Genomic map of Mycobacterium phage SiSi (NC_021301)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021301
Definition
Mycobacterium phage SiSi, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
56279
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
99
%GC
61.49
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008051162.1 NC_021301_p36 hypothetical protein phrog_1791 unknown function unknown function 1 30181 30492
YP_008051198.1 NC_021301_p72 hypothetical protein phrog_2080 unknown function unknown function 1 46694 46957
YP_008051216.1 NC_021301_p90 hypothetical protein phrog_1467 unknown function unknown function 1 51409 52080
YP_008051145.1 NC_021301_p19 D-ala-D-ala-carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 19923 21809
YP_008051139.1 NC_021301_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8565 9116
YP_008051220.1 NC_021301_p94 hypothetical protein phrog_1186 unknown function unknown function 1 52735 53136
YP_008051165.1 NC_021301_p39 hypothetical protein phrog_2437 unknown function unknown function -1 30826 30984
YP_008051189.1 NC_021301_p63 HNH endonuclease domain protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41202 41558
YP_008051141.1 NC_021301_p15 minor tail protein phrog_106 minor tail protein tail 1 13003 14712
YP_008051144.1 NC_021301_p18 minor tail protein phrog_346 minor tail protein tail 1 17389 19926
YP_008051186.1 NC_021301_p60 hypothetical protein phrog_1834 unknown function unknown function 1 40143 40373
YP_008051176.1 NC_021301_p50 hypothetical protein phrog_1816 unknown function unknown function 1 36603 36791
YP_008051135.1 NC_021301_p9 hypothetical protein phrog_1929 head-tail connector protein connector 1 6766 7095
YP_008051146.1 NC_021301_p20 hypothetical protein phrog_2106 minor tail protein tail 1 21806 22972
YP_008051167.1 NC_021301_p41 hypothetical protein phrog_5254 unknown function unknown function -1 31179 31421
YP_008051147.1 NC_021301_p21 hypothetical protein phrog_240 head protein head and packaging 1 22990 23331
YP_008051194.1 NC_021301_p68 exonuclease phrog_2259 Rnase H DNA, RNA and nucleotide metabolism 1 44708 45361
YP_008051201.1 NC_021301_p75 hypothetical protein phrog_1546 unknown function unknown function 1 47345 47695
YP_008051161.1 NC_021301_p35 DnaQ-like exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29363 30184
YP_008051171.1 NC_021301_p45 immunity repressor phrog_3949 transcriptional repressor transcription regulation -1 34052 34585
YP_008051130.1 NC_021301_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3597 4352
YP_008051168.1 NC_021301_p42 hypothetical protein phrog_22055 unknown function unknown function -1 31418 31594
YP_008051209.1 NC_021301_p83 hypothetical protein phrog_1901 unknown function unknown function 1 49822 50016
YP_008051138.1 NC_021301_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8565 9501
YP_008051163.1 NC_021301_p37 hypothetical protein phrog_1839 unknown function unknown function 1 30485 30577
YP_008051164.1 NC_021301_p38 hypothetical protein phrog_3693 unknown function unknown function -1 30680 30826
YP_008051206.1 NC_021301_p80 hypothetical protein phrog_14412 unknown function unknown function 1 48896 49396
YP_008051202.1 NC_021301_p76 hypothetical protein phrog_2591 unknown function unknown function 1 47688 47879
YP_008051187.1 NC_021301_p61 hypothetical protein phrog_2632 unknown function unknown function 1 40370 40630
YP_008051210.1 NC_021301_p84 hypothetical protein phrog_6625 unknown function unknown function 1 50016 50279
YP_008051132.1 NC_021301_p6 major capsid protein phrog_267 major head protein head and packaging 1 5047 5868
YP_008051214.1 NC_021301_p88 hypothetical protein phrog_6194 unknown function unknown function 1 50773 50850
YP_008051148.1 NC_021301_p22 hypothetical protein phrog_2005 minor tail protein tail 1 23353 23607
YP_008051205.1 NC_021301_p79 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 48633 48899
YP_008051181.1 NC_021301_p55 WhiB phrog_1333 unknown function unknown function 1 38369 38863
YP_008051221.1 NC_021301_p95 hypothetical protein phrog_1385 unknown function unknown function 1 53133 53375
YP_008051169.1 NC_021301_p43 integrase (y-int) phrog_1 integrase integration and excision 1 31969 33258
YP_008051212.1 NC_021301_p86 hypothetical protein phrog_1545 unknown function unknown function 1 50460 50597
YP_008051134.1 NC_021301_p8 hypothetical protein phrog_763 head-tail adaptor connector 1 6431 6763
YP_008051204.1 NC_021301_p78 hypothetical protein phrog_647 unknown function unknown function 1 48135 48548
YP_008051154.1 NC_021301_p28 hypothetical protein phrog_1172 unknown function unknown function 1 25864 26004
YP_008051196.1 NC_021301_p70 hypothetical protein phrog_2451 unknown function unknown function 1 45708 45842
YP_008051160.1 NC_021301_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29143 29376
YP_008051143.1 NC_021301_p17 minor tail protein phrog_732 minor tail protein tail 1 16562 17392
YP_008051170.1 NC_021301_p44 hypothetical protein phrog_1948 unknown function unknown function -1 33334 33789
YP_008051199.1 NC_021301_p73 hypothetical protein phrog_14414 unknown function unknown function 1 46954 47157
YP_008051157.1 NC_021301_p31 lysin B phrog_102 endolysin lysis 1 27498 28499
YP_008051219.1 NC_021301_p93 hypothetical protein phrog_3813 unknown function unknown function 1 52547 52738
