| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021297 |
Definition |
Mycobacterium phage PattyP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52057 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
92 |
%GC |
63.58 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008050832.1 | NC_021297_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43305 | 43598 |
| YP_008050813.1 | NC_021297_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34753 | 35244 |
| YP_008050792.1 | NC_021297_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19124 | 21181 |
| YP_008050793.1 | NC_021297_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21200 | 21382 |
| YP_008050786.1 | NC_021297_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13992 | 14387 |
| YP_008050767.1 | NC_021297_p2 | HNH endonuclease domain protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 748 | 1044 |
| YP_008050814.1 | NC_021297_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35241 | 35423 |
| YP_008050820.1 | NC_021297_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39052 | 39696 |
| YP_008050852.1 | NC_021297_p87 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 49974 | 50303 |
| YP_008050799.1 | NC_021297_p34 | carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26227 | 27705 |
| YP_008050836.1 | NC_021297_p71 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44418 | 45236 |
| YP_008050841.1 | NC_021297_p76 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46928 | 47227 |
| YP_008050819.1 | NC_021297_p54 | hypothetical protein | phrog_8843 | unknown function | unknown function | -1 | 38834 | 39055 |
| YP_008050850.1 | NC_021297_p85 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49100 | 49801 |
| YP_008050797.1 | NC_021297_p32 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 24009 | 24356 |
| YP_008050827.1 | NC_021297_p62 | endo VII protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41481 | 41975 |
| YP_008050800.1 | NC_021297_p35 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27795 | 28118 |
| YP_008050768.1 | NC_021297_p3 | hypothetical protein | phrog_14140 | unknown function | unknown function | 1 | 1052 | 1243 |
| YP_008050778.1 | NC_021297_p13 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7272 | 8960 |
| YP_008050794.1 | NC_021297_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21382 | 23184 |
| YP_008050803.1 | NC_021297_p38 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29240 | 29536 |
| YP_008050834.1 | NC_021297_p69 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 43885 | 44205 |
| YP_008050830.1 | NC_021297_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42320 | 43141 |
| YP_008050805.1 | NC_021297_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31313 | 31585 |
| YP_008050855.1 | NC_021297_p90 | carboxylase | phrog_15443 | unknown function | unknown function | -1 | 50856 | 51068 |
| YP_008050809.1 | NC_021297_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32116 | 32472 |
| YP_008050789.1 | NC_021297_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15719 | 16617 |
| YP_008050843.1 | NC_021297_p78 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47396 | 47668 |
| YP_008050833.1 | NC_021297_p68 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43595 | 43888 |
| YP_008050781.1 | NC_021297_p16 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11336 | 11848 |
| YP_008050822.1 | NC_021297_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39913 | 40092 |
| YP_008050816.1 | NC_021297_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36204 | 36344 |
| YP_008050774.1 | NC_021297_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4104 | 4361 |
| YP_008050854.1 | NC_021297_p89 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 50533 | 50721 |
| YP_008050798.1 | NC_021297_p33 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24381 | 26234 |
| YP_008050844.1 | NC_021297_p79 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47665 | 47859 |
| YP_008050790.1 | NC_021297_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15719 | 16195 |
| YP_008050782.1 | NC_021297_p17 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11858 | 12859 |
| YP_008050829.1 | NC_021297_p64 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42045 | 42323 |
| YP_008050784.1 | NC_021297_p19 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13181 | 13630 |
| YP_008050828.1 | NC_021297_p63 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41962 | 42048 |
| YP_008050770.1 | NC_021297_p5 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1734 | 2024 |
| YP_008050777.1 | NC_021297_p12 | HNH endonuclease | phrog_8660 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6770 | 7288 |
| YP_008050849.1 | NC_021297_p84 | cellulase | phrog_4631 | unknown function | unknown function | -1 | 48503 | 48820 |
