| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021305 |
Definition |
Mycobacterium phage Murphy, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
REFSEQ |
Length |
76179 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
146 |
%GC |
62.92 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008051482.1 | NC_021305_p3 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| YP_008051604.1 | NC_021305_p125 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 69322 | 69711 |
| YP_008051481.1 | NC_021305_p2 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| YP_008051536.1 | NC_021305_p57 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40079 | 40510 |
| YP_008051522.1 | NC_021305_p43 | hypothetical protein | phrog_5831 | unknown function | unknown function | -1 | 34879 | 35061 |
| YP_008051564.1 | NC_021305_p85 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 52277 | 52642 |
| YP_008051616.1 | NC_021305_p137 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 73323 | 73496 |
| YP_008051578.1 | NC_021305_p99 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 58919 | 60163 |
| YP_008051520.1 | NC_021305_p41 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34167 | 34631 |
| YP_008051501.1 | NC_021305_p22 | HNH endonuclease | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 12799 | 13311 |
| YP_008051527.1 | NC_021305_p48 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 35966 | 36133 |
| YP_008051506.1 | NC_021305_p27 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22263 | 24659 |
| YP_008051607.1 | NC_021305_p128 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70154 | 70522 |
| YP_008051513.1 | NC_021305_p34 | holin | phrog_526 | holin | lysis | 1 | 31126 | 31509 |
| YP_008051596.1 | NC_021305_p117 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 67336 | 67749 |
| YP_008051510.1 | NC_021305_p31 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28944 | 29129 |
| YP_008051601.1 | NC_021305_p122 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 68407 | 68538 |
| YP_008051497.1 | NC_021305_p18 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 10307 | 11281 |
| YP_008051504.1 | NC_021305_p25 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19809 | 21404 |
| YP_008051480.1 | NC_021305_p1 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| YP_008051483.1 | NC_021305_p4 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 783 | 1064 |
| YP_008051551.1 | NC_021305_p72 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47317 | 47685 |
| YP_008051611.1 | NC_021305_p132 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 71646 | 71756 |
| YP_008051558.1 | NC_021305_p79 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49412 | 50062 |
| YP_008051533.1 | NC_021305_p54 | integrase (Y-int) | phrog_1 | integrase | integration and excision | 1 | 37974 | 38855 |
| YP_008051603.1 | NC_021305_p124 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 69062 | 69325 |
| YP_008051498.1 | NC_021305_p19 | hypothetical protein | phrog_5711 | head fiber protein | head and packaging | 1 | 11341 | 11814 |
| YP_008051620.1 | NC_021305_p141 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 74166 | 74414 |
| YP_008051576.1 | NC_021305_p97 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58048 | 58383 |
| YP_008051547.1 | NC_021305_p68 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45418 | 45828 |
| YP_008051505.1 | NC_021305_p26 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21413 | 22246 |
| YP_008051544.1 | NC_021305_p65 | hypothetical protein | phrog_16636 | secreted protein | other | 1 | 43528 | 44130 |
| YP_008051560.1 | NC_021305_p81 | DnaB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50384 | 51646 |
| YP_008051566.1 | NC_021305_p87 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 52998 | 53192 |
| YP_008051600.1 | NC_021305_p121 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68228 | 68407 |
| YP_008051517.1 | NC_021305_p38 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33114 | 33359 |
| YP_008051585.1 | NC_021305_p106 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 63249 | 63473 |
| YP_008051612.1 | NC_021305_p133 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 71761 | 71997 |
| YP_008051579.1 | NC_021305_p100 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60156 | 60596 |
| YP_008051589.1 | NC_021305_p110 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 64611 | 65396 |
| YP_008051592.1 | NC_021305_p113 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 66602 | 66739 |
| YP_008051562.1 | NC_021305_p83 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 51813 | 52088 |
| YP_008051532.1 | NC_021305_p53 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 37421 | 37723 |
| YP_008051512.1 | NC_021305_p33 | lysin A | phrog_317 | endolysin | lysis | 1 | 29620 | 31122 |
| YP_008051609.1 | NC_021305_p130 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 70992 | 71321 |
| YP_008051492.1 | NC_021305_p13 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 8426 | 8605 |
| YP_008051518.1 | NC_021305_p39 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33539 | 33925 |
