| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021301 |
Definition |
Mycobacterium phage SiSi, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
56279 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
61.49 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008051162.1 | NC_021301_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30181 | 30492 |
| YP_008051198.1 | NC_021301_p72 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 46694 | 46957 |
| YP_008051216.1 | NC_021301_p90 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51409 | 52080 |
| YP_008051145.1 | NC_021301_p19 | D-ala-D-ala-carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19923 | 21809 |
| YP_008051139.1 | NC_021301_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8565 | 9116 |
| YP_008051220.1 | NC_021301_p94 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 52735 | 53136 |
| YP_008051165.1 | NC_021301_p39 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 30826 | 30984 |
| YP_008051189.1 | NC_021301_p63 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41202 | 41558 |
| YP_008051141.1 | NC_021301_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13003 | 14712 |
| YP_008051144.1 | NC_021301_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17389 | 19926 |
| YP_008051186.1 | NC_021301_p60 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40143 | 40373 |
| YP_008051176.1 | NC_021301_p50 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 36603 | 36791 |
| YP_008051135.1 | NC_021301_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6766 | 7095 |
| YP_008051146.1 | NC_021301_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21806 | 22972 |
| YP_008051167.1 | NC_021301_p41 | hypothetical protein | phrog_5254 | unknown function | unknown function | -1 | 31179 | 31421 |
| YP_008051147.1 | NC_021301_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22990 | 23331 |
| YP_008051194.1 | NC_021301_p68 | exonuclease | phrog_2259 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 44708 | 45361 |
| YP_008051201.1 | NC_021301_p75 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 47345 | 47695 |
| YP_008051161.1 | NC_021301_p35 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29363 | 30184 |
| YP_008051171.1 | NC_021301_p45 | immunity repressor | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 34052 | 34585 |
| YP_008051130.1 | NC_021301_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3597 | 4352 |
| YP_008051168.1 | NC_021301_p42 | hypothetical protein | phrog_22055 | unknown function | unknown function | -1 | 31418 | 31594 |
| YP_008051209.1 | NC_021301_p83 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 49822 | 50016 |
| YP_008051138.1 | NC_021301_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8565 | 9501 |
| YP_008051163.1 | NC_021301_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30485 | 30577 |
| YP_008051164.1 | NC_021301_p38 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 30680 | 30826 |
| YP_008051206.1 | NC_021301_p80 | hypothetical protein | phrog_14412 | unknown function | unknown function | 1 | 48896 | 49396 |
| YP_008051202.1 | NC_021301_p76 | hypothetical protein | phrog_2591 | unknown function | unknown function | 1 | 47688 | 47879 |
| YP_008051187.1 | NC_021301_p61 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 40370 | 40630 |
| YP_008051210.1 | NC_021301_p84 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 50016 | 50279 |
| YP_008051132.1 | NC_021301_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5047 | 5868 |
| YP_008051214.1 | NC_021301_p88 | hypothetical protein | phrog_6194 | unknown function | unknown function | 1 | 50773 | 50850 |
| YP_008051148.1 | NC_021301_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23353 | 23607 |
| YP_008051205.1 | NC_021301_p79 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48633 | 48899 |
| YP_008051181.1 | NC_021301_p55 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 38369 | 38863 |
| YP_008051221.1 | NC_021301_p95 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53133 | 53375 |
| YP_008051169.1 | NC_021301_p43 | integrase (y-int) | phrog_1 | integrase | integration and excision | 1 | 31969 | 33258 |
| YP_008051212.1 | NC_021301_p86 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 50460 | 50597 |
| YP_008051134.1 | NC_021301_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6431 | 6763 |
| YP_008051204.1 | NC_021301_p78 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 48135 | 48548 |
| YP_008051154.1 | NC_021301_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25864 | 26004 |
| YP_008051196.1 | NC_021301_p70 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 45708 | 45842 |
| YP_008051160.1 | NC_021301_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29143 | 29376 |
| YP_008051143.1 | NC_021301_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16562 | 17392 |
| YP_008051170.1 | NC_021301_p44 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33334 | 33789 |
| YP_008051199.1 | NC_021301_p73 | hypothetical protein | phrog_14414 | unknown function | unknown function | 1 | 46954 | 47157 |
| YP_008051157.1 | NC_021301_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27498 | 28499 |
| YP_008051219.1 | NC_021301_p93 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 52547 | 52738 |
