| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021300 |
Definition |
Pseudoalteromonas phage RIO-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
43882 |
Host Name |
Pseudoalteromonas marina |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
44.72 |
Number of singletons |
23 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008051108.1 | NC_021300_p38 | hypothetical protein | phrog_8168 | unknown function | unknown function | -1 | 28379 | 28819 |
| YP_008051124.1 | NC_021300_p54 | hypothetical protein | phrog_8035 | unknown function | unknown function | -1 | 40499 | 41020 |
| YP_008051093.1 | NC_021300_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16167 | 16370 |
| YP_008051097.1 | NC_021300_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18045 | 18236 |
| YP_008051104.1 | NC_021300_p34 | RecBCD inhibitor | singleton | unknown function | unknown function | 1 | 20893 | 21081 |
| YP_008051106.1 | NC_021300_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21766 | 23547 |
| YP_008051099.1 | NC_021300_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18479 | 19006 |
| YP_008051087.1 | NC_021300_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10525 | 10665 |
| YP_008051116.1 | NC_021300_p46 | hypothetical protein | phrog_7592 | tail protein | tail | -1 | 33448 | 34200 |
| YP_008051095.1 | NC_021300_p25 | hypothetical protein | phrog_1843 | unknown function | unknown function | 1 | 17219 | 17707 |
| YP_008051075.1 | NC_021300_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2389 | 2547 |
| YP_008051102.1 | NC_021300_p32 | hypothetical protein | phrog_20106 | unknown function | unknown function | 1 | 20188 | 20412 |
| YP_008051085.1 | NC_021300_p15 | hypothetical protein | phrog_13152 | unknown function | unknown function | 1 | 9888 | 10307 |
| YP_008051122.1 | NC_021300_p52 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 38615 | 40195 |
| YP_008051094.1 | NC_021300_p24 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16357 | 17226 |
| YP_008051082.1 | NC_021300_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7737 | 8219 |
| YP_008051100.1 | NC_021300_p30 | endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 18996 | 19436 |
| YP_008051084.1 | NC_021300_p14 | ATP-grasp enzyme | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 9047 | 9895 |
| YP_008051081.1 | NC_021300_p11 | hypothetical protein | phrog_29477 | unknown function | unknown function | 1 | 7457 | 7744 |
| YP_008051113.1 | NC_021300_p43 | hypothetical protein | phrog_8270 | unknown function | unknown function | -1 | 31726 | 32268 |
| YP_008051072.1 | NC_021300_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1706 | 1858 |
| YP_008051080.1 | NC_021300_p10 | COOH NH2 ligase | phrog_3815 | COOH.NH2 ligase | other | 1 | 6264 | 7460 |
| YP_008051091.1 | NC_021300_p21 | T7-like DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13459 | 15498 |
| YP_008051121.1 | NC_021300_p51 | portal protein | phrog_332 | head-tail adaptor | connector | -1 | 36918 | 38618 |
| YP_008051119.1 | NC_021300_p49 | scaffold protein | singleton | unknown function | unknown function | -1 | 35796 | 36482 |
| YP_008051109.1 | NC_021300_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28821 | 29111 |
| YP_008051117.1 | NC_021300_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34309 | 34827 |
| YP_008051092.1 | NC_021300_p22 | ssDNA binding protein | phrog_862 | unknown function | unknown function | 1 | 15511 | 16167 |
| YP_008051120.1 | NC_021300_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36475 | 36756 |
| YP_008051074.1 | NC_021300_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2057 | 2401 |
| YP_008051090.1 | NC_021300_p20 | hypothetical protein | phrog_29477 | unknown function | unknown function | 1 | 13205 | 13459 |
| YP_008051105.1 | NC_021300_p35 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 21166 | 21765 |
| YP_008051112.1 | NC_021300_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30604 | 31725 |
| YP_008051110.1 | NC_021300_p40 | T7-like tubular tail B family-like protein | singleton | unknown function | unknown function | -1 | 29108 | 30289 |
| YP_008051076.1 | NC_021300_p6 | spanin | phrog_36157 | unknown function | unknown function | 1 | 2544 | 3155 |
| YP_008051086.1 | NC_021300_p16 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 10304 | 10525 |
| YP_008051114.1 | NC_021300_p44 | T7-like tubular tail B family-like protein | singleton | unknown function | unknown function | -1 | 32277 | 33239 |
| YP_008051078.1 | NC_021300_p8 | gamma-glutamyl cyclotransferase | phrog_2520 | gamma-glutamyl cyclotransferase | moron, auxiliary metabolic gene and host takeover | 1 | 4490 | 4900 |
| YP_008051123.1 | NC_021300_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40204 | 40497 |
| YP_008051077.1 | NC_021300_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3469 | 4311 |
| YP_008051089.1 | NC_021300_p19 | sigma factor | singleton | unknown function | unknown function | 1 | 12547 | 13212 |
| YP_008051101.1 | NC_021300_p31 | 3'-5' exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 19433 | 20188 |
| YP_008051079.1 | NC_021300_p9 | glutamine amidotransferase | phrog_4736 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | 1 | 5005 | 6267 |
| YP_008051083.1 | NC_021300_p13 | amidoligase | phrog_2443 | amidoligase enzyme | other | 1 | 8179 | 9444 |
| YP_008051073.1 | NC_021300_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1851 | 1973 |
| YP_008051103.1 | NC_021300_p33 | endolysin | phrog_3108 | unknown function | unknown function | 1 | 20414 | 20896 |
| YP_008051107.1 | NC_021300_p37 | hypothetical protein | phrog_12003 | internal virion protein | head and packaging | -1 | 23547 | 28370 |
| YP_008051088.1 | NC_021300_p18 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 10665 | 12550 |
| YP_008051071.1 | NC_021300_p1 | hypothetical protein | phrog_14737 | unknown function | unknown function | 1 | 1159 | 1641 |
| YP_008051118.1 | NC_021300_p48 | major capsid protein | phrog_267 | major head protein | head and packaging | -1 | 34836 | 35792 |
| YP_008051096.1 | NC_021300_p26 | MazG ppGpp pyrophosphohydrolase | phrog_715 | MazG-like pyrophosphatase | other | 1 | 17717 | 18058 |
| YP_008051115.1 | NC_021300_p45 | hypothetical protein | phrog_9082 | unknown function | unknown function | -1 | 33239 | 33448 |
| YP_008051098.1 | NC_021300_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18233 | 18460 |
| YP_008051125.1 | NC_021300_p55 | virion structural protein | singleton | unknown function | unknown function | -1 | 41020 | 43041 |
| YP_008051111.1 | NC_021300_p41 | hypothetical protein | phrog_6699 | unknown function | unknown function | -1 | 30317 | 30607 |
| YP_008051126.1 | NC_021300_p56 | hypothetical protein | phrog_3427 | holin | lysis | -1 | 43054 | 43464 |