Genomic map of Streptomyces phage Lika (NC_021298)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021298
Definition
Streptomyces phage Lika, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Likavirus.
DB of origin
REFSEQ
Length
51252
Host Name
Streptomyces lividans
Host domain
Bacteria
Is prophage?
undef
Number of proteins
75
%GC
65.79
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008050929.1 NC_021298_p72 hypothetical protein phrog_4313 unknown function unknown function -1 48213 49190
YP_008050903.1 NC_021298_p46 hypothetical protein phrog_4123 unknown function unknown function 1 31990 32367
YP_008050920.1 NC_021298_p63 hypothetical protein phrog_9778 unknown function unknown function -1 44860 45036
YP_008050867.1 NC_021298_p10 major capsid protein phrog_283 major head protein head and packaging 1 7219 8307
YP_008050889.1 NC_021298_p32 hypothetical protein phrog_3912 unknown function unknown function 1 25413 25931
YP_008050900.1 NC_021298_p43 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 30025 31215
YP_008050872.1 NC_021298_p15 hypothetical protein phrog_117 major tail protein tail 1 10082 10837
YP_008050897.1 NC_021298_p40 hypothetical protein phrog_4022 unknown function unknown function 1 29297 29647
YP_008050918.1 NC_021298_p61 hypothetical protein phrog_3991 unknown function unknown function -1 44232 44474
YP_008050917.1 NC_021298_p60 hypothetical protein phrog_5209 unknown function unknown function -1 43930 44235
YP_008050923.1 NC_021298_p66 hypothetical protein phrog_586 unknown function unknown function -1 45772 46143
YP_008050864.1 NC_021298_p7 portal protein phrog_104 portal protein head and packaging 1 4060 5496
YP_008050895.1 NC_021298_p38 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism 1 28382 28801
YP_008050875.1 NC_021298_p18 tape measure phrog_305 tail length tape measure protein tail 1 11671 14994
YP_008050890.1 NC_021298_p33 hypothetical protein phrog_1288 unknown function unknown function 1 25999 26436
YP_008050916.1 NC_021298_p59 dNMP kinase phrog_139 deoxynucleoside monophosphate kinase other -1 43349 43933
YP_008050888.1 NC_021298_p31 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 24319 25290
YP_008050919.1 NC_021298_p62 hypothetical protein phrog_9416 unknown function unknown function -1 44471 44776
YP_008050870.1 NC_021298_p13 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 9164 9562
YP_008050877.1 NC_021298_p20 hypothetical protein phrog_538 minor tail protein tail 1 15859 17070
YP_008050883.1 NC_021298_p26 hypothetical protein phrog_1493 endolysin lysis 1 21658 22752
YP_008050879.1 NC_021298_p22 hypothetical protein phrog_4013 unknown function unknown function 1 17372 19357
YP_008050868.1 NC_021298_p11 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 8383 8832
YP_008050924.1 NC_021298_p67 HNH domain protein phrog_4842 HNH endonuclease DNA, RNA and nucleotide metabolism -1 46230 46703
YP_008050915.1 NC_021298_p58 hypothetical protein phrog_4024 unknown function unknown function -1 43073 43309
YP_008050906.1 NC_021298_p49 serine integrase phrog_95 integrase integration and excision 1 35118 36695
YP_008050861.1 NC_021298_p4 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 1668 1916
YP_008050930.1 NC_021298_p73 hypothetical protein phrog_3994 unknown function unknown function -1 49311 49739
YP_008050871.1 NC_021298_p14 hypothetical protein phrog_123 tail terminator connector 1 9562 10065
YP_008050873.1 NC_021298_p16 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 10952 11667
YP_008050905.1 NC_021298_p48 Lsr2-like protein phrog_6509 Lsr2-like DNA bridging protein DNA, RNA and nucleotide metabolism 1 34617 34832
YP_008050878.1 NC_021298_p21 hypothetical protein phrog_1276 unknown function unknown function 1 17074 17370
YP_008050863.1 NC_021298_p6 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2381 4027
YP_008050911.1 NC_021298_p54 DNA polymerase III subunit alpha phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 38282 41758
YP_008050894.1 NC_021298_p37 hypothetical protein phrog_4673 unknown function unknown function 1 28228 28380
YP_008050891.1 NC_021298_p34 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 26509 26988
