| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021298 |
Definition |
Streptomyces phage Lika, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Likavirus. |
DB of origin |
REFSEQ |
Length |
51252 |
Host Name |
Streptomyces lividans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
65.79 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008050929.1 | NC_021298_p72 | hypothetical protein | phrog_4313 | unknown function | unknown function | -1 | 48213 | 49190 |
| YP_008050903.1 | NC_021298_p46 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 31990 | 32367 |
| YP_008050920.1 | NC_021298_p63 | hypothetical protein | phrog_9778 | unknown function | unknown function | -1 | 44860 | 45036 |
| YP_008050867.1 | NC_021298_p10 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 7219 | 8307 |
| YP_008050889.1 | NC_021298_p32 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 25413 | 25931 |
| YP_008050900.1 | NC_021298_p43 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30025 | 31215 |
| YP_008050872.1 | NC_021298_p15 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 10082 | 10837 |
| YP_008050897.1 | NC_021298_p40 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 29297 | 29647 |
| YP_008050918.1 | NC_021298_p61 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 44232 | 44474 |
| YP_008050917.1 | NC_021298_p60 | hypothetical protein | phrog_5209 | unknown function | unknown function | -1 | 43930 | 44235 |
| YP_008050923.1 | NC_021298_p66 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 45772 | 46143 |
| YP_008050864.1 | NC_021298_p7 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 4060 | 5496 |
| YP_008050895.1 | NC_021298_p38 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28382 | 28801 |
| YP_008050875.1 | NC_021298_p18 | tape measure | phrog_305 | tail length tape measure protein | tail | 1 | 11671 | 14994 |
| YP_008050890.1 | NC_021298_p33 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 25999 | 26436 |
| YP_008050916.1 | NC_021298_p59 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 43349 | 43933 |
| YP_008050888.1 | NC_021298_p31 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24319 | 25290 |
| YP_008050919.1 | NC_021298_p62 | hypothetical protein | phrog_9416 | unknown function | unknown function | -1 | 44471 | 44776 |
| YP_008050870.1 | NC_021298_p13 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 9164 | 9562 |
| YP_008050877.1 | NC_021298_p20 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 15859 | 17070 |
| YP_008050883.1 | NC_021298_p26 | hypothetical protein | phrog_1493 | endolysin | lysis | 1 | 21658 | 22752 |
| YP_008050879.1 | NC_021298_p22 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 17372 | 19357 |
| YP_008050868.1 | NC_021298_p11 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8383 | 8832 |
| YP_008050924.1 | NC_021298_p67 | HNH domain protein | phrog_4842 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46230 | 46703 |
| YP_008050915.1 | NC_021298_p58 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 43073 | 43309 |
| YP_008050906.1 | NC_021298_p49 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 35118 | 36695 |
| YP_008050861.1 | NC_021298_p4 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 1668 | 1916 |
| YP_008050930.1 | NC_021298_p73 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 49311 | 49739 |
| YP_008050871.1 | NC_021298_p14 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9562 | 10065 |
| YP_008050873.1 | NC_021298_p16 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 10952 | 11667 |
| YP_008050905.1 | NC_021298_p48 | Lsr2-like protein | phrog_6509 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | 1 | 34617 | 34832 |
| YP_008050878.1 | NC_021298_p21 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 17074 | 17370 |
| YP_008050863.1 | NC_021298_p6 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2381 | 4027 |
| YP_008050911.1 | NC_021298_p54 | DNA polymerase III subunit alpha | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 38282 | 41758 |
| YP_008050894.1 | NC_021298_p37 | hypothetical protein | phrog_4673 | unknown function | unknown function | 1 | 28228 | 28380 |
| YP_008050891.1 | NC_021298_p34 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 26509 | 26988 |
