| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021302 |
Definition |
Mycobacterium phage Fishburne, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pclasvirinae; Fishburnevirus. |
DB of origin |
REFSEQ |
Length |
47109 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
67.26 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008051226.1 | NC_021302_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 55 | 444 |
| YP_008051229.1 | NC_021302_p4 | capsid maturation protease | phrog_2976 | head maturation protease | head and packaging | 1 | 3551 | 4888 |
| YP_008051228.1 | NC_021302_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 2106 | 3560 |
| YP_008051262.1 | NC_021302_p37 | hypothetical protein | phrog_5015 | unknown function | unknown function | 1 | 29343 | 29744 |
| YP_008051232.1 | NC_021302_p7 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 6238 | 6588 |
| YP_008051251.1 | NC_021302_p26 | lysin A | phrog_6707 | endolysin | lysis | 1 | 23120 | 24055 |
| YP_008051242.1 | NC_021302_p17 | tape measure protein | phrog_2337 | tail length tape measure protein | tail | 1 | 10873 | 14643 |
| YP_008051285.1 | NC_021302_p60 | hypothetical protein | phrog_8769 | methyltransferase | other | 1 | 39845 | 40051 |
| YP_008051235.1 | NC_021302_p10 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 7319 | 7663 |
| YP_008051294.1 | NC_021302_p69 | hypothetical protein | phrog_7429 | unknown function | unknown function | 1 | 44113 | 44325 |
| YP_008051281.1 | NC_021302_p56 | hypothetical protein | phrog_5921 | unknown function | unknown function | 1 | 37477 | 37629 |
| YP_008051277.1 | NC_021302_p52 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 36036 | 36263 |
| YP_008051300.1 | NC_021302_p75 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 45910 | 46278 |
| YP_008051271.1 | NC_021302_p46 | RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32543 | 33535 |
| YP_008051261.1 | NC_021302_p36 | hypothetical protein | phrog_9041 | unknown function | unknown function | 1 | 29098 | 29346 |
| YP_008051233.1 | NC_021302_p8 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6592 | 6954 |
| YP_008051257.1 | NC_021302_p32 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 27464 | 27709 |
| YP_008051273.1 | NC_021302_p48 | FtsK-like protein | phrog_6152 | unknown function | unknown function | 1 | 33810 | 34877 |
| YP_008051259.1 | NC_021302_p34 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 27939 | 28805 |
| YP_008051244.1 | NC_021302_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16385 | 18121 |
| YP_008051275.1 | NC_021302_p50 | hypothetical protein | phrog_6109 | unknown function | unknown function | 1 | 35371 | 35613 |
| YP_008051248.1 | NC_021302_p23 | hypothetical protein | phrog_6374 | unknown function | unknown function | 1 | 22351 | 22500 |
| YP_008051247.1 | NC_021302_p22 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 21299 | 22336 |
| YP_008051227.1 | NC_021302_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 413 | 2089 |
| YP_008051239.1 | NC_021302_p14 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 8834 | 9832 |
| YP_008051236.1 | NC_021302_p11 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 7663 | 7932 |
| YP_008051298.1 | NC_021302_p73 | hypothetical protein | phrog_4738 | transcriptional repressor | transcription regulation | 1 | 45082 | 45255 |
| YP_008051293.1 | NC_021302_p68 | hypothetical protein | phrog_5855 | unknown function | unknown function | 1 | 43537 | 44037 |
| YP_008051276.1 | NC_021302_p51 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 35610 | 35894 |
| YP_008051249.1 | NC_021302_p24 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22517 | 22879 |
| YP_008051240.1 | NC_021302_p15 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9941 | 10859 |
| YP_008051255.2 | NC_021302_p30 | integrase | phrog_1 | integrase | integration and excision | -1 | 25919 | 26875 |
| YP_008051296.1 | NC_021302_p71 | hypothetical protein | phrog_4550 | unknown function | unknown function | 1 | 44712 | 44885 |
| YP_008051289.1 | NC_021302_p64 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 41860 | 42762 |
| YP_008051269.1 | NC_021302_p44 | hypothetical protein | phrog_4702 | unknown function | unknown function | 1 | 31471 | 31620 |
| YP_008051237.1 | NC_021302_p12 | hypothetical protein | phrog_2325 | minor tail protein | tail | 1 | 7932 | 8309 |
| YP_008051234.1 | NC_021302_p9 | head-to-tail connector complex protein | phrog_6553 | head closure Hc1 | connector | 1 | 6954 | 7304 |
| YP_008051299.1 | NC_021302_p74 | hypothetical protein | phrog_6617 | unknown function | unknown function | 1 | 45455 | 45913 |
