| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021304 |
Definition |
Streptomyces phage Sujidade, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Likavirus. |
DB of origin |
REFSEQ |
Length |
51552 |
Host Name |
Streptomyces lividans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
65.7 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008051450.1 | NC_021304_p48 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 32754 | 34844 |
| YP_008051446.1 | NC_021304_p44 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30307 | 31497 |
| YP_008051451.1 | NC_021304_p49 | Lsr2-like protein | phrog_6509 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | 1 | 34905 | 35120 |
| YP_008051407.1 | NC_021304_p5 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 1950 | 2207 |
| YP_008051477.1 | NC_021304_p75 | hypothetical protein | phrog_4485 | unknown function | unknown function | -1 | 50125 | 50244 |
| YP_008051414.1 | NC_021304_p12 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8602 | 9108 |
| YP_008051404.1 | NC_021304_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 723 | 1034 |
| YP_008051463.1 | NC_021304_p61 | hypothetical protein | phrog_5209 | unknown function | unknown function | -1 | 44165 | 44470 |
| YP_008051415.1 | NC_021304_p13 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 9105 | 9440 |
| YP_008051421.1 | NC_021304_p19 | tape measure | phrog_305 | tail length tape measure protein | tail | 1 | 11947 | 15270 |
| YP_008051429.1 | NC_021304_p27 | hypothetical protein | phrog_1493 | endolysin | lysis | 1 | 21949 | 23037 |
| YP_008051449.1 | NC_021304_p47 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 32278 | 32655 |
| YP_008051461.1 | NC_021304_p59 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 43309 | 43545 |
| YP_008051448.1 | NC_021304_p46 | hypothetical protein | phrog_3512 | sigma factor | transcription regulation | 1 | 31883 | 32281 |
| YP_008051412.1 | NC_021304_p10 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6900 | 7445 |
| YP_008051444.1 | NC_021304_p42 | hypothetical protein | phrog_6217 | unknown function | unknown function | 1 | 29926 | 30099 |
| YP_008051419.1 | NC_021304_p17 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 11228 | 11943 |
| YP_008051447.1 | NC_021304_p45 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 31524 | 31883 |
| YP_008051426.1 | NC_021304_p24 | hypothetical protein | phrog_4817 | unknown function | unknown function | 1 | 19649 | 20149 |
| YP_008051466.1 | NC_021304_p64 | hypothetical protein | phrog_9778 | unknown function | unknown function | -1 | 45095 | 45271 |
| YP_008051478.1 | NC_021304_p76 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 50344 | 50748 |
| YP_008051474.1 | NC_021304_p72 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 48286 | 48411 |
| YP_008051457.1 | NC_021304_p55 | DNA polymerase III subunit alpha | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 38570 | 42046 |
| YP_008051438.1 | NC_021304_p36 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 27330 | 28085 |
| YP_008051408.1 | NC_021304_p6 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2226 | 2651 |
| YP_008051427.1 | NC_021304_p25 | hypothetical protein | phrog_988 | tail protein | tail | 1 | 20225 | 21571 |
| YP_008051445.1 | NC_021304_p43 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 30096 | 30314 |
| YP_008051468.1 | NC_021304_p66 | hypothetical protein | phrog_4867 | unknown function | unknown function | -1 | 45636 | 46001 |
| YP_008051453.1 | NC_021304_p51 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 37096 | 37812 |
| YP_008051436.1 | NC_021304_p34 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 26284 | 26721 |
| YP_008051406.1 | NC_021304_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1678 | 1953 |
| YP_008051467.1 | NC_021304_p65 | hypothetical protein | phrog_4785 | unknown function | unknown function | -1 | 45268 | 45552 |
| YP_008051422.1 | NC_021304_p20 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 15274 | 16131 |
| YP_008051403.1 | NC_021304_p1 | hypothetical protein | phrog_4207 | unknown function | unknown function | -1 | 91 | 297 |
| YP_008051464.1 | NC_021304_p62 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 44467 | 44709 |
| YP_008051441.1 | NC_021304_p39 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28652 | 29086 |