| YP_008051156.1 | NC_021301_p30 | lysin A | phrog_700 | endolysin | lysis | 1 | 26302 | 27498 |
| YP_008051203.1 | NC_021301_p77 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 47876 | 48037 |
| YP_008051133.1 | NC_021301_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5868 | 6434 |
| YP_008051136.1 | NC_021301_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7082 | 7489 |
| YP_008051128.1 | NC_021301_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 572 | 2209 |
| YP_008051150.1 | NC_021301_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24255 | 25079 |
| YP_008051175.1 | NC_021301_p49 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36409 | 36606 |
| YP_008051140.1 | NC_021301_p14 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9520 | 13002 |
| YP_008051213.1 | NC_021301_p87 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 50600 | 50713 |
| YP_008051159.1 | NC_021301_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28745 | 29119 |
| YP_008051180.1 | NC_021301_p54 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38022 | 38369 |
| YP_008051155.1 | NC_021301_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26072 | 26305 |
| YP_008051129.1 | NC_021301_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2240 | 3610 |
| YP_008051131.1 | NC_021301_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4435 | 5028 |
| YP_008051151.1 | NC_021301_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25085 | 25282 |
| YP_008051142.1 | NC_021301_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14795 | 16504 |
| YP_008051174.1 | NC_021301_p48 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36104 | 36322 |
| YP_008051223.1 | NC_021301_p97 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 54985 | 55191 |
| YP_008051172.1 | NC_021301_p46 | HTH DNA binding domain protein | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 34739 | 35044 |
| YP_008051211.1 | NC_021301_p85 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50276 | 50455 |
| YP_008051184.1 | NC_021301_p58 | HTH DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39623 | 39988 |
| YP_008051192.1 | NC_021301_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44321 | 44527 |
| YP_008051183.1 | NC_021301_p57 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39342 | 39626 |
| YP_008051197.1 | NC_021301_p71 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45846 | 46697 |
| YP_008051215.1 | NC_021301_p89 | GIY-YIG DNA binding domain from nucleotide excision repair endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 50873 | 51412 |
| YP_008051208.1 | NC_021301_p82 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 49613 | 49825 |
| YP_008051207.1 | NC_021301_p81 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 49393 | 49560 |
| YP_008051149.1 | NC_021301_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23620 | 24258 |
| YP_008051137.1 | NC_021301_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7618 | 8427 |
| YP_008051218.1 | NC_021301_p92 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52392 | 52550 |
| YP_008051153.1 | NC_021301_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25721 | 25867 |
| YP_008051222.1 | NC_021301_p96 | polypeptide N-acetylgalactosaminyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53372 | 54982 |
| YP_008051217.1 | NC_021301_p91 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52222 | 52386 |
| YP_008051188.1 | NC_021301_p62 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40627 | 41205 |
| YP_008051200.1 | NC_021301_p74 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 47154 | 47348 |
| YP_008051127.1 | NC_021301_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_008051182.1 | NC_021301_p56 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 38860 | 39345 |
| YP_008051185.1 | NC_021301_p59 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 39988 | 40143 |
| YP_008051195.1 | NC_021301_p69 | methylase | phrog_3008 | DNA methyltransferase | other | 1 | 45358 | 45711 |
| YP_008051178.1 | NC_021301_p52 | hypothetical protein | phrog_8015 | unknown function | unknown function | 1 | 37384 | 37665 |
| YP_008051224.1 | NC_021301_p98 | glycosyltransferase-like domain protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55188 | 55811 |
| YP_008051225.1 | NC_021301_p99 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 55811 | 56137 |
| YP_008051191.1 | NC_021301_p65 | DNA methylase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 41752 | 44313 |
| YP_008051190.1 | NC_021301_p64 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 41555 | 41758 |
| YP_008051177.1 | NC_021301_p51 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36788 | 37366 |
| YP_008051152.1 | NC_021301_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25430 | 25714 |
| YP_008051179.1 | NC_021301_p53 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 37744 | 38025 |
| YP_008051173.1 | NC_021301_p47 | prophage antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35103 | 36107 |
| YP_008051158.1 | NC_021301_p32 | holin | phrog_443 | holin | lysis | 1 | 28515 | 28748 |
| YP_008051193.1 | NC_021301_p67 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 44560 | 44715 |
| YP_008051166.1 | NC_021301_p40 | HTH DNA binding domain protein | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30981 | 31178 |