| YP_008051292.1 | NC_021302_p67 | hypothetical protein | phrog_10505 | unknown function | unknown function | 1 | 43282 | 43464 |
| YP_008051295.1 | NC_021302_p70 | hypothetical protein | phrog_2202 | unknown function | unknown function | 1 | 44389 | 44715 |
| YP_008051283.1 | NC_021302_p58 | hypothetical protein | phrog_25269 | unknown function | unknown function | 1 | 38945 | 39733 |
| YP_008051291.1 | NC_021302_p66 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 43028 | 43282 |
| YP_008051231.1 | NC_021302_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5294 | 6238 |
| YP_008051282.1 | NC_021302_p57 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 37732 | 38952 |
| YP_008051252.1 | NC_021302_p27 | lysin B | phrog_102 | endolysin | lysis | 1 | 24052 | 25218 |
| YP_008051243.1 | NC_021302_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14640 | 16385 |
| YP_008051286.1 | NC_021302_p61 | HTH DNA binding protein | phrog_1408 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 40183 | 41073 |
| YP_008051256.1 | NC_021302_p31 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 26946 | 27347 |
| YP_008051270.1 | NC_021302_p45 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31617 | 32546 |
| YP_008051253.1 | NC_021302_p28 | hypothetical protein | phrog_443 | holin | lysis | 1 | 25240 | 25488 |
| YP_008051280.1 | NC_021302_p55 | HTH DNA binding protein | phrog_7170 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36816 | 37484 |
| YP_008051245.1 | NC_021302_p20 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 18144 | 19037 |
| YP_008051246.1 | NC_021302_p21 | minor tail protein | phrog_3493 | minor tail protein | tail | 1 | 19038 | 21299 |
| YP_008051238.1 | NC_021302_p13 | head-to-tail connector complex protein | phrog_813 | head-tail adaptor | connector | 1 | 8306 | 8743 |
| YP_008051268.1 | NC_021302_p43 | hypothetical protein | phrog_5806 | unknown function | unknown function | 1 | 31257 | 31388 |
| YP_008051258.1 | NC_021302_p33 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 27706 | 27942 |
| YP_008051284.1 | NC_021302_p59 | hypothetical protein | phrog_7789 | unknown function | unknown function | 1 | 39733 | 39822 |
| YP_008051279.1 | NC_021302_p54 | hypothetical protein | phrog_17383 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36580 | 36819 |
| YP_008051266.1 | NC_021302_p41 | hypothetical protein | phrog_5803 | unknown function | unknown function | 1 | 30812 | 31084 |
| YP_008051290.1 | NC_021302_p65 | hypothetical protein | phrog_16825 | unknown function | unknown function | 1 | 42759 | 43031 |
| YP_008051260.1 | NC_021302_p35 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 28802 | 29101 |
| YP_008051241.1 | NC_021302_p16 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9941 | 10540 |
| YP_008051287.1 | NC_021302_p62 | hypothetical protein | phrog_3599 | unknown function | unknown function | 1 | 41070 | 41600 |
| YP_008051264.1 | NC_021302_p39 | hypothetical protein | phrog_4656 | unknown function | unknown function | 1 | 30310 | 30543 |
| YP_008051250.1 | NC_021302_p25 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 22879 | 23049 |
| YP_008051274.1 | NC_021302_p49 | RusA-like protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34877 | 35377 |
| YP_008051263.1 | NC_021302_p38 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 29807 | 30310 |
| YP_008051278.1 | NC_021302_p53 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 36260 | 36583 |
| YP_008051302.1 | NC_021302_p77 | hypothetical protein | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46518 | 46901 |
| YP_008051230.1 | NC_021302_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4892 | 5257 |
| YP_008051297.1 | NC_021302_p72 | hypothetical protein | phrog_10254 | unknown function | unknown function | 1 | 44882 | 45073 |
| YP_008051267.1 | NC_021302_p42 | hypothetical protein | phrog_5559 | unknown function | unknown function | 1 | 31081 | 31260 |
| YP_008051265.1 | NC_021302_p40 | hypothetical protein | phrog_4981 | unknown function | unknown function | 1 | 30540 | 30815 |
| YP_008051272.1 | NC_021302_p47 | hypothetical protein | phrog_4387 | unknown function | unknown function | 1 | 33532 | 33813 |
| YP_008051254.1 | NC_021302_p29 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 25485 | 25844 |
| YP_008051288.1 | NC_021302_p63 | hypothetical protein | phrog_7254 | unknown function | unknown function | 1 | 41597 | 41863 |
| YP_008051301.1 | NC_021302_p76 | hypothetical protein | phrog_7285 | unknown function | unknown function | 1 | 46265 | 46513 |