YP_008050899.1 NC_021298_p42 hypothetical protein phrog_3979 unknown function unknown function 1 29844 30032
YP_008050865.1 NC_021298_p8 hypothetical protein phrog_193 head maturation protease head and packaging 1 5493 6605
YP_008050887.1 NC_021298_p30 hypothetical protein phrog_5250 unknown function unknown function 1 24020 24322
YP_008050910.1 NC_021298_p53 hypothetical protein phrog_20783 unknown function unknown function -1 37978 38265
YP_008050893.1 NC_021298_p36 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 27869 28231
YP_008050902.1 NC_021298_p45 hypothetical protein phrog_3512 sigma factor transcription regulation 1 31595 31993
YP_008050921.1 NC_021298_p64 hypothetical protein phrog_4785 unknown function unknown function -1 45033 45317
YP_008050904.1 NC_021298_p47 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 32466 34556
YP_008050866.1 NC_021298_p9 scaffold protein phrog_233 head scaffolding protein head and packaging 1 6609 7148
YP_008050927.1 NC_021298_p70 hypothetical protein phrog_2355 unknown function unknown function -1 47556 47969
YP_008050876.1 NC_021298_p19 hypothetical protein phrog_33 distal tail protein Dit tail 1 14998 15855
YP_008050914.1 NC_021298_p57 hypothetical protein phrog_3965 unknown function unknown function -1 42558 42989
YP_008050922.1 NC_021298_p65 hypothetical protein phrog_4867 unknown function unknown function -1 45401 45757
YP_008050862.1 NC_021298_p5 hypothetical protein phrog_226 minor tail protein tail 1 1935 2360
YP_008050909.1 NC_021298_p52 hypothetical protein phrog_5971 unknown function unknown function -1 37799 37981
YP_008050926.1 NC_021298_p69 hypothetical protein phrog_4239 unknown function unknown function -1 47010 47432
YP_008050886.1 NC_021298_p29 immunity repressor phrog_3929 transcriptional repressor transcription regulation 1 23420 23872
YP_008050901.1 NC_021298_p44 hypothetical protein phrog_1340 unknown function unknown function 1 31242 31595
YP_008050932.1 NC_021298_p75 hypothetical protein phrog_2563 unknown function unknown function -1 50045 50422
YP_008050898.1 NC_021298_p41 hypothetical protein phrog_6217 unknown function unknown function 1 29644 29817
YP_008050896.1 NC_021298_p39 DNA primase phrog_849 DNA primase DNA, RNA and nucleotide metabolism 1 28635 29300
YP_008050859.1 NC_021298_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 726 1037
YP_008050881.1 NC_021298_p24 hypothetical protein phrog_988 tail protein tail 1 19933 21279
YP_008050882.1 NC_021298_p25 hypothetical protein phrog_3534 unknown function unknown function 1 21279 21632
YP_008050869.1 NC_021298_p12 head-tail adaptor phrog_320 head closure Hc1 connector 1 8829 9164
YP_008050928.1 NC_021298_p71 hypothetical protein phrog_4275 unknown function unknown function -1 47989 48114
YP_008050931.1 NC_021298_p74 hypothetical protein phrog_4485 unknown function unknown function -1 49828 49947
YP_008050880.1 NC_021298_p23 hypothetical protein phrog_4817 unknown function unknown function 1 19357 19857
YP_008050925.1 NC_021298_p68 hypothetical protein phrog_3908 unknown function unknown function -1 46804 47007
YP_008050884.1 NC_021298_p27 hypothetical protein phrog_4092 unknown function unknown function 1 22749 23018
YP_008050913.1 NC_021298_p56 hypothetical protein phrog_3424 unknown function unknown function -1 42313 42546
YP_008050860.1 NC_021298_p3 hypothetical protein phrog_3555 unknown function unknown function 1 1432 1662
YP_008050858.1 NC_021298_p1 hypothetical protein phrog_4207 unknown function unknown function -1 91 297
YP_008050874.1 NC_021298_p17 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 10952 11275
YP_008050908.1 NC_021298_p51 hypothetical protein phrog_4071 unknown function unknown function -1 37521 37796
YP_008050907.1 NC_021298_p50 ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 36808 37524
YP_008050892.1 NC_021298_p35 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 27045 27800
YP_008050912.1 NC_021298_p55 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 41774 42316
YP_008050885.1 NC_021298_p28 hypothetical protein phrog_4061 unknown function unknown function -1 23073 23333