| YP_008051552.1 | NC_021305_p73 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 47688 | 48056 |
| YP_008051610.1 | NC_021305_p131 | hypothetical protein | phrog_4547 | unknown function | unknown function | -1 | 71323 | 71640 |
| YP_008051577.1 | NC_021305_p98 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58380 | 58922 |
| YP_008051543.1 | NC_021305_p64 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43216 | 43515 |
| YP_008051534.1 | NC_021305_p55 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 38994 | 39233 |
| YP_008051530.1 | NC_021305_p51 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 36593 | 36739 |
| YP_008051555.1 | NC_021305_p76 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 48462 | 48875 |
| YP_008051528.1 | NC_021305_p49 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36130 | 36366 |
| YP_008051568.1 | NC_021305_p89 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 54396 | 54764 |
| YP_008051583.1 | NC_021305_p104 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 62141 | 62452 |
| YP_008051584.1 | NC_021305_p105 | HNH homing endonuclease domain protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62505 | 62795 |
| YP_008051625.1 | NC_021305_p146 | HNH endonuclease domain protein | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 75598 | 75945 |
| YP_008051508.1 | NC_021305_p29 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27497 | 28459 |
| YP_008051542.1 | NC_021305_p63 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 42777 | 43082 |
| YP_008051572.1 | NC_021305_p93 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57036 | 57296 |
| YP_008051602.1 | NC_021305_p123 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68522 | 68683 |
| YP_008051582.1 | NC_021305_p103 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 61846 | 62136 |
| YP_008051590.1 | NC_021305_p111 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 65393 | 65635 |
| YP_008051500.1 | NC_021305_p21 | tail assembly chaperone | phrog_5940 | tail assembly chaperone | tail | 1 | 12528 | 12809 |
| YP_008051486.1 | NC_021305_p7 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1829 | 2137 |
| YP_008051593.1 | NC_021305_p114 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 66726 | 66899 |
| YP_008051548.1 | NC_021305_p69 | Erf protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45821 | 46543 |
| YP_008051493.1 | NC_021305_p14 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 8605 | 9171 |
| YP_008051594.1 | NC_021305_p115 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 66892 | 67104 |
| YP_008051622.1 | NC_021305_p143 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74667 | 75014 |
| YP_008051615.1 | NC_021305_p136 | hypothetical protein | phrog_4496 | unknown function | unknown function | -1 | 72965 | 73318 |
| YP_008051598.1 | NC_021305_p119 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 67897 | 68097 |
| YP_008051556.1 | NC_021305_p77 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48872 | 49189 |
| YP_008051541.1 | NC_021305_p62 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 41955 | 42233 |
| YP_008051535.1 | NC_021305_p56 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39211 | 39984 |
| YP_008051575.1 | NC_021305_p96 | hypothetical protein | phrog_7833 | unknown function | unknown function | 1 | 57924 | 58046 |
| YP_008051549.1 | NC_021305_p70 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 46536 | 46847 |
| YP_008051526.1 | NC_021305_p47 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 35838 | 35966 |
| YP_008051605.1 | NC_021305_p126 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 69831 | 70082 |
| YP_008051523.1 | NC_021305_p44 | hypothetical protein | phrog_3447 | unknown function | unknown function | -1 | 35058 | 35270 |
| YP_008051573.1 | NC_021305_p94 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57313 | 57471 |
| YP_008051580.1 | NC_021305_p101 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 60686 | 61492 |
| YP_008051619.1 | NC_021305_p140 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 73941 | 74138 |
| YP_008051519.1 | NC_021305_p40 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 33973 | 34170 |
| YP_008051524.1 | NC_021305_p45 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35267 | 35671 |
| YP_008051484.1 | NC_021305_p5 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |
| YP_008051571.1 | NC_021305_p92 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 56218 | 57039 |
| YP_008051545.1 | NC_021305_p66 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44127 | 44456 |
| YP_008051529.1 | NC_021305_p50 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36359 | 36574 |
| YP_008051570.1 | NC_021305_p91 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54856 | 56181 |
| YP_008051488.1 | NC_021305_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 3864 | 4085 |
| YP_008051550.1 | NC_021305_p71 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 46847 | 47317 |
| YP_008051546.1 | NC_021305_p67 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44453 | 45421 |
| YP_008051502.1 | NC_021305_p23 | tapemeasure | phrog_2723 | tail length tape measure protein | tail | 1 | 13316 | 18046 |
