.1 NC_021297_p88 hypothetical protein singleton unknown function unknown function -1 50300 50536
YP_008050791.1 NC_021297_p26 tapemeasure phrog_305 tail length tape measure protein tail 1 16629 19100