| YP_008050899.1 | NC_021298_p42 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 29844 | 30032 |
| YP_008050865.1 | NC_021298_p8 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5493 | 6605 |
| YP_008050887.1 | NC_021298_p30 | hypothetical protein | phrog_5250 | unknown function | unknown function | 1 | 24020 | 24322 |
| YP_008050910.1 | NC_021298_p53 | hypothetical protein | phrog_20783 | unknown function | unknown function | -1 | 37978 | 38265 |
| YP_008050893.1 | NC_021298_p36 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27869 | 28231 |
| YP_008050902.1 | NC_021298_p45 | hypothetical protein | phrog_3512 | sigma factor | transcription regulation | 1 | 31595 | 31993 |
| YP_008050921.1 | NC_021298_p64 | hypothetical protein | phrog_4785 | unknown function | unknown function | -1 | 45033 | 45317 |
| YP_008050904.1 | NC_021298_p47 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 32466 | 34556 |
| YP_008050866.1 | NC_021298_p9 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6609 | 7148 |
| YP_008050927.1 | NC_021298_p70 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 47556 | 47969 |
| YP_008050876.1 | NC_021298_p19 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 14998 | 15855 |
| YP_008050914.1 | NC_021298_p57 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 42558 | 42989 |
| YP_008050922.1 | NC_021298_p65 | hypothetical protein | phrog_4867 | unknown function | unknown function | -1 | 45401 | 45757 |
| YP_008050862.1 | NC_021298_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1935 | 2360 |
| YP_008050909.1 | NC_021298_p52 | hypothetical protein | phrog_5971 | unknown function | unknown function | -1 | 37799 | 37981 |
| YP_008050926.1 | NC_021298_p69 | hypothetical protein | phrog_4239 | unknown function | unknown function | -1 | 47010 | 47432 |
| YP_008050886.1 | NC_021298_p29 | immunity repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 23420 | 23872 |
| YP_008050901.1 | NC_021298_p44 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 31242 | 31595 |
| YP_008050932.1 | NC_021298_p75 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 50045 | 50422 |
| YP_008050898.1 | NC_021298_p41 | hypothetical protein | phrog_6217 | unknown function | unknown function | 1 | 29644 | 29817 |
| YP_008050896.1 | NC_021298_p39 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28635 | 29300 |
| YP_008050859.1 | NC_021298_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 726 | 1037 |
| YP_008050881.1 | NC_021298_p24 | hypothetical protein | phrog_988 | tail protein | tail | 1 | 19933 | 21279 |
| YP_008050882.1 | NC_021298_p25 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 21279 | 21632 |
| YP_008050869.1 | NC_021298_p12 | head-tail adaptor | phrog_320 | head closure Hc1 | connector | 1 | 8829 | 9164 |
| YP_008050928.1 | NC_021298_p71 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 47989 | 48114 |
| YP_008050931.1 | NC_021298_p74 | hypothetical protein | phrog_4485 | unknown function | unknown function | -1 | 49828 | 49947 |
| YP_008050880.1 | NC_021298_p23 | hypothetical protein | phrog_4817 | unknown function | unknown function | 1 | 19357 | 19857 |
| YP_008050925.1 | NC_021298_p68 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 46804 | 47007 |
| YP_008050884.1 | NC_021298_p27 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 22749 | 23018 |
| YP_008050913.1 | NC_021298_p56 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 42313 | 42546 |
| YP_008050860.1 | NC_021298_p3 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1432 | 1662 |
| YP_008050858.1 | NC_021298_p1 | hypothetical protein | phrog_4207 | unknown function | unknown function | -1 | 91 | 297 |
| YP_008050874.1 | NC_021298_p17 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 10952 | 11275 |
| YP_008050908.1 | NC_021298_p51 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 37521 | 37796 |
| YP_008050907.1 | NC_021298_p50 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 36808 | 37524 |
| YP_008050892.1 | NC_021298_p35 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 27045 | 27800 |
| YP_008050912.1 | NC_021298_p55 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 41774 | 42316 |
| YP_008050885.1 | NC_021298_p28 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 23073 | 23333 |