| YP_008051503.1 | NC_021305_p24 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18076 | 19737 |
| YP_008051624.1 | NC_021305_p145 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75387 | 75608 |
| YP_008051567.1 | NC_021305_p88 | Pnk | phrog_505 | polynucleotide kinase | other | 1 | 53347 | 54288 |
| YP_008051617.1 | NC_021305_p138 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73493 | 73729 |
| YP_008051494.1 | NC_021305_p15 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 9186 | 9521 |
| YP_008051491.1 | NC_021305_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6810 | 8303 |
| YP_008051614.1 | NC_021305_p135 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 72565 | 72960 |
| YP_008051563.1 | NC_021305_p84 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52063 | 52284 |
| YP_008051574.1 | NC_021305_p95 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57468 | 57920 |
| YP_008051499.1 | NC_021305_p20 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 11935 | 12396 |
| YP_008051490.1 | NC_021305_p11 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 5631 | 6722 |
| YP_008051623.1 | NC_021305_p144 | hypothetical protein | phrog_8080 | unknown function | unknown function | -1 | 75061 | 75279 |
| YP_008051595.1 | NC_021305_p116 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 67085 | 67339 |
| YP_008051539.1 | NC_021305_p60 | pentapeptide repeat domain protein | phrog_923 | unknown function | unknown function | 1 | 40965 | 41810 |
| YP_008051537.1 | NC_021305_p58 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 40736 | 40834 |
| YP_008051531.1 | NC_021305_p52 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 36739 | 37134 |
| YP_008051485.1 | NC_021305_p6 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1590 | 1829 |
| YP_008051538.1 | NC_021305_p59 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 40831 | 40968 |
| YP_008051608.1 | NC_021305_p129 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 70519 | 70977 |
| YP_008051621.1 | NC_021305_p142 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 74411 | 74602 |
| YP_008051525.1 | NC_021305_p46 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 35668 | 35841 |
| YP_008051618.1 | NC_021305_p139 | hypothetical protein | phrog_7581 | unknown function | unknown function | -1 | 73732 | 73935 |
| YP_008051557.1 | NC_021305_p78 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49179 | 49415 |
| YP_008051565.1 | NC_021305_p86 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52639 | 53001 |
| YP_008051613.1 | NC_021305_p134 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72013 | 72561 |
| YP_008051591.1 | NC_021305_p112 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 65643 | 66605 |
| YP_008051521.1 | NC_021305_p42 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 34628 | 34882 |
| YP_008051588.1 | NC_021305_p109 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 64121 | 64600 |
| YP_008051515.1 | NC_021305_p36 | lysin B | phrog_102 | endolysin | lysis | 1 | 31837 | 32694 |
| YP_008051554.1 | NC_021305_p75 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48232 | 48465 |
| YP_008051569.1 | NC_021305_p90 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 54761 | 54859 |
| YP_008051516.1 | NC_021305_p37 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32691 | 33107 |
| YP_008051511.1 | NC_021305_p32 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29262 | 29546 |
| YP_008051540.1 | NC_021305_p61 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 41812 | 41958 |
| YP_008051509.1 | NC_021305_p30 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28529 | 28957 |
| YP_008051495.1 | NC_021305_p16 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 9518 | 9898 |
| YP_008051496.1 | NC_021305_p17 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 9876 | 10280 |
| YP_008051597.1 | NC_021305_p118 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 67746 | 67913 |
| YP_008051489.1 | NC_021305_p10 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4072 | 5628 |
| YP_008051586.1 | NC_021305_p107 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 63470 | 63733 |
| YP_008051507.1 | NC_021305_p28 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24656 | 27496 |
| YP_008051553.1 | NC_021305_p74 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48056 | 48235 |
| YP_008051561.1 | NC_021305_p82 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51643 | 51831 |
| YP_008051514.1 | NC_021305_p35 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31502 | 31840 |
| YP_008051606.1 | NC_021305_p127 | hypothetical protein | phrog_8201 | unknown function | unknown function | -1 | 70083 | 70157 |
| YP_008051559.1 | NC_021305_p80 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50059 | 50391 |
| YP_008051581.1 | NC_021305_p102 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 61489 | 61845 |
| YP_008051487.1 | NC_021305_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2182 | 3852 |
| YP_008051587.1 | NC_021305_p108 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 63744 | 64118 |
| YP_008051599.1 | NC_021305_p120 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 68094 | 68231 |