YP_008051156.1 NC_021301_p30 lysin A phrog_700 endolysin lysis 1 26302 27498
YP_008051203.1 NC_021301_p77 hypothetical protein phrog_3647 unknown function unknown function 1 47876 48037
YP_008051133.1 NC_021301_p7 hypothetical protein phrog_2377 head-tail adaptor Ad1 connector 1 5868 6434
YP_008051136.1 NC_021301_p10 hypothetical protein phrog_813 head-tail adaptor connector 1 7082 7489
YP_008051128.1 NC_021301_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 572 2209
YP_008051150.1 NC_021301_p24 hypothetical protein phrog_754 minor tail protein tail 1 24255 25079
YP_008051175.1 NC_021301_p49 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 36409 36606
YP_008051140.1 NC_021301_p14 tapemeasure phrog_1942 tail length tape measure protein tail 1 9520 13002
YP_008051213.1 NC_021301_p87 hypothetical protein phrog_4126 unknown function unknown function 1 50600 50713
YP_008051159.1 NC_021301_p33 hypothetical protein phrog_404 minor tail protein tail 1 28745 29119
YP_008051180.1 NC_021301_p54 hypothetical protein phrog_658 unknown function unknown function 1 38022 38369
YP_008051155.1 NC_021301_p29 hypothetical protein phrog_747 unknown function unknown function 1 26072 26305
YP_008051129.1 NC_021301_p3 portal protein phrog_104 portal protein head and packaging 1 2240 3610
YP_008051131.1 NC_021301_p5 scaffolding protein phrog_2592 head scaffolding protein head and packaging 1 4435 5028
YP_008051151.1 NC_021301_p25 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25085 25282
YP_008051142.1 NC_021301_p16 minor tail protein phrog_110 minor tail protein tail 1 14795 16504
YP_008051174.1 NC_021301_p48 hypothetical protein phrog_2025 unknown function unknown function 1 36104 36322
YP_008051223.1 NC_021301_p97 hypothetical protein phrog_1693 unknown function unknown function 1 54985 55191
YP_008051172.1 NC_021301_p46 HTH DNA binding domain protein phrog_6267 transcriptional repressor transcription regulation 1 34739 35044
YP_008051211.1 NC_021301_p85 hypothetical protein phrog_1091 unknown function unknown function 1 50276 50455
YP_008051184.1 NC_021301_p58 HTH DNA binding domain protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 39623 39988
YP_008051192.1 NC_021301_p66 hypothetical protein singleton unknown function unknown function 1 44321 44527
YP_008051183.1 NC_021301_p57 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 39342 39626
YP_008051197.1 NC_021301_p71 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 45846 46697
YP_008051215.1 NC_021301_p89 GIY-YIG DNA binding domain from nucleotide excision repair endonuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 50873 51412
YP_008051208.1 NC_021301_p82 hypothetical protein phrog_2939 unknown function unknown function 1 49613 49825
YP_008051207.1 NC_021301_p81 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision 1 49393 49560
YP_008051149.1 NC_021301_p23 hypothetical protein phrog_2012 minor tail protein tail 1 23620 24258
YP_008051137.1 NC_021301_p11 major tail subunit phrog_476 major tail protein tail 1 7618 8427
YP_008051218.1 NC_021301_p92 hypothetical protein phrog_1694 unknown function unknown function 1 52392 52550
YP_008051153.1 NC_021301_p27 hypothetical protein phrog_932 unknown function unknown function 1 25721 25867
YP_008051222.1 NC_021301_p96 polypeptide N-acetylgalactosaminyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 53372 54982
YP_008051217.1 NC_021301_p91 hypothetical protein phrog_1869 unknown function unknown function 1 52222 52386
YP_008051188.1 NC_021301_p62 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 40627 41205
YP_008051200.1 NC_021301_p74 hypothetical protein phrog_1943 unknown function unknown function 1 47154 47348
YP_008051127.1 NC_021301_p1 terminase small subunit phrog_226 minor tail protein tail 1 109 564
YP_008051182.1 NC_021301_p56 hypothetical protein phrog_2096 unknown function unknown function 1 38860 39345
YP_008051185.1 NC_021301_p59 hypothetical protein phrog_2078 unknown function unknown function 1 39988 40143
YP_008051195.1 NC_021301_p69 methylase phrog_3008 DNA methyltransferase other 1 45358 45711
YP_008051178.1 NC_021301_p52 hypothetical protein phrog_8015 unknown function unknown function 1 37384 37665
YP_008051224.1 NC_021301_p98 glycosyltransferase-like domain protein phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 55188 55811
YP_008051225.1 NC_021301_p99 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 55811 56137
YP_008051191.1 NC_021301_p65 DNA methylase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 41752 44313
YP_008051190.1 NC_021301_p64 hypothetical protein phrog_2070 unknown function unknown function 1 41555 41758
YP_008051177.1 NC_021301_p51 hypothetical protein phrog_1797 unknown function unknown function 1 36788 37366
YP_008051152.1 NC_021301_p26 hypothetical protein phrog_411 unknown function unknown function 1 25430 25714
YP_008051179.1 NC_021301_p53 hypothetical protein phrog_1849 unknown function unknown function 1 37744 38025
YP_008051173.1 NC_021301_p47 prophage antirepressor phrog_130 anti-repressor Ant transcription regulation 1 35103 36107
YP_008051158.1 NC_021301_p32 holin phrog_443 holin lysis 1 28515 28748
YP_008051193.1 NC_021301_p67 hypothetical protein phrog_1311 unknown function unknown function 1 44560 44715
YP_008051166.1 NC_021301_p40 HTH DNA binding domain protein phrog_5497 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30981 31178