Genomic map of Pseudoalteromonas phage RIO-1 (NC_021300)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021300
Definition
Pseudoalteromonas phage RIO-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
43882
Host Name
Pseudoalteromonas marina
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
44.72
Number of singletons
23
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008051108.1 NC_021300_p38 hypothetical protein phrog_8168 unknown function unknown function -1 28379 28819
YP_008051124.1 NC_021300_p54 hypothetical protein phrog_8035 unknown function unknown function -1 40499 41020
YP_008051093.1 NC_021300_p23 hypothetical protein singleton unknown function unknown function 1 16167 16370
YP_008051097.1 NC_021300_p27 hypothetical protein singleton unknown function unknown function 1 18045 18236
YP_008051104.1 NC_021300_p34 RecBCD inhibitor singleton unknown function unknown function 1 20893 21081
YP_008051106.1 NC_021300_p36 hypothetical protein singleton unknown function unknown function -1 21766 23547
YP_008051099.1 NC_021300_p29 hypothetical protein singleton unknown function unknown function 1 18479 19006
YP_008051087.1 NC_021300_p17 hypothetical protein singleton unknown function unknown function 1 10525 10665
YP_008051116.1 NC_021300_p46 hypothetical protein phrog_7592 tail protein tail -1 33448 34200
YP_008051095.1 NC_021300_p25 hypothetical protein phrog_1843 unknown function unknown function 1 17219 17707
YP_008051075.1 NC_021300_p5 hypothetical protein singleton unknown function unknown function 1 2389 2547
YP_008051102.1 NC_021300_p32 hypothetical protein phrog_20106 unknown function unknown function 1 20188 20412
YP_008051085.1 NC_021300_p15 hypothetical protein phrog_13152 unknown function unknown function 1 9888 10307
YP_008051122.1 NC_021300_p52 terminase large subunit phrog_38 terminase large subunit head and packaging -1 38615 40195
YP_008051094.1 NC_021300_p24 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16357 17226
YP_008051082.1 NC_021300_p12 hypothetical protein singleton unknown function unknown function 1 7737 8219
YP_008051100.1 NC_021300_p30 endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 18996 19436
YP_008051084.1 NC_021300_p14 ATP-grasp enzyme phrog_2599 ribosomal protein S6 glutaminyl transferase moron, auxiliary metabolic gene and host takeover 1 9047 9895
YP_008051081.1 NC_021300_p11 hypothetical protein phrog_29477 unknown function unknown function 1 7457 7744
YP_008051113.1 NC_021300_p43 hypothetical protein phrog_8270 unknown function unknown function -1 31726 32268
YP_008051072.1 NC_021300_p2 hypothetical protein singleton unknown function unknown function 1 1706 1858
YP_008051080.1 NC_021300_p10 COOH NH2 ligase phrog_3815 COOH.NH2 ligase other 1 6264 7460
YP_008051091.1 NC_021300_p21 T7-like DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13459 15498
YP_008051121.1 NC_021300_p51 portal protein phrog_332 head-tail adaptor connector -1 36918 38618
YP_008051119.1 NC_021300_p49 scaffold protein singleton unknown function unknown function -1 35796 36482
YP_008051109.1 NC_021300_p39 hypothetical protein singleton unknown function unknown function -1 28821 29111
YP_008051117.1 NC_021300_p47 hypothetical protein singleton unknown function unknown function -1 34309 34827
YP_008051092.1 NC_021300_p22 ssDNA binding protein phrog_862 unknown function unknown function 1 15511 16167
YP_008051120.1 NC_021300_p50 hypothetical protein singleton unknown function unknown function -1 36475 36756
YP_008051074.1 NC_021300_p4 hypothetical protein singleton unknown function unknown function 1 2057 2401
YP_008051090.1 NC_021300_p20 hypothetical protein phrog_29477 unknown function unknown function 1 13205 13459
YP_008051105.1 NC_021300_p35 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 21166 21765
YP_008051112.1 NC_021300_p42 hypothetical protein singleton unknown function unknown function -1 30604 31725
YP_008051110.1 NC_021300_p40 T7-like tubular tail B family-like protein singleton unknown function unknown function -1 29108 30289
YP_008051076.1 NC_021300_p6 spanin phrog_36157 unknown function unknown function 1 2544 3155
YP_008051086.1 NC_021300_p16 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 10304 10525
YP_008051114.1 NC_021300_p44 T7-like tubular tail B family-like protein singleton unknown function unknown function -1 32277 33239
YP_008051078.1 NC_021300_p8 gamma-glutamyl cyclotransferase phrog_2520 gamma-glutamyl cyclotransferase moron, auxiliary metabolic gene and host takeover 1 4490 4900
YP_008051123.1 NC_021300_p53 hypothetical protein singleton unknown function unknown function -1 40204 40497
YP_008051077.1 NC_021300_p7 hypothetical protein singleton unknown function unknown function 1 3469 4311
YP_008051089.1 NC_021300_p19 sigma factor singleton unknown function unknown function 1 12547 13212
YP_008051101.1 NC_021300_p31 3'-5' exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 19433 20188
YP_008051079.1 NC_021300_p9 glutamine amidotransferase phrog_4736 L-glutamine-D-fructose-6-phosphate aminotransferase other 1 5005 6267
YP_008051083.1 NC_021300_p13 amidoligase phrog_2443 amidoligase enzyme other 1 8179 9444
YP_008051073.1 NC_021300_p3 hypothetical protein singleton unknown function unknown function 1 1851 1973
YP_008051103.1 NC_021300_p33 endolysin phrog_3108 unknown function unknown function 1 20414 20896
YP_008051107.1 NC_021300_p37 hypothetical protein phrog_12003 internal virion protein head and packaging -1 23547 28370
YP_008051088.1 NC_021300_p18 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 10665 12550
YP_008051071.1 NC_021300_p1 hypothetical protein phrog_14737 unknown function unknown function 1 1159 1641
YP_008051118.1 NC_021300_p48 major capsid protein phrog_267 major head protein head and packaging -1 34836 35792
YP_008051096.1 NC_021300_p26 MazG ppGpp pyrophosphohydrolase phrog_715 MazG-like pyrophosphatase other 1 17717 18058
YP_008051115.1 NC_021300_p45 hypothetical protein phrog_9082 unknown function unknown function -1 33239 33448
YP_008051098.1 NC_021300_p28 hypothetical protein singleton unknown function unknown function 1 18233 18460
YP_008051125.1 NC_021300_p55 virion structural protein singleton unknown function unknown function -1 41020 43041
YP_008051111.1 NC_021300_p41 hypothetical protein phrog_6699 unknown function unknown function -1 30317 30607
YP_008051126.1 NC_021300_p56 hypothetical protein phrog_3427 holin lysis -1 43054 43464