| YP_008051433.1 | NC_021304_p31 | hypothetical protein | phrog_5250 | unknown function | unknown function | 1 | 24305 | 24607 |
| YP_008051462.1 | NC_021304_p60 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 43584 | 44168 |
| YP_008051428.1 | NC_021304_p26 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 21571 | 21924 |
| YP_008051471.1 | NC_021304_p69 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 47101 | 47304 |
| YP_008051443.1 | NC_021304_p41 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 29582 | 29929 |
| YP_008051455.1 | NC_021304_p53 | hypothetical protein | phrog_5971 | unknown function | unknown function | -1 | 38087 | 38269 |
| YP_008051420.1 | NC_021304_p18 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 11228 | 11551 |
| YP_008051423.1 | NC_021304_p21 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 16135 | 17346 |
| YP_008051417.1 | NC_021304_p15 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9838 | 10341 |
| YP_008051472.1 | NC_021304_p70 | hypothetical protein | phrog_4239 | unknown function | unknown function | -1 | 47307 | 47762 |
| YP_008051460.1 | NC_021304_p58 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 42794 | 43225 |
| YP_008051424.1 | NC_021304_p22 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 17350 | 17646 |
| YP_008051435.1 | NC_021304_p33 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 25698 | 26216 |
| YP_008051442.1 | NC_021304_p40 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28920 | 29585 |
| YP_008051470.1 | NC_021304_p68 | HNH domain protein | phrog_4842 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46527 | 47000 |
| YP_008051440.1 | NC_021304_p38 | hypothetical protein | phrog_4673 | unknown function | unknown function | 1 | 28513 | 28665 |
| YP_008051410.1 | NC_021304_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 4351 | 5787 |
| YP_008051432.1 | NC_021304_p30 | immunity repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 23705 | 24157 |
| YP_008051425.1 | NC_021304_p23 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 17648 | 19633 |
| YP_008051418.1 | NC_021304_p16 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 10358 | 11113 |
| YP_008051459.1 | NC_021304_p57 | hypothetical protein | phrog_22195 | unknown function | unknown function | -1 | 42293 | 42775 |
| YP_008051476.1 | NC_021304_p74 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 49608 | 50093 |
| YP_008051431.1 | NC_021304_p29 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 23358 | 23618 |
| YP_008051458.1 | NC_021304_p56 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 42043 | 42279 |
| YP_008051434.1 | NC_021304_p32 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24604 | 25575 |
| YP_008051439.1 | NC_021304_p37 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28154 | 28516 |
| YP_008051475.1 | NC_021304_p73 | hypothetical protein | phrog_4313 | unknown function | unknown function | -1 | 48510 | 49487 |
| YP_008051479.1 | NC_021304_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50831 | 51109 |
| YP_008051456.1 | NC_021304_p54 | hypothetical protein | phrog_20783 | unknown function | unknown function | -1 | 38266 | 38553 |
| YP_008051405.1 | NC_021304_p3 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1428 | 1658 |
| YP_008051409.1 | NC_021304_p7 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2672 | 4318 |
| YP_008051413.1 | NC_021304_p11 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 7516 | 8589 |
| YP_008051430.1 | NC_021304_p28 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 23034 | 23303 |
| YP_008051411.1 | NC_021304_p9 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5784 | 6896 |
| YP_008051452.1 | NC_021304_p50 | integrase | phrog_95 | integrase | integration and excision | 1 | 35406 | 36983 |
| YP_008051416.1 | NC_021304_p14 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 9440 | 9838 |
| YP_008051437.1 | NC_021304_p35 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 26794 | 27273 |
| YP_008051473.1 | NC_021304_p71 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 47853 | 48272 |
| YP_008051465.1 | NC_021304_p63 | hypothetical protein | phrog_9416 | unknown function | unknown function | -1 | 44706 | 45011 |
| YP_008051469.1 | NC_021304_p67 | hypothetical protein | phrog_22195 | unknown function | unknown function | -1 | 45998 | 46444 |
| YP_008051454.1 | NC_021304_p52 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 37809 | 38084 |