| YP_008050807.1 | NC_021297_p42 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31749 | 31895 |
| YP_008050801.1 | NC_021297_p36 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28128 | 28319 |
| YP_008050776.1 | NC_021297_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 5782 | 6750 |
| YP_008050788.1 | NC_021297_p23 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14846 | 15697 |
| YP_008050785.1 | NC_021297_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13630 | 13992 |
| YP_008050780.1 | NC_021297_p15 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10396 | 11277 |
| YP_008050831.1 | NC_021297_p66 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 43135 | 43305 |
| YP_008050779.1 | NC_021297_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8957 | 10399 |
| YP_008050766.1 | NC_021297_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 599 | 751 |
| YP_008050775.1 | NC_021297_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 4371 | 5792 |
| YP_008050835.1 | NC_021297_p70 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44209 | 44391 |
| YP_008050848.1 | NC_021297_p83 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48357 | 48506 |
| YP_008050825.1 | NC_021297_p60 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40344 | 40478 |
| YP_008050815.1 | NC_021297_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35420 | 36211 |
| YP_008050810.1 | NC_021297_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32500 | 34329 |
| YP_008050842.1 | NC_021297_p77 | hypothetical protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 47220 | 47399 |
| YP_008050839.1 | NC_021297_p74 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45717 | 46112 |
| YP_008050837.1 | NC_021297_p72 | hypothetical protein | phrog_2730 | unknown function | unknown function | -1 | 45233 | 45406 |
| YP_008050804.1 | NC_021297_p39 | integrase, s-int | phrog_95 | integrase | integration and excision | 1 | 29688 | 31190 |
| YP_008050845.1 | NC_021297_p80 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47856 | 48044 |
| YP_008050838.1 | NC_021297_p73 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45403 | 45720 |
| YP_008050846.1 | NC_021297_p81 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48044 | 48211 |
| YP_008050796.1 | NC_021297_p31 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 23665 | 24012 |
| YP_008050856.1 | NC_021297_p91 | hypothetical protein | phrog_10520 | unknown function | unknown function | -1 | 51065 | 51310 |
| YP_008050823.1 | NC_021297_p58 | hypothetical protein | phrog_11567 | unknown function | unknown function | -1 | 40074 | 40250 |
| YP_008050811.1 | NC_021297_p46 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 34370 | 34495 |
| YP_008050783.1 | NC_021297_p18 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12945 | 13181 |
| YP_008050821.1 | NC_021297_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39524 | 39934 |
| YP_008050857.1 | NC_021297_p92 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 51476 | 51679 |
| YP_008050824.1 | NC_021297_p59 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 40273 | 40356 |
| YP_008050773.1 | NC_021297_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3836 | 4096 |
| YP_008050772.1 | NC_021297_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3121 | 3822 |
| YP_008050795.1 | NC_021297_p30 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23222 | 23668 |
| YP_008050806.1 | NC_021297_p41 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31582 | 31752 |
| YP_008050771.1 | NC_021297_p6 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2041 | 3111 |
| YP_008050808.1 | NC_021297_p43 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31841 | 32119 |
| YP_008050826.1 | NC_021297_p61 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 40504 | 41484 |
| YP_008050851.1 | NC_021297_p86 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 49804 | 49896 |
| YP_008050769.1 | NC_021297_p4 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1279 | 1713 |
| YP_008050812.1 | NC_021297_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34492 | 34722 |
| YP_008050787.1 | NC_021297_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14391 | 14837 |
| YP_008050818.1 | NC_021297_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38064 | 38837 |
| YP_008050847.1 | NC_021297_p82 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48208 | 48360 |
| YP_008050840.1 | NC_021297_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46154 | 46666 |
| YP_008050817.1 | NC_021297_p52 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36349 | 38067 |
| YP_008050802.1 | NC_021297_p37 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28316 | 29119 |
| YP_008050853.1 | NC_021297_p88 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50300 | 50536 |
| YP_008050791.1 | NC_021297_p26 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16629 | 19100 |